mRNA_L-elsbetiae_contig1016.212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1016.212.1
Unique NamemRNA_L-elsbetiae_contig1016.212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1016.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1016contigL-elsbetiae_contig1016:23856..24543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size688
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1016.212.1prot_L-elsbetiae_contig1016.212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1016 23890..24306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.004209-UTR-L-elsbetiae_contig1016:23855..238891622815247.004209-UTR-L-elsbetiae_contig1016:23855..23889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1016 23856..23889 +
1691682793.9458368-UTR-L-elsbetiae_contig1016:23855..238891691682793.9458368-UTR-L-elsbetiae_contig1016:23855..23889Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1016 23856..23889 +
1622815247.036115-UTR-L-elsbetiae_contig1016:24306..245431622815247.036115-UTR-L-elsbetiae_contig1016:24306..24543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1016 24307..24543 +
1691682793.9630797-UTR-L-elsbetiae_contig1016:24306..245431691682793.9630797-UTR-L-elsbetiae_contig1016:24306..24543Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1016 24307..24543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815247.0253491-CDS-L-elsbetiae_contig1016:23889..243061622815247.0253491-CDS-L-elsbetiae_contig1016:23889..24306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1016 23890..24306 +
1691682793.9547765-CDS-L-elsbetiae_contig1016:23889..243061691682793.9547765-CDS-L-elsbetiae_contig1016:23889..24306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1016 23890..24306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1016.212.1

>prot_L-elsbetiae_contig1016.212.1 ID=prot_L-elsbetiae_contig1016.212.1|Name=mRNA_L-elsbetiae_contig1016.212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MYTTTAARRVCSGRIFRPQTSLLKEKLSISKNRLRRYVFFRKHSVIHFLC
EEVWRKTRQLLTLTLTLYQAVMPILNRGNQRCSGFVRRQNEYALRGILCT
TAVGFQGAWYPPTALFSYRSGPAFLSYVEPSCFVCSDS*
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mRNA from alignment at L-elsbetiae_contig1016:23856..24543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1016.212.1 ID=mRNA_L-elsbetiae_contig1016.212.1|Name=mRNA_L-elsbetiae_contig1016.212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=688bp|location=Sequence derived from alignment at L-elsbetiae_contig1016:23856..24543+ (Laminarionema elsbetiae ELsaHSoW15)
ACAACACACTCCCGCCAAAAAAAAAAATGCTGCGATGTACACGACGACAG
CCGCACGTCGGGTGTGTTCAGGTAGGATATTTCGCCCACAAACAAGCCTC
TTGAAAGAAAAGCTGTCAATCTCGAAAAATCGCTTGCGTAGGTACGTTTT
TTTTCGCAAACACTCTGTGATTCATTTCCTCTGCGAGGAAGTGTGGAGAA
AAACACGCCAGCTACTAACTCTAACCCTAACCCTGTATCAAGCGGTCATG
CCTATACTCAATAGGGGCAATCAACGTTGCTCCGGTTTTGTTCGAAGGCA
AAATGAATATGCACTCCGCGGTATTTTATGTACAACAGCAGTAGGGTTCC
AGGGCGCGTGGTACCCACCTACTGCATTATTTAGCTATCGCTCCGGCCCT
GCATTTCTATCCTACGTAGAGCCATCCTGCTTCGTATGTTCTGACAGCTG
AAGAAATTACAATTCTTGATCTTCAAAGTGTTCAGCAGCCACACGACGTC
GCACCACACTTTTGGCACCTCAATGAACATTTGTCGGCCATCCCTTTTTG
GCAGTTTTGGTCGTGCTCCAACCGAGCCACAATGTTGACTTGACGTGTGC
AAACCATGCGCATTTCTCTTTTTTATTTTCGGCCTTACCCCTGTCTGCCC
CTCTCCCGAATCAACAGTACTTGCTGAGCCAGTCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1016:23856..24543+

>mRNA_L-elsbetiae_contig1016.212.1 ID=mRNA_L-elsbetiae_contig1016.212.1|Name=mRNA_L-elsbetiae_contig1016.212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig1016:23856..24543+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACACGACGACAGCCGCACGTCGGGTGTGTTCAGGTAGGATATTTCG
CCCACAAACAAGCCTCTTGAAAGAAAAGCTGTCAATCTCGAAAAATCGCT
TGCGTAGGTACGTTTTTTTTCGCAAACACTCTGTGATTCATTTCCTCTGC
GAGGAAGTGTGGAGAAAAACACGCCAGCTACTAACTCTAACCCTAACCCT
GTATCAAGCGGTCATGCCTATACTCAATAGGGGCAATCAACGTTGCTCCG
GTTTTGTTCGAAGGCAAAATGAATATGCACTCCGCGGTATTTTATGTACA
ACAGCAGTAGGGTTCCAGGGCGCGTGGTACCCACCTACTGCATTATTTAG
CTATCGCTCCGGCCCTGCATTTCTATCCTACGTAGAGCCATCCTGCTTCG
TATGTTCTGACAGCTGAATGTACACGACGACAGCCGCACGTCGGGTGTGT
TCAGGTAGGATATTTCGCCCACAAACAAGCCTCTTGAAAGAAAAGCTGTC
AATCTCGAAAAATCGCTTGCGTAGGTACGTTTTTTTTCGCAAACACTCTG
TGATTCATTTCCTCTGCGAGGAAGTGTGGAGAAAAACACGCCAGCTACTA
ACTCTAACCCTAACCCTGTATCAAGCGGTCATGCCTATACTCAATAGGGG
CAATCAACGTTGCTCCGGTTTTGTTCGAAGGCAAAATGAATATGCACTCC
GCGGTATTTTATGTACAACAGCAGTAGGGTTCCAGGGCGCGTGGTACCCA
CCTACTGCATTATTTAGCTATCGCTCCGGCCCTGCATTTCTATCCTACGT
AGAGCCATCCTGCTTCGTATGTTCTGACAGCTGA
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