mRNA_L-elsbetiae_contig10152.204.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10152.204.1
Unique NamemRNA_L-elsbetiae_contig10152.204.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10152.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10152contigL-elsbetiae_contig10152:4626..6246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size754
Cds size750
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815246.685746-CDS-L-elsbetiae_contig10152:4627..52281622815246.685746-CDS-L-elsbetiae_contig10152:4627..5228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10152 4628..5228 -
1691682793.7799757-CDS-L-elsbetiae_contig10152:4627..52281691682793.7799757-CDS-L-elsbetiae_contig10152:4627..5228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10152 4628..5228 -
1622815246.697381-CDS-L-elsbetiae_contig10152:6097..62461622815246.697381-CDS-L-elsbetiae_contig10152:6097..6246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10152 6098..6246 -
1691682793.7911434-CDS-L-elsbetiae_contig10152:6097..62461691682793.7911434-CDS-L-elsbetiae_contig10152:6097..6246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10152 6098..6246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10152.204.1prot_L-elsbetiae_contig10152.204.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10152 4628..6246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10152.204.1

>prot_L-elsbetiae_contig10152.204.1 ID=prot_L-elsbetiae_contig10152.204.1|Name=mRNA_L-elsbetiae_contig10152.204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=250bp
AAHWGGVTGSSSDRDGTVPISMDRRGRASRSLGTTFPAYANTGTSSARLG
FRVPGEAFIDGVSPFRSPADTGRGSARGVGGGRRHQQHHQEQQQHEQPRR
RRPVVRLLHMDDPTGAASLHLSDPGGIAPPPPPPPPPPTTTTLSPVSPAA
AQAPPAPTALAMGVVKKEEIGIDRSGGREHDGAGVGCEVGGAPTELRPCR
GATGGSTKDATTTPEDEGRLDGERERRGTSAVLAVATAAAAPVVVVPGKN
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mRNA from alignment at L-elsbetiae_contig10152:4626..6246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10152.204.1 ID=mRNA_L-elsbetiae_contig10152.204.1|Name=mRNA_L-elsbetiae_contig10152.204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1621bp|location=Sequence derived from alignment at L-elsbetiae_contig10152:4626..6246- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCACTGGGGTGGTGTCACCGGCAGCAGCTCGGACAGGGACGGAAC
AGTCCCGATCTCGATGGACCGCAGAGGCAGAGCCTCTCGAAGCCTTGGGA
CGACATTTCCGGCGTACGCCAACACCGGGACGTCGAGTGCTCGCCTCGGG
TACGTAGCAATAGAGCCCCCCCCCCCCCCCCCCCCCCCCCCACCTTTTTT
TTCTTTTTGGGTCGGGTAAGGGGGCCAACGTTTTTTTTCGTGNNNNNNNN
NNCCCCCGCCTGGGGGGGCACCTCCCCGGCGGCCCCACCCCCCGGGCGCC
GGGGCGCCCCCCCGGTGCGCAGAACAAAGGCCCCCCCCCCCCCCCCCCCC
ACTATCCTTTTATTTCATGTCTGGTCGGGATATCGGGCAAACGTTTTTAG
TCATGGGCTTCCTGGCGAGGGTACCGTAGATGATACAAGATACCCCTCCC
TGGACACATTTCCAAAGCTCGATTACTCCGTAACGAAGAGGGGTGTCAGC
ACCAAACGACACATTTTCGGACGGCCCTCGAGTAGACCTTTTTCCATTGC
CACCTCCTTTCGGCGCTGGCACCCTTCTTCTTGCTGGGGAGGAATCGAGC
GTTGAAACATGTTCGGGGGGGGGGGGGGGGGGGTGTTTTTGGTTTGGGTG
TGGGGGGGCCCTTGGGGGCACAGGACCCGGCGCCAACNNNNNNNNNNTCT
TCCCTTCTCCCCGCGCCTCCGGCCCCTTCCCCCTTTTCTTTGGGGGGAGG
GAGGGGCGGGTGGGTACTGTGGGGGGGGGGGGGGGGGGGGGGGTATATTG
TGTCATCTACGGTATGGCGCCTTGACGGCCACAGAATCAGCCTCAAACTC
CAAACACATGCCTGCATGCATGCATGTGTGTATGTGTGACTGCTCCCGTA
GCCCCTAACGTGCGCCCTGCTCCCCCCCCCGCCCCCCCGATGCGTCCGTC
CCTCTCTCCTTTATGCCTTTCTTCTGCGGTACATACACATGGTAATCCAT
CCATCGTGGCTTATGTAGATTTCGGGTGCCTGGCGAGGCCTTCATCGACG
GTGTGTCCCCCTTCCGATCTCCTGCCGACACGGGGCGAGGAAGCGCCCGC
GGCGTCGGCGGTGGTCGGCGGCACCAGCAGCACCACCAGGAACAGCAGCA
GCACGAGCAACCGCGGCGGCGGCGGCCGGTGGTGCGGCTCCTCCACATGG
ACGACCCCACCGGCGCGGCGAGCCTTCACCTCTCCGACCCCGGCGGGATA
GCACCACCACCACCACCACCACCACCACCACCAACAACAACAACACTATC
GCCGGTGTCGCCTGCAGCGGCTCAGGCGCCACCGGCACCAACAGCGCTTG
CCATGGGTGTCGTCAAGAAAGAGGAGATCGGTATCGACCGCAGTGGGGGC
CGTGAGCACGACGGCGCGGGGGTGGGGTGCGAAGTAGGCGGGGCCCCCAC
CGAGCTCAGGCCTTGTCGCGGGGCGACGGGCGGTAGCACCAAGGACGCGA
CGACAACCCCTGAGGATGAGGGCCGTCTGGACGGCGAGCGGGAGAGAAGA
GGCACGTCGGCAGTGCTTGCGGTGGCCACTGCTGCTGCTGCCCCTGTGGT
TGTTGTTCCGGGAAAGAATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10152:4626..6246-

>mRNA_L-elsbetiae_contig10152.204.1 ID=mRNA_L-elsbetiae_contig10152.204.1|Name=mRNA_L-elsbetiae_contig10152.204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig10152:4626..6246- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGCACTGGGGTGGTGTCACCGGCAGCAGCTCGGACAGGGACGGAAC
AGTCCCGATCTCGATGGACCGCAGAGGCAGAGCCTCTCGAAGCCTTGGGA
CGACATTTCCGGCGTACGCCAACACCGGGACGTCGAGTGCTCGCCTCGGG
CGGCGCACTGGGGTGGTGTCACCGGCAGCAGCTCGGACAGGGACGGAACA
GTCCCGATCTCGATGGACCGCAGAGGCAGAGCCTCTCGAAGCCTTGGGAC
GACATTTCCGGCGTACGCCAACACCGGGACGTCGAGTGCTCGCCTCGGAT
TTCGGGTGCCTGGCGAGGCCTTCATCGACGGTGTGTCCCCCTTCCGATCT
CCTGCCGACACGGGGCGAGGAAGCGCCCGCGGCGTCGGCGGTGGTCGGCG
GCACCAGCAGCACCACCAGGAACAGCAGCAGCACGAGCAACCGCGGCGGC
GGCGGCCGGTGGTGCGGCTCCTCCACATGGACGACCCCACCGGCGCGGCG
AGCCTTCACCTCTCCGACCCCGGCGGGATAGCACCACCACCACCACCACC
ACCACCACCACCAACAACAACAACACTATCGCCGGTGTCGCCTGCAGCGG
CTCAGGCGCCACCGGCACCAACAGCGCTTGCCATGGGTGTCGTCAAGAAA
GAGGAGATCGGTATCGACCGCAGTGGGGGCCGTGAGCACGACGGCGCGGG
GGTGGGGTGCGAAGTAGGCGGGGCCCCCACCGAGCTCAGGCCTTGTCGCG
GGGCGACGGGCGGTAGCACCAAGGACGCGACGACAACCCCTGAGGATGAG
GGCCGTCTGGACGGCGAGCGGGAGAGAAGAGGCACGTCGGCAGTGCTTGC
GGTGGCCACTGCTGCTGCTGCCCCTGTGGTTGTTGTTCCGGGAAAGAATA
TTTCGGGTGCCTGGCGAGGCCTTCATCGACGGTGTGTCCCCCTTCCGATC
TCCTGCCGACACGGGGCGAGGAAGCGCCCGCGGCGTCGGCGGTGGTCGGC
GGCACCAGCAGCACCACCAGGAACAGCAGCAGCACGAGCAACCGCGGCGG
CGGCGGCCGGTGGTGCGGCTCCTCCACATGGACGACCCCACCGGCGCGGC
GAGCCTTCACCTCTCCGACCCCGGCGGGATAGCACCACCACCACCACCAC
CACCACCACCACCAACAACAACAACACTATCGCCGGTGTCGCCTGCAGCG
GCTCAGGCGCCACCGGCACCAACAGCGCTTGCCATGGGTGTCGTCAAGAA
AGAGGAGATCGGTATCGACCGCAGTGGGGGCCGTGAGCACGACGGCGCGG
GGGTGGGGTGCGAAGTAGGCGGGGCCCCCACCGAGCTCAGGCCTTGTCGC
GGGGCGACGGGCGGTAGCACCAAGGACGCGACGACAACCCCTGAGGATGA
GGGCCGTCTGGACGGCGAGCGGGAGAGAAGAGGCACGTCGGCAGTGCTTG
CGGTGGCCACTGCTGCTGCTGCCCCTGTGGTTGTTGTTCCGGGAAAGAAT
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