Homology
BLAST of mRNA_L-elsbetiae_contig10151.203.1 vs. uniprot
Match:
A0A6H5JB41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB41_9PHAE)
HSP 1 Score: 203 bits (517), Expect = 9.650e-57
Identity = 119/220 (54.09%), Postives = 145/220 (65.91%), Query Frame = 2
Query: 386 TIPGKVGAAAIQKQIDSIRTRRTRG-GDSSP--GGRIHWATSKASGDRAAAAAAISALPRAVWVLIFGQGSSQF-SSGCAQRGLYCLWSKGLNSAVAFQERDGALRYAFKLRARGLGVPGPTRVAMKDLQRFCSDNGFGVWVVPADVVPEAPQRTKNVMGFDPAAGDSRRSMQGXXXXXXXXXXXXXXXXXXXXXXERSVLTPEDVRKWRADFERLYAQD 1033
+IP VG+AAI++QIDSI+ R+RG G +P G I W S S RA + LPRAVWVL+F QGS F SS QRGLYCLWSKG NSA+AF+ER+GALRYAFKL+ +GLG+P PTRV+M DLQRFC D+ FG+ ++PADVVPEAP++TK +GFDP S S G VLTP+D+RKWRA FERLYAQ+
Sbjct: 70 SIPDSVGSAAIRRQIDSIK--RSRGAGKRTPRQGESIRWVASTESEHRARP----TLLPRAVWVLLFSQGSGSFGSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPTPTRVSMTDLQRFCLDHSFGIRMIPADVVPEAPRKTKKDLGFDPLNLTS--SPHGRRDAGEDAGP---------------VLTPDDIRKWRAKFERLYAQE 266
BLAST of mRNA_L-elsbetiae_contig10151.203.1 vs. uniprot
Match:
D8LLX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX3_ECTSI)
HSP 1 Score: 130 bits (327), Expect = 5.120e-31
Identity = 74/132 (56.06%), Postives = 92/132 (69.70%), Query Frame = 2
Query: 386 TIPGKVGAAAIQKQIDSIRT-----RRTRGGDSSPGGRIHWATSKASGDRAAAAAAISALPRAVWVLIFGQGSSQFSSGCA-QRGLYCLWSKGLNSAVAFQERDGALRYAFKLRARGLGVPGPTRVAMKDLQ 763
+IP +VG+AAI+++IDSI+ +RT D S I W S SG RA + + LPRAVWVLIF QGS FSS QRGLYCLWSKG NSA+AF+ER+GALRYAFKL+ +GLG+P PTRV+M +
Sbjct: 22 SIPDRVGSAAIRRRIDSIKRSRGAGKRTPRQDES----IRWVASTESGHRARS----TLLPRAVWVLIFNQGSGSFSSSSEPQRGLYCLWSKGTNSALAFEEREGALRYAFKLKEKGLGIPRPTRVSMTSFE 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10151.203.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 9.65e-57 / Id = 54.09 Expect = 5.12e-31 / Id = 56.06 Sequence A0A6H5JB41_9PHAE D8LLX3_ECTSI
Match Name E-value Identity Description
A0A6H5JB41_9PHAE 9.650e-57 54.09 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLX3_ECTSI 5.120e-31 56.06 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria
Seed ortholog score 60.1
Seed ortholog evalue 1.5e-06
Seed eggNOG ortholog 251221.35212229
Hectar predicted targeting category other localisation
EggNOG free text desc. Alternative locus ID
EggNOG OGs 1G70P@1117,COG0457@1,COG0457@2
COG Functional cat. S
Best tax level Cyanobacteria
Best eggNOG OG NA|NA|NA
Ec32 ortholog description Protein of unknown function DUF3110
Ec32 ortholog Ec-14_002010.1
Exons 4
Model size 2130
Cds size 663
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815246.422809-UTR-L-elsbetiae_contig10151:2698..3043 1622815246.422809-UTR-L-elsbetiae_contig10151:2698..3043 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10151 2699..3043 +
1691682793.721879-UTR-L-elsbetiae_contig10151:2698..3043 1691682793.721879-UTR-L-elsbetiae_contig10151:2698..3043 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10151 2699..3043 +
1622815246.432991-UTR-L-elsbetiae_contig10151:3728..3759 1622815246.432991-UTR-L-elsbetiae_contig10151:3728..3759 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10151 3729..3759 +
1691682793.7320037-UTR-L-elsbetiae_contig10151:3728..3759 1691682793.7320037-UTR-L-elsbetiae_contig10151:3728..3759 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10151 3729..3759 +
1622815246.6427896-UTR-L-elsbetiae_contig10151:5934..7025 1622815246.6427896-UTR-L-elsbetiae_contig10151:5934..7025 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10151 5935..7025 +
1691682793.7690065-UTR-L-elsbetiae_contig10151:5934..7025 1691682793.7690065-UTR-L-elsbetiae_contig10151:5934..7025 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10151 5935..7025 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815246.442551-CDS-L-elsbetiae_contig10151:3759..3921 1622815246.442551-CDS-L-elsbetiae_contig10151:3759..3921 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10151 3760..3921 +
1691682793.7405925-CDS-L-elsbetiae_contig10151:3759..3921 1691682793.7405925-CDS-L-elsbetiae_contig10151:3759..3921 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10151 3760..3921 +
1622815246.5399675-CDS-L-elsbetiae_contig10151:4192..4408 1622815246.5399675-CDS-L-elsbetiae_contig10151:4192..4408 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10151 4193..4408 +
1691682793.7517047-CDS-L-elsbetiae_contig10151:4192..4408 1691682793.7517047-CDS-L-elsbetiae_contig10151:4192..4408 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10151 4193..4408 +
1622815246.5490453-CDS-L-elsbetiae_contig10151:5649..5934 1622815246.5490453-CDS-L-elsbetiae_contig10151:5649..5934 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10151 5650..5934 +
1691682793.760245-CDS-L-elsbetiae_contig10151:5649..5934 1691682793.760245-CDS-L-elsbetiae_contig10151:5649..5934 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10151 5650..5934 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10151.203.1
>prot_L-elsbetiae_contig10151.203.1 ID=prot_L-elsbetiae_contig10151.203.1|Name=mRNA_L-elsbetiae_contig10151.203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
MDETIPGKVGAAAIQKQIDSIRTRRTRGGDSSPGGRIHWATSKASGDRAA AAAAISALPRAVWVLIFGQGSSQFSSGCAQRGLYCLWSKGLNSAVAFQER DGALRYAFKLRARGLGVPGPTRVAMKDLQRFCSDNGFGVWVVPADVVPEA PQRTKNVMGFDPAAGDSRRSMQGGGGWGGRGDDMFPSSSSSEEEQERSVL TPEDVRKWRADFERLYAQDE* back to top mRNA from alignment at L-elsbetiae_contig10151:2699..7025+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10151.203.1 ID=mRNA_L-elsbetiae_contig10151.203.1|Name=mRNA_L-elsbetiae_contig10151.203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4327bp|location=Sequence derived from alignment at L-elsbetiae_contig10151:2699..7025+ (Laminarionema elsbetiae ELsaHSoW15)CACGAGGTCGGGCGTAGGCCGCCGACATTTAGAACATCCATCTACGTGCC
AGCGGTAGGTCCCTGTAGTTCACTCGCTCCCCTTTCGGTTCTCCTCGTCT
ACAATCAGGCATGTTTGATTGTAAGAACGGGTTGATTCAAAGGTAGGTTT
CAGATCCCTTTGCCAACATATATCCAGTCTAGATTCTAGTACTTGTAGCT
GTTCATCCCAAATCGTAAAAACACACGAATCCGTCCGCGTTCCCGTTCGC
AGGATTTGTCGTGCCCTTACCAAGACTCTCAGGGCAGCCCAAGCTTGGGC
AGCCCGTCTGCGTGCGAGCAGTCTCGATGGCGTCAGCAGCTCCAG GTATT
TGTGTTTAATTATGAAAACAATTTTCATTCATTTGTTCATTTTATATCAT
CTACCAATCTACATTGTTTGTGGTGCTTTGGATATGAGTTCGATCTGTGG
ATCCAAGGGGTTACGTGTATGTGTGTGGGTTGTGCGGGTTGATCCTGCGG
AGAGTTAAAGAGTCACCGAGCTCACTACATGTTCTGCTTGTTCTTGCTGT
GTATGTATGTGTATACGTCCCTGCCGTTCTGGGCTAACTCAGTTCCTACA
TTCAACACCAACCGCAAGACGGTGCGGTGGGGCCTCGACTAACACCGGGG
AACTACTGTATGCACTGTTGTCGTATTGTCTGCAACCTGCGTAACCCCCC
TCACCGTAATTGTTGTGCATCGTGGGATGTACGTAGTTGAACGATCAACG
CCTTGCTCTACACATTGCCTGATATAGGGAGTTAGCTAATGGTTCGCGGA
TGGGAAAGTAAGTTCAGCTTTTGACTGATTGCTGTGTCACAAAAAAAGGA
CGCTAGCCCTATCAGAATGGATTTTTGTAAGATGCAGCTTGTTCTGGTTC
CAACCCCATCCACCCCTAGGCCCTACGCCACAAAAGCCATCCGTATACCC
ACCCACAGCAGTAGCTCTTTGCTGACTCTCATCCTAGCGTCCTAACCCTT
GGTATTCCATTTCGCCAATTGAGCAGGCAGCCACAACAACAACAACAACA
ACAACAACAAC ATGGATGAAACCATCCCAGGCAAGGTCGGGGCCGCCGCC
ATCCAGAAGCAAATCGACTCGATCAGGACGAGGCGAACAAGGGGGGGCGA
CAGCAGCCCAGGGGGCCGCATACACTGGGCTACGTCCAAGGCGTCAGGGG
ACCGCGCGGCAGCAGCGGCGGCG GTAAGGAAAATAAAATAAAAGTGTTTT
AGATAGTATGCAGTCTACTGGATACACCGAACATAGCCCAGAACCATCCA
AGGGCACGAAAGTTCTTTGTCTCTAGAAAGGACATACATACGCAGAGCGA
TTGAACACCTGATCCTCCCGCTTTAGGCGCCACACCTACAAACCCATGTG
CCCCCCCCCCCCCCCCCCCTACTCCCCTTATTTTTTAATCCGAGCCCCCG
AACCTCCACCCAGCTTTTCCCCCCAACGTCCCACCGTACCGCAGATCTCT
GCCCTGCCGCGCGCGGTGTGGGTTCTGATCTTCGGTCAAGGATCGTCGCA
GTTTTCTTCCGGTTGCGCGCAGCGAGGGCTCTATTGCCTTTGGTCCAAGG
GCCTCAACTCCGCCGTGGCCTTTCAAGAGCGCGACGGGGCGCTGCGCTAC
GCGTTCAAGCTCAGGGCCAGGGGGCTCGGCGTCCCGGGCCCTACGCGCGT
CGCAATGAAG GTGAGAGAGAGAGGAACATCAGACGGAGCTCTCTGCTGTT
GCTGTTACGTACTTCCTCTGTCCCATAAGCAAAGGCCCTTATGGGGGGCA
AATCATATCTCGCCAATGGAGTTGCCTATGATGCTTTTGCAATAGATACA
GTTAAGTTTGGCGAAAAGCTAAAGATGAGGTGATGCTCGTGAAGTACAAA
ATTGGAGTCGTACGTGCTGAGAATGAGTGGGTTGAATCATTCGACCAAAT
TGTGGCTGATTTCGGCCGATATTTGACGATTTTGGCCTATTTTCGTAACA
GATGTACTCGGTATCATGCTGACATCCTTTCGTGCGAGGCATAGGCATCG
TCCATCAGGGATGAAGCGGAAGCAAAAAGCAACTTGGGGCGTATTGTAGC
GTTTTTCAGCCATTTTCCGGGTTTTCCATATTCTTCTCTGTTTTCCGGAA
AGGAGCCAAATACGGCCTTTTTAGCCGCCTGTTCTTTATTCGACCGTTCG
TGCATGCAGAGTGGTGCGTGCCAAACACAAAAAAGGGGGTTTCAACTCAA
AAAACACCATTTTTAAGAACAAGTAGATTATTCTACGGCATCAGACACCG
TTGAGGGTCCGTGTAATCCGAAAGGGCCTTTACTTACAGGGACACACGCA
AGGCACCCACTACTTGATGTTTTTGAGCCCTCAGCAGCGTGGCTACCTCG
TACACCCGGGGGTAGGGTGGGGGGGGCATTGTTTTTCCGAACGGACGGCC
ACACTTTTAGAAGGATGGCATCATGCAATAACTACATACCTTATGGAACT
ACTCCATCAGCCGGGATGTACGGAGTGAGCCTGTGCCACTGGTTCCAACT
ATGCTGCACACCTTTTGAGGCGAAAAGAGAAAGAGAGGGTGTTTCCAGAA
GAAAAGTGGGTGGAGGGCAGCATCAATCTCTTTACCAGGGGTGTACACAA
AGATAAGATACAAACATCCGGAAAAAACAACCGCGTTTGGTGTTGCGCGT
GTACAGTATGCGTGCTCACAGTCCCGCCATACAGTAGCGATTCTCTGCTG
CTTTCCACTTCCCACCCGTTCAGCAAGCGGCATCCATTTCCATTTTTTGC
GCGTGACCGTCGCTCACGAGCGAAACCATTCATATGTCTCATCCTTGTTT
ACATAGTTTGTTGTGCGTCGCAGCCTGCTCCGCGTCGTCGATTGTTTCGG
TTCATTTGGCCCCACACCATTCGGACACGACCAACCTTGCGCGACGTGCA
GGACCTGCAGCGCTTTTGCAGCGACAACGGCTTCGGCGTGTGGGTGGTCC
CCGCCGATGTCGTGCCTGAGGCTCCGCAGAGGACTAAGAACGTTATGGGC
TTCGACCCTGCGGCAGGGGATTCGCGAAGATCGATGCAGGGCGGTGGTGG
CTGGGGGGGAAGGGGAGATGATATGTTCCCGTCGTCGTCTTCATCAGAGG
AAGAGCAGGAGAGGTCTGTCTTGACCCCAGAGGACGTACGCAAATGGCGC
GCTGATTTCGAGAGGCTGTATGCGCAGGACGAATGA AGAAGGGACCCACC
AAAGAGTATTGGTTGGTGCATTTCCGACCGAAATAACCTCATATTTAACA
CGAATATATCGGCTGTGTCGGCAGCATGCACAGCATGAAGTATGCAGTGC
TCTTCGAGAGAGAGGGGCCAAGACGGAGAGCTTGCTGGTCATGCCTGTTT
ACATGCGTTGAATGCATATATATGTCACCATAGACGAACTTCCTCGACGC
AACTATGGGTGGGCGTTGGTGCATCATTTCGTACTGCACCCCGTTCCCTC
TCTCTCGCCATCGAGAATTGAAACCCCGGCGTGTCCTCTACGCTAAATAC
AAATCATACATTTTCGTAGTACAAGAGATGCGCCTGCCTGTAGAACCCGA
TAGGCAACACACGGCACAAGGGGAGGATGATGGTGTGTTGTGTAGAGATT
TGAAAGAAAGAGCTGCCGCGCTGTGTTTGATTTGATTGTTGTTCGGTTCA
TGTAAAGAAGGAGAAGGAGCCCAGTTGCAAACGAGCAACCCACTCGCGGC
GTTTGTTTTTGGGGTGGCTGGCGTGTACTTGCAGTGTGTGTGTAGCCGGT
GGGCGAAAATGATACAAAACTCGTGTTGATGTTGTATTTATTCATACAGA
ATAAGGTAAAACGGTGGTTGTGCACTGATGAATAATCTTGGCAACGCAGA
AATTTGACCACATACTTTGCGGGGTGGTTTGTGGTGTGGTGTTGCGCGGA
AAGCGCGTGGTGCGCTTGTGGGGTTTGTTTGACTACATACCAACTTCGTT
CCCTGTCTTTTCATGTATGACCTGTCAAGAAACTCAATGGAGATTGACAG
ATAAAAAAGGGGAGTCTATCTAGTAGTTATGGACCTGGCTGGGTGTGTAT
GTGTGGCAGACTTGGTCGGAAAGAGGAGTTCTATAGACGAGCGGAGGCGG
CGGTGGTTGGTTTTCGTTACAACGTACAGCATCGGAGGTGTAACCTATGT
GGCCTCATTCGGTATCAATACCCAGTAGATCAGATAGTAGGTGGTGTAGT
CTACATTTTACCTGTAGACTTATACATAAGACGTACATATACATACTTTT
TGTACGTAGACTACGTAGGCTATCTAT back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10151:2699..7025+
>mRNA_L-elsbetiae_contig10151.203.1 ID=mRNA_L-elsbetiae_contig10151.203.1|Name=mRNA_L-elsbetiae_contig10151.203.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig10151:2699..7025+ (Laminarionema elsbetiae ELsaHSoW15) ATGGATGAAACCATCCCAGGCAAGGTCGGGGCCGCCGCCATCCAGAAGCA AATCGACTCGATCAGGACGAGGCGAACAAGGGGGGGCGACAGCAGCCCAG GGGGCCGCATACACTGGGCTACGTCCAAGGCGTCAGGGGACCGCGCGGCA GCAGCGGCGGCGATGGATGAAACCATCCCAGGCAAGGTCGGGGCCGCCGC CATCCAGAAGCAAATCGACTCGATCAGGACGAGGCGAACAAGGGGGGGCG ACAGCAGCCCAGGGGGCCGCATACACTGGGCTACGTCCAAGGCGTCAGGG GACCGCGCGGCAGCAGCGGCGGCGATCTCTGCCCTGCCGCGCGCGGTGTG GGTTCTGATCTTCGGTCAAGGATCGTCGCAGTTTTCTTCCGGTTGCGCGC AGCGAGGGCTCTATTGCCTTTGGTCCAAGGGCCTCAACTCCGCCGTGGCC TTTCAAGAGCGCGACGGGGCGCTGCGCTACGCGTTCAAGCTCAGGGCCAG GGGGCTCGGCGTCCCGGGCCCTACGCGCGTCGCAATGAAGATCTCTGCCC TGCCGCGCGCGGTGTGGGTTCTGATCTTCGGTCAAGGATCGTCGCAGTTT TCTTCCGGTTGCGCGCAGCGAGGGCTCTATTGCCTTTGGTCCAAGGGCCT CAACTCCGCCGTGGCCTTTCAAGAGCGCGACGGGGCGCTGCGCTACGCGT TCAAGCTCAGGGCCAGGGGGCTCGGCGTCCCGGGCCCTACGCGCGTCGCA ATGAAGGACCTGCAGCGCTTTTGCAGCGACAACGGCTTCGGCGTGTGGGT GGTCCCCGCCGATGTCGTGCCTGAGGCTCCGCAGAGGACTAAGAACGTTA TGGGCTTCGACCCTGCGGCAGGGGATTCGCGAAGATCGATGCAGGGCGGT GGTGGCTGGGGGGGAAGGGGAGATGATATGTTCCCGTCGTCGTCTTCATC AGAGGAAGAGCAGGAGAGGTCTGTCTTGACCCCAGAGGACGTACGCAAAT GGCGCGCTGATTTCGAGAGGCTGTATGCGCAGGACGAATGAGACCTGCAG CGCTTTTGCAGCGACAACGGCTTCGGCGTGTGGGTGGTCCCCGCCGATGT CGTGCCTGAGGCTCCGCAGAGGACTAAGAACGTTATGGGCTTCGACCCTG CGGCAGGGGATTCGCGAAGATCGATGCAGGGCGGTGGTGGCTGGGGGGGA AGGGGAGATGATATGTTCCCGTCGTCGTCTTCATCAGAGGAAGAGCAGGA GAGGTCTGTCTTGACCCCAGAGGACGTACGCAAATGGCGCGCTGATTTCG AGAGGCTGTATGCGCAGGACGAATGA back to top