mRNA_L-elsbetiae_contig1014.191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1014.191.1
Unique NamemRNA_L-elsbetiae_contig1014.191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1014.191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1014contigL-elsbetiae_contig1014:19794..21052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.3502102-CDS-L-elsbetiae_contig1014:19793..201111622815245.3502102-CDS-L-elsbetiae_contig1014:19793..20111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 19794..20111 -
1691682793.0636895-CDS-L-elsbetiae_contig1014:19793..201111691682793.0636895-CDS-L-elsbetiae_contig1014:19793..20111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 19794..20111 -
1622815245.360868-CDS-L-elsbetiae_contig1014:20965..210521622815245.360868-CDS-L-elsbetiae_contig1014:20965..21052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 20966..21052 -
1691682793.0783212-CDS-L-elsbetiae_contig1014:20965..210521691682793.0783212-CDS-L-elsbetiae_contig1014:20965..21052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1014 20966..21052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1014.191.1prot_L-elsbetiae_contig1014.191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1014 19794..21052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1014.191.1

>prot_L-elsbetiae_contig1014.191.1 ID=prot_L-elsbetiae_contig1014.191.1|Name=mRNA_L-elsbetiae_contig1014.191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MGRGREAGLLPENAVLRTDPLEGTRDEDELSRPSSGAMAASPEANQRWSS
SSYPPGLLVLSQPSQEFRSPDDNDGDDGCDAEDDSADAIRGRSSARGWLG
RRGEAGSSSAEDRSAGQRSPSEEAEVASVARTTGC
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mRNA from alignment at L-elsbetiae_contig1014:19794..21052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1014.191.1 ID=mRNA_L-elsbetiae_contig1014.191.1|Name=mRNA_L-elsbetiae_contig1014.191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1259bp|location=Sequence derived from alignment at L-elsbetiae_contig1014:19794..21052- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCGGGGGAGAGAGGCCGGCCTTCTTCCCGAGAACGCGGTGCTCCG
GACGGACCCCTTGGAAGGAACCCGCGACGAGGACGAGGTGCGTCTCGAGA
ACAGGGCGAGAGCTCATGCAAGAAGCATCTTTCCCGGGAAAAGCCTGTGT
GACACAGGAGGGTTGCCCACGTTTCGATCGATCTGGTGTACCAATGCAGT
GGCTTGCTCGTTCATGCCGAATCTTGACGCTCACCCATCCCCCGCGCTGC
CTGCCCCCCGTTTGAGTGCCCGTGGAAGTCTTCTGAATGGTTTTTATCAC
AACAATAGTGCAGTGGTTTTGACTCTCTCCCATCCCCCGCCCTACCTACC
CCCTTGAGCGCCCGTGGAAGTCTCCTGAATGTTTTTCATCACAACAGTAG
TGCAGTGGAGCCATGTCGAGCAATCGTTCATGCACGGGTTTTTGTGGCAC
ATGCCGTCGCGGTGCCGGGGCCAACATTGGACCCGGTTCTTGCTCTCGAG
GAAGAGCTCAGTTTACTAACCCTCCGTCCGACTCGACGAACACGGAGTAA
CCCATCCCTGTGGACTCTGTCGGGGCTCAAGGACCTTTTATACTGCTGTG
ACAAAATAGCGACACAGAGAACCTACACCTCTCGCTCTCTCACCTACGCC
CCCCCTCCTCAGACTGAAAAGCTTTTGCACAGCTCTCTGCCGATACTGGC
CCCGTCTTGATCCTCCAAATCGTGCATTACTTCTTCCTCCATCCGAGATA
GCTCGCAGCTCTCTACCGAGCAGCTCAAGTGGATCAGCGATGGAGTCCCT
AGATTAACCCCTCTCCAGCAGCAAACTGAAAACCTGCGATATTTCTCCCC
TCCCCCCGCCCCGTCCCGCGCGCGCCCCCGCACGTCCACGCTACCACTGC
GCCCCCGTATTTTTTCTTCCCCGGAAACACCCCGCATGCAGTTATCCCGC
CCCAGCAGCGGCGCGATGGCGGCGTCGCCCGAAGCAAACCAACGCTGGAG
CTCCTCGTCGTACCCACCGGGGCTGCTGGTCCTGAGCCAGCCCTCCCAAG
AGTTTCGCTCTCCCGACGACAATGATGGTGACGATGGGTGCGACGCGGAA
GACGACTCGGCCGATGCCATACGCGGGCGGTCTTCGGCCAGAGGGTGGCT
GGGGCGGCGAGGCGAGGCGGGGTCATCGAGCGCGGAGGACAGGTCTGCGG
GACAGAGAAGCCCCTCGGAGGAGGCGGAAGTAGCGTCCGTAGCTCGGACG
ACTGGGTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1014:19794..21052-

>mRNA_L-elsbetiae_contig1014.191.1 ID=mRNA_L-elsbetiae_contig1014.191.1|Name=mRNA_L-elsbetiae_contig1014.191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1014:19794..21052- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCGGGGGAGAGAGGCCGGCCTTCTTCCCGAGAACGCGGTGCTCCG
GACGGACCCCTTGGAAGGAACCCGCGACGAGGACGAGATGGGGCGGGGGA
GAGAGGCCGGCCTTCTTCCCGAGAACGCGGTGCTCCGGACGGACCCCTTG
GAAGGAACCCGCGACGAGGACGAGTTATCCCGCCCCAGCAGCGGCGCGAT
GGCGGCGTCGCCCGAAGCAAACCAACGCTGGAGCTCCTCGTCGTACCCAC
CGGGGCTGCTGGTCCTGAGCCAGCCCTCCCAAGAGTTTCGCTCTCCCGAC
GACAATGATGGTGACGATGGGTGCGACGCGGAAGACGACTCGGCCGATGC
CATACGCGGGCGGTCTTCGGCCAGAGGGTGGCTGGGGCGGCGAGGCGAGG
CGGGGTCATCGAGCGCGGAGGACAGGTCTGCGGGACAGAGAAGCCCCTCG
GAGGAGGCGGAAGTAGCGTCCGTAGCTCGGACGACTGGGTGCTTATCCCG
CCCCAGCAGCGGCGCGATGGCGGCGTCGCCCGAAGCAAACCAACGCTGGA
GCTCCTCGTCGTACCCACCGGGGCTGCTGGTCCTGAGCCAGCCCTCCCAA
GAGTTTCGCTCTCCCGACGACAATGATGGTGACGATGGGTGCGACGCGGA
AGACGACTCGGCCGATGCCATACGCGGGCGGTCTTCGGCCAGAGGGTGGC
TGGGGCGGCGAGGCGAGGCGGGGTCATCGAGCGCGGAGGACAGGTCTGCG
GGACAGAGAAGCCCCTCGGAGGAGGCGGAAGTAGCGTCCGTAGCTCGGAC
GACTGGGTGC
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