mRNA_L-elsbetiae_contig10138.187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10138.187.1
Unique NamemRNA_L-elsbetiae_contig10138.187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10138.187.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.130e-32
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:  127 EDDDVFAQELIDAAVLVERDISNTQTEMDYAAVEERREGISAELRQGNPTMTAEDLEAEIRAELKTVYDMWQHHLDALLDVQPTLKEAMAERGLSEAAVFVKGDA 441
            EDDD F QEL+DAA++VERDISNT  +MD  A EERR  I+ ELR+ +P M+ EDL+AE+ AE+ TV DMWQH LDAL DVQPTL EA+A+RGL E AV V+ +A
Sbjct:   68 EDDDAFEQELVDAAIVVERDISNTLGQMDNPAYEERRRNITNELRKRDPGMSEEDLQAEVSAEMNTVQDMWQHRLDALYDVQPTLAEALADRGLPEVAVLVRAEA 172
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BLAST of mRNA_L-elsbetiae_contig10138.187.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.010e-29
Identity = 64/100 (64.00%), Postives = 80/100 (80.00%), Query Frame = 1 
Query:  142 FAQELIDAAVLVERDISNTQTEMDYAAVEERREGISAELRQGNPTMTAEDLEAEIRAELKTVYDMWQHHLDALLDVQPTLKEAMAERGLSEAAVFVKGDA 441
            F QEL+DAAV+VERDISNT  +MD  A EERR  I+ E+R+G+P M+ EDL+AE+ AE+KTV DMWQH LDAL +VQPTL EA+A+RGL E AV V+ +A
Sbjct:  265 FEQELVDAAVVVERDISNTLGQMDNPAYEERRRNITNEVRKGDPGMSEEDLQAEVSAEMKTVQDMWQHRLDALHEVQPTLAEALADRGLPEMAVLVRAEA 364
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10138.187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF11_9PHAE7.130e-3263.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRW3_ECTSI1.010e-2964.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10138contigL-elsbetiae_contig10138:727..3036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue2.7e-26
Seed eggNOG ortholog2880.D8LRW3
KEGG koko:K06767,ko:K10779,ko:K10875,ko:K10876
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG1015@2759,KOG1016@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Exons4
Model size467
Cds size465
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10138.187.1prot_L-elsbetiae_contig10138.187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10138 727..3034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.2177806-CDS-L-elsbetiae_contig10138:726..9361622815245.2177806-CDS-L-elsbetiae_contig10138:726..936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 727..936 +
1691682792.97742-CDS-L-elsbetiae_contig10138:726..9361691682792.97742-CDS-L-elsbetiae_contig10138:726..936Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 727..936 +
1622815245.2290275-CDS-L-elsbetiae_contig10138:1233..13311622815245.2290275-CDS-L-elsbetiae_contig10138:1233..1331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 1234..1331 +
1691682792.9892201-CDS-L-elsbetiae_contig10138:1233..13311691682792.9892201-CDS-L-elsbetiae_contig10138:1233..1331Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 1234..1331 +
1622815245.2402954-CDS-L-elsbetiae_contig10138:2225..23501622815245.2402954-CDS-L-elsbetiae_contig10138:2225..2350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 2226..2350 +
1691682792.999299-CDS-L-elsbetiae_contig10138:2225..23501691682792.999299-CDS-L-elsbetiae_contig10138:2225..2350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 2226..2350 +
1622815245.2523174-CDS-L-elsbetiae_contig10138:3002..30341622815245.2523174-CDS-L-elsbetiae_contig10138:3002..3034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 3003..3034 +
1691682793.0086248-CDS-L-elsbetiae_contig10138:3002..30341691682793.0086248-CDS-L-elsbetiae_contig10138:3002..3034Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10138 3003..3034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10138.187.1

>prot_L-elsbetiae_contig10138.187.1 ID=prot_L-elsbetiae_contig10138.187.1|Name=mRNA_L-elsbetiae_contig10138.187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=155bp
GGFTSPAAAASSAASVAGDSGAGDEDGAGSGGGDGGLLSPRGEDDDVFAQ
ELIDAAVLVERDISNTQTEMDYAAVEERREGISAELRQGNPTMTAEDLEA
EIRAELKTVYDMWQHHLDALLDVQPTLKEAMAERGLSEAAVFVKGDAAAG
RGDPG
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mRNA from alignment at L-elsbetiae_contig10138:727..3036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10138.187.1 ID=mRNA_L-elsbetiae_contig10138.187.1|Name=mRNA_L-elsbetiae_contig10138.187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2310bp|location=Sequence derived from alignment at L-elsbetiae_contig10138:727..3036+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTTTCACGAGCCCCGCCGCTGCCGCCTCCTCCGCCGCCTCCGTCGC
CGGTGATAGTGGTGCCGGCGACGAGGATGGAGCAGGGAGCGGCGGCGGCG
ACGGCGGGCTTCTATCCCCGCGGGGTGAAGACGATGATGTGTTCGCCCAG
GAGCTGATAGACGCCGCGGTTCTGGTGGAGAGGGACATCTCTAACACTCA
GACGGAGATGGTGAGGGGCGGCAGTATGTATGTGTCTCGTGTTGTTGTTG
TTGTGGCTGCTGTTGCTGTGCCTGCTGTTCTTGCTCCTGCTGCTGCTGCT
GTTACTGCTGTCGTTGCTGTTGCTGTTGCTGTTGCTGTTGTTGTTATTCT
CTCGTGGTTTACTTATGACGAATGCAGCTGCGGCGGCGGCGGCGGCTTTT
TGTCCTGTTCTTGCCGCTGATGCCCGCGGCGATTGGTGCTGATGCCGCTG
CTCCCCGCGCCGTACCGCGTCCCACCTGCCCCCATGCGCGCGCGCGACCC
CTGAAAGGACTACGCCGCGGTAGAGGAGCGTAGGGAGGGGATATCAGCGG
AACTCCGGCAGGGCAACCCAACAATGACCGCGGAGGACCTCGAGGCCGAG
ATCAGGTGCGCCTTCCCATCTGTGTTTCCTCGGGGGTGTGTGTGCTCTAC
TACATAAACAGGAAATCACCGGCGCAAGCTGTAGCAACAGCTTATCCCCT
AGAGTGTAAAGAACGCCGGAGGCGAGAGACGCCAGAATGGATGGGAATGG
GAACGAAGGCACAAACATCATTTAAGCACGCTTGAAAAGGCGGGAAGAGT
GGTAACTTGGCTCTGCCTCACGGCCCTCGCGAATCGTGTGGTGCGCGGCG
ATAGACCAAGGTACCAGCACCATCCACCCACCTACCTACTCGAAGTATGA
GTTAGACCGACACAGTCAAAGCTAGATTGTTGCACAGGCAGGGAGGGGGT
GGCCATTGCCCACAGGCGTGGATCTCCGGGACGTCTCGTCGATAGCTTTT
GAAATTGTTTTGAGATGCACATGCACACGAAGAGGAAGGCGCTCTTGTGT
CTCTAGGCGGGCAAGACGTCTTTTTTGGTGTTTTACCGTAAGTGTGCGAA
GGTTCGCACCCCCGTGTAAGTGTGCGAAGGTTCGCACCCCCGTGTTAGCA
TTTTTCTGAAGCGTATTTCTCCACAACCAGGAGGGTGCGAACACTAACTG
ATACCTCTCTGGAAAGCCCCCGGCGAGACGTTTCGAAAACCACCCTTTTC
GGCAGTGGTACCCTCCTGGTTGTGGAGAAATACGCTTATAGAAGAACGCT
AGCACGGGGGTGCGAACCTTCGCACACTTACGGTAATCCCTTAAAGAGGG
AGGACAAAAGAAAGATACCGAGTGAATACGAGGACCTACCCGTCGTCGCC
GTCCTCTTTTCTTCTGGCGCCGGTTTTGTTCGTGGTGGCGGTGGTGGTAT
TTAGTGGTGGTATTTTTCTCCCCCCCGCTCGCTCGCTGTTGACACCAAGG
GCCGAGCTGAAGACGGTGTACGACATGTGGCAGCACCACCTGGACGCGCT
GCTGGACGTCCAGCCCACCCTGAAGGAGGCCATGGCGGAGAGGGGGCTGT
CCGAGGCCGCGGTGTTTGTCAAAGGTGAGGAAGCAAGGAGGGGGGCACAG
CGATTGGGCAGTTAAAATCCCGATGCTTTGCTTCGCGGCGGGAAGAGAAG
AGTGTAGCTTGATCAGCGCTTTTTCCTGCTGGTGGTTGGGAGTTTCGTGG
TGTGTGCCGGCGGGATGCTCGTCTAGGCAGCTATTCCAAGTAAGAAGAAG
TCTGTCGGACGTTTGTATATATATATATGCCTTGCAGCCGCCACCCCCGG
CGTGAGGTGAGGTTGCGCGGCCGCGGCGAAACAGGGCCGAATCGACGCTG
GTTACGAGCCTTCTTGCGTGGTGCTTTGGGCACGAATAGTGTGAATAAAA
CCCGGGGGTGCTCCGTTCCGGGTTGGTGAGAGTGCAAAAGGTGCGCATGG
TGATGATGGTCATGGTGGTGGTGGTGATGGTGATGATGATGATGGTGATG
ACAGTAGTGATGATGGTGATGATGGTGGTGGTGGTGATGGTGATGATGAT
GATGATGGTAATGATGATGATGATGATGATGACAGTGATGATGGTGATGG
TAATGGTGATGGCGATGATGATGATGATGATGATGGTGGTGGTGGTGGCG
ATGGCGGTGTAGTGATTGCAATGAGTGCCTCTCTAAATGGCCACCTTTTC
ACCTGCACGCTCCTCGGCGGCCGCAGGCGACGCGGCAGCAGGCCGTGGGG
ACCCGGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10138:727..3036+

>mRNA_L-elsbetiae_contig10138.187.1 ID=mRNA_L-elsbetiae_contig10138.187.1|Name=mRNA_L-elsbetiae_contig10138.187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=930bp|location=Sequence derived from alignment at L-elsbetiae_contig10138:727..3036+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGTTTCACGAGCCCCGCCGCTGCCGCCTCCTCCGCCGCCTCCGTCGC
CGGTGATAGTGGTGCCGGCGACGAGGATGGAGCAGGGAGCGGCGGCGGCG
ACGGCGGGCTTCTATCCCCGCGGGGTGAAGACGATGATGTGTTCGCCCAG
GAGCTGATAGACGCCGCGGTTCTGGTGGAGAGGGACATCTCTAACACTCA
GACGGAGATGGGTGGTTTCACGAGCCCCGCCGCTGCCGCCTCCTCCGCCG
CCTCCGTCGCCGGTGATAGTGGTGCCGGCGACGAGGATGGAGCAGGGAGC
GGCGGCGGCGACGGCGGGCTTCTATCCCCGCGGGGTGAAGACGATGATGT
GTTCGCCCAGGAGCTGATAGACGCCGCGGTTCTGGTGGAGAGGGACATCT
CTAACACTCAGACGGAGATGGACTACGCCGCGGTAGAGGAGCGTAGGGAG
GGGATATCAGCGGAACTCCGGCAGGGCAACCCAACAATGACCGCGGAGGA
CCTCGAGGCCGAGATCAGGACTACGCCGCGGTAGAGGAGCGTAGGGAGGG
GATATCAGCGGAACTCCGGCAGGGCAACCCAACAATGACCGCGGAGGACC
TCGAGGCCGAGATCAGGGCCGAGCTGAAGACGGTGTACGACATGTGGCAG
CACCACCTGGACGCGCTGCTGGACGTCCAGCCCACCCTGAAGGAGGCCAT
GGCGGAGAGGGGGCTGTCCGAGGCCGCGGTGTTTGTCAAAGGGCCGAGCT
GAAGACGGTGTACGACATGTGGCAGCACCACCTGGACGCGCTGCTGGACG
TCCAGCCCACCCTGAAGGAGGCCATGGCGGAGAGGGGGCTGTCCGAGGCC
GCGGTGTTTGTCAAAGGCGACGCGGCAGCAGGCCGTGGGGACCCGGGTGC
GACGCGGCAGCAGGCCGTGGGGACCCGGGT
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