mRNA_L-elsbetiae_contig10132.184.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10132.184.1
Unique NamemRNA_L-elsbetiae_contig10132.184.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10132.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10132contigL-elsbetiae_contig10132:4347..5627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionsimilar to putative alpha-6-fucosyltransferase
Ec32 orthologEc-12_003680.2
Exons2
Model size942
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10132.184.1prot_L-elsbetiae_contig10132.184.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10132 4663..5595 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.0239894-UTR-L-elsbetiae_contig10132:4346..46621622815245.0239894-UTR-L-elsbetiae_contig10132:4346..4662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10132 4347..4662 +
1691682792.8695083-UTR-L-elsbetiae_contig10132:4346..46621691682792.8695083-UTR-L-elsbetiae_contig10132:4346..4662Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10132 4347..4662 +
1622815245.0527885-UTR-L-elsbetiae_contig10132:5595..56271622815245.0527885-UTR-L-elsbetiae_contig10132:5595..5627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10132 5596..5627 +
1691682792.8962116-UTR-L-elsbetiae_contig10132:5595..56271691682792.8962116-UTR-L-elsbetiae_contig10132:5595..5627Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10132 5596..5627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815245.0339217-CDS-L-elsbetiae_contig10132:4662..49451622815245.0339217-CDS-L-elsbetiae_contig10132:4662..4945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10132 4663..4945 +
1691682792.8795307-CDS-L-elsbetiae_contig10132:4662..49451691682792.8795307-CDS-L-elsbetiae_contig10132:4662..4945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10132 4663..4945 +
1622815245.0437322-CDS-L-elsbetiae_contig10132:5284..55951622815245.0437322-CDS-L-elsbetiae_contig10132:5284..5595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10132 5285..5595 +
1691682792.8883126-CDS-L-elsbetiae_contig10132:5284..55951691682792.8883126-CDS-L-elsbetiae_contig10132:5284..5595Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10132 5285..5595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10132.184.1

>prot_L-elsbetiae_contig10132.184.1 ID=prot_L-elsbetiae_contig10132.184.1|Name=mRNA_L-elsbetiae_contig10132.184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
MNGQSGTCHTCNGAVVSKTWLPGRLLLSITVLLLYCIGFSRGGIEFEEHQ
QGQLTEAFPKGWTEEMLAYGGKDRCPTVRDVYEWRNAGWGSNMNRIRNRW
ILSMSAGINSFAVYFPSGVLGDVRCPSAVNFTVSCLPFGLTSCKSQRART
CHRASTCPETNNSLNRVRDHRAFKIGYRVVFFRACRCFISKTCTGRC*
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mRNA from alignment at L-elsbetiae_contig10132:4347..5627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10132.184.1 ID=mRNA_L-elsbetiae_contig10132.184.1|Name=mRNA_L-elsbetiae_contig10132.184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1281bp|location=Sequence derived from alignment at L-elsbetiae_contig10132:4347..5627+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAAAACAAATCATCAAACAAACGCAGATAGTCTGGAGCCCTCCGCTCC
CCTCTTCACGCTGGGTGAGGTGGAAACAAAAGTGGAAAAGCCGACATCAT
CAACCGCGGCAGATACACCCCCCGGTTCGATCTTATCTTCGTACCCCGAC
AAATTGCCAGCGTTTTTCGCGCCGTGTTCATGCCGGTCAGGCCCACCAGT
AATCTAGTCCTCCCCACCCTCCAGGACAATATATTGCTTCACACTACCGT
CCTCTTCACAGTTGCTCTCTCGATTGCCGTCTTTTCCTGTTTCCTGCAGG
TATTCTGCCGTATATCATGAATGGTCAAAGTGGAACCTGCCACACCTGTA
ACGGGGCCGTAGTTTCGAAGACTTGGCTCCCAGGCAGATTGCTCCTGTCG
ATCACGGTGCTCCTGTTGTACTGTATCGGCTTCTCGAGGGGCGGAATTGA
GTTTGAAGAACACCAGCAAGGCCAGCTAACAGAGGCGTTTCCGAAGGGGT
GGACGGAGGAGATGCTTGCATACGGGGGCAAGGATAGGTGCCCCACTGTG
CGCGACGTCTACGAATGGAGAAATGCTGGCTGGGGCAGTAACATGAATCG
TGAGTCGCTTTACTTAAGCTAGCTTCTTTCAAGCTCTCGGCTACTACTGT
AAGCAATATTCGAGTACCACGATTTGGCTTGTCGTTTTTAGCCCCCGCTG
CAAAAAGGCGTGCAACAGGTCGGCAAAGATTGGTTGTTGAAGTTACCTAC
ATATACTGGGATATGCATGACGTTCGTGGTTGGCCCACCCGTTGGGTTGC
CACGAGGAATACGTAATAACTGATCACGTCCCTCCTTGGGGATAGAATAC
AGAAACCCACACGGGTGTACCTTCAGTCGTCTTATAGGGCGAATCCATCA
ACCTGAATGCAATCGCGAACCCAAATCTTTATCTCCAGGGATCCGGAATC
GCTGGATCTTGAGCATGTCCGCTGGGATAAACAGCTTTGCTGTGTATTTT
CCTTCGGGGGTTCTGGGGGACGTTAGGTGCCCATCGGCTGTCAACTTCAC
GGTAAGCTGTTTGCCCTTTGGTTTGACTTCATGTAAGTCACAGCGGGCAC
GGACTTGTCATCGGGCGTCTACCTGCCCAGAAACAAATAATAGTCTAAAT
CGTGTACGAGATCATCGGGCATTTAAAATAGGTTACCGGGTTGTGTTTTT
TCGTGCGTGTCGTTGCTTTATTTCGAAAACTTGCACGGGTCGCTGTTAGT
GGAATGTTGCTGATTGTATTGCAATAATTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10132:4347..5627+

>mRNA_L-elsbetiae_contig10132.184.1 ID=mRNA_L-elsbetiae_contig10132.184.1|Name=mRNA_L-elsbetiae_contig10132.184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig10132:4347..5627+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATGGTCAAAGTGGAACCTGCCACACCTGTAACGGGGCCGTAGTTTC
GAAGACTTGGCTCCCAGGCAGATTGCTCCTGTCGATCACGGTGCTCCTGT
TGTACTGTATCGGCTTCTCGAGGGGCGGAATTGAGTTTGAAGAACACCAG
CAAGGCCAGCTAACAGAGGCGTTTCCGAAGGGGTGGACGGAGGAGATGCT
TGCATACGGGGGCAAGGATAGGTGCCCCACTGTGCGCGACGTCTACGAAT
GGAGAAATGCTGGCTGGGGCAGTAACATGAATCATGAATGGTCAAAGTGG
AACCTGCCACACCTGTAACGGGGCCGTAGTTTCGAAGACTTGGCTCCCAG
GCAGATTGCTCCTGTCGATCACGGTGCTCCTGTTGTACTGTATCGGCTTC
TCGAGGGGCGGAATTGAGTTTGAAGAACACCAGCAAGGCCAGCTAACAGA
GGCGTTTCCGAAGGGGTGGACGGAGGAGATGCTTGCATACGGGGGCAAGG
ATAGGTGCCCCACTGTGCGCGACGTCTACGAATGGAGAAATGCTGGCTGG
GGCAGTAACATGAATCGGATCCGGAATCGCTGGATCTTGAGCATGTCCGC
TGGGATAAACAGCTTTGCTGTGTATTTTCCTTCGGGGGTTCTGGGGGACG
TTAGGTGCCCATCGGCTGTCAACTTCACGGTAAGCTGTTTGCCCTTTGGT
TTGACTTCATGTAAGTCACAGCGGGCACGGACTTGTCATCGGGCGTCTAC
CTGCCCAGAAACAAATAATAGTCTAAATCGTGTACGAGATCATCGGGCAT
TTAAAATAGGTTACCGGGTTGTGTTTTTTCGTGCGTGTCGTTGCTTTATT
TCGAAAACTTGCACGGGTCGCTGTTAGGGATCCGGAATCGCTGGATCTTG
AGCATGTCCGCTGGGATAAACAGCTTTGCTGTGTATTTTCCTTCGGGGGT
TCTGGGGGACGTTAGGTGCCCATCGGCTGTCAACTTCACGGTAAGCTGTT
TGCCCTTTGGTTTGACTTCATGTAAGTCACAGCGGGCACGGACTTGTCAT
CGGGCGTCTACCTGCCCAGAAACAAATAATAGTCTAAATCGTGTACGAGA
TCATCGGGCATTTAAAATAGGTTACCGGGTTGTGTTTTTTCGTGCGTGTC
GTTGCTTTATTTCGAAAACTTGCACGGGTCGCTGTTAG
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