mRNA_L-elsbetiae_contig10131.181.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10131.181.1
Unique NamemRNA_L-elsbetiae_contig10131.181.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10131.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10131contigL-elsbetiae_contig10131:649..1290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size642
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10131.181.1prot_L-elsbetiae_contig10131.181.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10131 725..1084 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.7639081-UTR-L-elsbetiae_contig10131:648..7241622815244.7639081-UTR-L-elsbetiae_contig10131:648..724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10131 649..724 +
1691682792.7060328-UTR-L-elsbetiae_contig10131:648..7241691682792.7060328-UTR-L-elsbetiae_contig10131:648..724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10131 649..724 +
1622815244.7916462-UTR-L-elsbetiae_contig10131:1084..12901622815244.7916462-UTR-L-elsbetiae_contig10131:1084..1290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10131 1085..1290 +
1691682792.7280478-UTR-L-elsbetiae_contig10131:1084..12901691682792.7280478-UTR-L-elsbetiae_contig10131:1084..1290Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10131 1085..1290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815244.7765896-CDS-L-elsbetiae_contig10131:724..10841622815244.7765896-CDS-L-elsbetiae_contig10131:724..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10131 725..1084 +
1691682792.717585-CDS-L-elsbetiae_contig10131:724..10841691682792.717585-CDS-L-elsbetiae_contig10131:724..1084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10131 725..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10131.181.1

>prot_L-elsbetiae_contig10131.181.1 ID=prot_L-elsbetiae_contig10131.181.1|Name=mRNA_L-elsbetiae_contig10131.181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MALCLAFLPVVQVCLRTQHTIIVQRASPDVSVHRRECQLCGCSTCLFVSR
ALFLFHYFFQSRAICVVGPSAWHVRLPSKFIITQRVSKVERKLVRAMPRA
SNLYNKQQSLRSRIEIFLS*
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mRNA from alignment at L-elsbetiae_contig10131:649..1290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10131.181.1 ID=mRNA_L-elsbetiae_contig10131.181.1|Name=mRNA_L-elsbetiae_contig10131.181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig10131:649..1290+ (Laminarionema elsbetiae ELsaHSoW15)
GTCTGTACGTTTTGTTTGGAGTGTCAACGGCGGCCGAGGTACATACAAGT
GTTGTGTGGCATACTCCTTCCGTTCGATGGCGCTCTGTTTAGCTTTTCTG
CCTGTCGTCCAAGTTTGTTTGCGCACTCAACACACAATAATAGTGCAACG
AGCGTCCCCAGACGTGTCCGTACACCGTCGGGAGTGCCAACTGTGCGGCT
GTAGTACATGTTTGTTTGTGTCACGTGCTCTTTTTTTATTTCATTATTTT
TTTCAATCCAGGGCCATCTGCGTAGTAGGGCCATCTGCGTGGCATGTACG
CTTGCCATCCAAGTTTATCATCACACAGAGAGTCTCTAAAGTGGAAAGAA
AATTGGTACGCGCGATGCCCCGGGCGAGCAATCTATATAATAAACAACAG
AGTCTTCGATCGAGGATAGAGATCTTCCTCTCATAAGTCAAGAGGTTGAA
GTGGGAAGATGAAGCCACCAATCGAGATAAGCACTCCTCCTCGGGAGATG
TGTCACGCCTCATCCGCTGTCCGCTGTTTGCTGTGTTTGCTGTTTGATGG
TTCGCTCACCCCCTCCCTCATTATATCCAAGGCTTAGATATCTAGATACG
TATGTATGTAGCACAAGGCAACAATTTCACAGCCCACTATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10131:649..1290+

>mRNA_L-elsbetiae_contig10131.181.1 ID=mRNA_L-elsbetiae_contig10131.181.1|Name=mRNA_L-elsbetiae_contig10131.181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig10131:649..1290+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTCTGTTTAGCTTTTCTGCCTGTCGTCCAAGTTTGTTTGCGCAC
TCAACACACAATAATAGTGCAACGAGCGTCCCCAGACGTGTCCGTACACC
GTCGGGAGTGCCAACTGTGCGGCTGTAGTACATGTTTGTTTGTGTCACGT
GCTCTTTTTTTATTTCATTATTTTTTTCAATCCAGGGCCATCTGCGTAGT
AGGGCCATCTGCGTGGCATGTACGCTTGCCATCCAAGTTTATCATCACAC
AGAGAGTCTCTAAAGTGGAAAGAAAATTGGTACGCGCGATGCCCCGGGCG
AGCAATCTATATAATAAACAACAGAGTCTTCGATCGAGGATAGAGATCTT
CCTCTCATAAATGGCGCTCTGTTTAGCTTTTCTGCCTGTCGTCCAAGTTT
GTTTGCGCACTCAACACACAATAATAGTGCAACGAGCGTCCCCAGACGTG
TCCGTACACCGTCGGGAGTGCCAACTGTGCGGCTGTAGTACATGTTTGTT
TGTGTCACGTGCTCTTTTTTTATTTCATTATTTTTTTCAATCCAGGGCCA
TCTGCGTAGTAGGGCCATCTGCGTGGCATGTACGCTTGCCATCCAAGTTT
ATCATCACACAGAGAGTCTCTAAAGTGGAAAGAAAATTGGTACGCGCGAT
GCCCCGGGCGAGCAATCTATATAATAAACAACAGAGTCTTCGATCGAGGA
TAGAGATCTTCCTCTCATAA
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