mRNA_L-elsbetiae_contig1012.170.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1012.170.1 vs. uniprot
Match: D7FT48_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT48_ECTSI) HSP 1 Score: 298 bits (763), Expect = 6.260e-93 Identity = 255/474 (53.80%), Postives = 297/474 (62.66%), Query Frame = 3 Query: 12 MENAIAKCGVLKRKAGMLRRKESKFYVLTNQGGLFQAKGFAAEFESLKLLLSLQGTSEVGVERSGSGDGGHVIKIHTRGQKAPPMDFEATSDSDTMLWYQVMMDVIELVGAINGDRAHAQPRPTMGGKFGDEGWYVEATGRMALYTLNVQNMWMVRDKREYDEATVLNWIASDR-ARGSGGGRGGA---YPTLVGGAAISGSAMEQGPGMPPEYPINA-RGEPVLAPPAPSAGYPVQQS-SMPVRGRRERLDSVGGVSTGIPYICSGSHGAGGGTWATPATVVVPSPSVPHSLSSGSGSGSPEGGGSIVGGVMVSXXGXXXXXXXXXXXXXXXXXXXXXXXRAGMTFAPPPPVLPSAFPLEKGGGDGFSGGADCLVLRRPSTFWAGANGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAVTSSHGRLGRVARWRGGXXXXXXXXA--ERRQGEGEGVRRSLELSPAMELL 1409 M NAIAKCGVLK+K+GMLRRKES+FYVLTN GG+F AKGFAAEF+SLK LL+L G+SEV +ER GS D G+V++I TRG K PP++ EA+S+ +T+ W QV+ DVIELVG INGD+ AQPRP G + GDEGWY+E TGRMALYTLN W V+D+REYDE TVLNWIA DR +R S G A YP+ G A+ +GS+ +QG G P+YP+N+ R P APPA A YP Q S S +R + +G P+ S H G XX XXXXXXXXXXXXXXXXXXXXXXX A P PVLPS F + KG G+ F AD LVLRRPST + ANG XXXXXXXXXXXXXXXXXXXXXX +SHGRLGRV RWRGG A ERRQ G+ RR LELSP ME+L Sbjct: 2 MYNAIAKCGVLKKKSGMLRRKESRFYVLTNTGGIFFAKGFAAEFDSLKPLLTLTGSSEVSLERGGSADSGYVMRITTRGNKPPPLELEASSEPETVAWSQVVHDVIELVGTINGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRWAVQDRREYDEPTVLNWIAGDRVSRTSSSGSNSARLGYPSQSG-ASATGSSADQGSGS-PDYPVNSXRXXPDPAPPAHPADYPSQHSHSQSMRSTSATMSHLGXXXXXXXXXXXXXX-----XXXXXXXXXGPNSSFAH-------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSADAILVGPLPVLPSVFVVGKGEGNSFGDEADSLVLRRPSTSCS-ANG---------XXXXXXXXXXXXXXXXXXXXXXXXXXXNSHGRLGRVGRWRGGGRGAGATAAAPERRQSGGDSGRRPLELSPGMEVL 445
BLAST of mRNA_L-elsbetiae_contig1012.170.1 vs. uniprot
Match: A0A6H5K968_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K968_9PHAE) HSP 1 Score: 228 bits (581), Expect = 5.330e-67 Identity = 130/238 (54.62%), Postives = 162/238 (68.07%), Query Frame = 3 Query: 66 RRKESKFYVLTNQGGLFQAKGFAAEFESLKLLLSLQGTSEVGVERSGSGDGGHVIKIHTRGQKAPPMDFEATSDSDTMLWYQVMMDVIELVGAINGDRAHAQPRPTMGGKFGDEGWYVEATGRMALYTLNVQNMWMVRDKREYDEATVLNWIASDR-ARGSGGGRGGA---YPTLVGGAAISGSAMEQGPGMPPEYPINA-RGEPVLAPPAPSAGYPVQQS-SMPVRGRRERLDSVGG 761 RR + FYVLTN GG+F AKGFAAEF+SLK LL L G+SEV +ER S D G+V++I TRG K PP++ EA + +T+ W QV+ DVIELVG +NGD+ AQPRP G + GDEGWY+E TGRMALYTLN W V+D+REYDE TVLNWIA DR +R S GG A YP+ G AA +G + +QG P+YP+N+ RG P APPA A YP Q S + +R + +GG Sbjct: 62 RRNDWPFYVLTNTGGIFFAKGFAAEFDSLKPLLMLTGSSEVSLERGVSADSGYVMRITTRGNKPPPLELEA--EPETVAWSQVVHDVIELVGTVNGDQYAAQPRPLGGLRVGDEGWYLEPTGRMALYTLNSHRRWAVQDRREYDEPTVLNWIAGDRVSRSSSGGSNSARLGYPSQSGAAAATGFSADQG-SWSPDYPVNSGRGSPDPAPPAHPADYPSQHSHTQSMRSTSATMSHLGG 296 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1012.170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1012.170.1 >prot_L-elsbetiae_contig1012.170.1 ID=prot_L-elsbetiae_contig1012.170.1|Name=mRNA_L-elsbetiae_contig1012.170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=474bp MENAIAKCGVLKRKAGMLRRKESKFYVLTNQGGLFQAKGFAAEFESLKLLback to top mRNA from alignment at L-elsbetiae_contig1012:3016..9143- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1012.170.1 ID=mRNA_L-elsbetiae_contig1012.170.1|Name=mRNA_L-elsbetiae_contig1012.170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6128bp|location=Sequence derived from alignment at L-elsbetiae_contig1012:3016..9143- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1012:3016..9143- >mRNA_L-elsbetiae_contig1012.170.1 ID=mRNA_L-elsbetiae_contig1012.170.1|Name=mRNA_L-elsbetiae_contig1012.170.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2844bp|location=Sequence derived from alignment at L-elsbetiae_contig1012:3016..9143- (Laminarionema elsbetiae ELsaHSoW15)back to top |