mRNA_L-elsbetiae_contig10114.166.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10114.166.1
Unique NamemRNA_L-elsbetiae_contig10114.166.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: D7G0D3_ECTSI (Similar to 3-phosphoadenosine 5-phosphosulfate synthase 2 isoform 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D3_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.610e-46
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESKGKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEVMKDV FNPIMQDESKGKPRYYTYGVPFFNYGLLPQTWEDP+LKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL
Sbjct:  916 AKMEVMKDVAFNPIMQDESKGKPRYYTYGVPFFNYGLLPQTWEDPFLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 996          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: F0YIA9_AURAN (Inorganic diphosphatase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIA9_AURAN)

HSP 1 Score: 125 bits (314), Expect = 1.720e-32
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEVMKD   NPIMQD +K G PRYYTYGVPFFNYGLLPQTWEDP++   EG GGDNDPLDV+EVG+ PL +G++  VKVL
Sbjct:  243 AKMEVMKDKWSNPIMQDTNKDGSPRYYTYGVPFFNYGLLPQTWEDPHMISDEGFGGDNDPLDVIEVGESPLALGSVTEVKVL 324          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: F0YJM0_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJM0_AURAN)

HSP 1 Score: 125 bits (314), Expect = 1.120e-31
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEVMKD   NPIMQD +K G PRYYTYGVPFFNYGLLPQTWEDP++   EG GGDNDPLDV+EVG+ PL +G++  VKVL
Sbjct:  859 AKMEVMKDKWSNPIMQDTNKDGSPRYYTYGVPFFNYGLLPQTWEDPHMISDEGFGGDNDPLDVIEVGESPLALGSVTEVKVL 940          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A8J2S9I4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9I4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.530e-31
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEV K+   NPIMQD +K G PRYYTYGVPFFNYGLLPQTWEDP LK  EG+GGDNDPLDV+EVGDGPL MG+   V VL
Sbjct:  908 AKMEVSKEKYRNPIMQDTNKDGSPRYYTYGVPFFNYGLLPQTWEDPALKSAEGYGGDNDPLDVIEVGDGPLPMGSTTPVVVL 989          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A7S2WF79_9STRA (Inorganic diphosphatase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WF79_9STRA)

HSP 1 Score: 117 bits (293), Expect = 6.020e-31
Identity = 57/82 (69.51%), Postives = 64/82 (78.05%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEV K+  +NPI QD +K G PRYYTYG PFFNYGL+PQTWEDP   D   H GDNDPLDVMEVG GP+ MG++V VKVL
Sbjct:   54 AKMEVSKETLYNPIKQDLNKDGSPRYYTYGTPFFNYGLIPQTWEDPANCDAMHHCGDNDPLDVMEVGSGPIAMGSVVPVKVL 135          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A7S2TPX8_9EUKA (Inorganic diphosphatase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TPX8_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.440e-30
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 KMEVMKDVPFNPIMQDESKGKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            K+EV K+   NPIMQD  K +PRYY YGVPFFNYG+LPQTWE+P  KD++GH GD DPLDVME+G   L  GT+V VKVL
Sbjct:    8 KLEVNKETEHNPIMQDVKKNQPRYYRYGVPFFNYGMLPQTWENPDKKDEDGHMGDGDPLDVMEIGSKQLETGTVVEVKVL 87          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A7S2UFC5_9STRA (Inorganic diphosphatase n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFC5_9STRA)

HSP 1 Score: 117 bits (294), Expect = 6.460e-30
Identity = 56/82 (68.29%), Postives = 66/82 (80.49%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEV K++P NPI QD++K G PRYYTYG PFFNYGL+PQTWEDP L   +G+GGDNDPLDVMEVG   L+MG+I   +VL
Sbjct:  187 AKMEVSKELPGNPIAQDKNKDGSPRYYTYGTPFFNYGLIPQTWEDPSLISPQGNGGDNDPLDVMEVGSDALLMGSITPCRVL 268          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A6U2QCL8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2QCL8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 8.680e-30
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEV K++P NPIMQD +K G PRYYTYG PFFNYGL+PQTWEDP +K  +GHGGDNDPLDV+E+G   L+MG+I + +++
Sbjct:  897 AKMEVSKEMPGNPIMQDINKDGSPRYYTYGTPFFNYGLIPQTWEDPDVKSAQGHGGDNDPLDVIELGSSQLMMGSITSCRII 978          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A7S1YEK2_9STRA (Inorganic diphosphatase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YEK2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.190e-29
Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEV K+ P N I QD +K G PRYYTYG PFFNYGL+PQTWEDP +K  EGHGGDNDPLDVME G  PL MG+I   +VL
Sbjct:  193 AKMEVSKEHPINAIKQDMNKDGSPRYYTYGTPFFNYGLIPQTWEDPAIKSAEGHGGDNDPLDVMEFGSEPLPMGSINPCRVL 274          
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Match: A0A7S3JZF6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZF6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.620e-29
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 2
Query:    2 AKMEVMKDVPFNPIMQDESK-GKPRYYTYGVPFFNYGLLPQTWEDPYLKDKEGHGGDNDPLDVMEVGDGPLVMGTIVAVKVL 244
            AKMEV KD  FNPIMQD  K G+PRYY YGVPFFNYG+LPQTWEDP +KD  G GGD+DPLD++E+GD PL MG+I ++ VL
Sbjct:  947 AKMEVAKDRWFNPIMQDTLKNGEPRYYLYGVPFFNYGMLPQTWEDPQIKDALGFGGDDDPLDLVEIGDDPLPMGSITSIVVL 1028          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10114.166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0D3_ECTSI1.610e-4697.53Similar to 3-phosphoadenosine 5-phosphosulfate syn... [more]
F0YIA9_AURAN1.720e-3273.17Inorganic diphosphatase n=1 Tax=Aureococcus anopha... [more]
F0YJM0_AURAN1.120e-3173.17Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A8J2S9I4_9STRA1.530e-3175.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2WF79_9STRA6.020e-3169.51Inorganic diphosphatase n=1 Tax=Rhizochromulina ma... [more]
A0A7S2TPX8_9EUKA1.440e-3066.25Inorganic diphosphatase n=1 Tax=Lotharella oceanic... [more]
A0A7S2UFC5_9STRA6.460e-3068.29Inorganic diphosphatase n=2 Tax=Attheya septentrio... [more]
A0A6U2QCL8_9STRA8.680e-3065.85Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1YEK2_9STRA1.190e-2969.51Inorganic diphosphatase n=1 Tax=Grammatophora ocea... [more]
A0A7S3JZF6_9STRA1.620e-2969.51Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10114contigL-elsbetiae_contig10114:5977..7001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815243.2533402-CDS-L-elsbetiae_contig10114:5977..60781622815243.2533402-CDS-L-elsbetiae_contig10114:5977..6078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10114 5978..6078 -
1691682791.8374648-CDS-L-elsbetiae_contig10114:5977..60781691682791.8374648-CDS-L-elsbetiae_contig10114:5977..6078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10114 5978..6078 -
1622815243.2658505-CDS-L-elsbetiae_contig10114:6856..70011622815243.2658505-CDS-L-elsbetiae_contig10114:6856..7001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10114 6857..7001 -
1691682791.8457046-CDS-L-elsbetiae_contig10114:6856..70011691682791.8457046-CDS-L-elsbetiae_contig10114:6856..7001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10114 6857..7001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10114.166.1prot_L-elsbetiae_contig10114.166.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10114 5978..7001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10114.166.1

>prot_L-elsbetiae_contig10114.166.1 ID=prot_L-elsbetiae_contig10114.166.1|Name=mRNA_L-elsbetiae_contig10114.166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
GQDGGDEGRAIQPHHAGREQGQAALLHLRRAVLQLRPVAADLGGPLPQGQ
GGPRWRQRPAGRDGSGRRAAGDGHHRRCQGSR
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mRNA from alignment at L-elsbetiae_contig10114:5977..7001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10114.166.1 ID=mRNA_L-elsbetiae_contig10114.166.1|Name=mRNA_L-elsbetiae_contig10114.166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1025bp|location=Sequence derived from alignment at L-elsbetiae_contig10114:5977..7001- (Laminarionema elsbetiae ELsaHSoW15)
GGCCAAGATGGAGGTGATGAAGGACGTGCCATTCAACCCCATCATGCAGG ACGAGAGCAAGGGCAAGCCGCGTTACTACACCTACGGCGTGCCGTTCTTC AACTACGGCCTGTTGCCGCAGACCTGGGAGGACCCTTACCTCAAGGTAGG GGGTTCGTAGGCTCTAGTGTGCGTAACCCCTCGCGGCGATGCCCCTGCCG TTACTTCTAAAATCAATGCCTCTTTTTTTCTCAGGGGTGCCGCAGACCTG GGAGGACCCGCACCCCACGTTGTTTAGGGTAGACTCTCGTGCGTAGCCCT TTCCGTGCGTAGTACAATCGTGTGCCTTGATGTTTGCCTCCGAATAGACC TGTTTTCCTGCCCCCCTGAGGCGACATTCACACACCGCAATTAGTATGTG CATAAATTCCTGCATAAAGTCTTGAATTGTCCGGCATGTTTCAGTTGACC GTTCGTAACTTTTGACTCAGGGGTCAAATTTAGAAAAATAAAACATTCCC ATGATCCCCATGACATGGCCAACAAGATTAGAAGTCTTTTTTTATATTTC GGTGGAAGAACAAAAATTGATACATTTTTCAAGTGAACAAAGTGAAACAA AATGAAAAAAAGTGGTGCATCCGAGATTTGAACCCAGAACCTAAATATAC CGAAAAAAAGCGTGTTTGCACTGGAACAGGAAAAGGCGAACAATTATAGG CCAGGATAGATGGGACGAAAAATAAAGATAAAACGTGTCCGTTTCGGAGC TCTCTCTCCCCCTCTCTCTCTCCCTCTCTCTCTCCCTCTTTCTCTCCCTC TTTCTCTCTCTCTCGATCCCTGGATCCCTGGATCTTGTATATGTGCGTGC GTGCGTGTGTGCGTGCGTGTTTCGTTAATTCTGAAAAACGCCAACGAACG TTACAAACGACCGCCCGCCGCAGGACAAGGAGGGCCACGGTGGCGACAAC GACCCGCTGGACGTGATGGAAGTGGGAGACGGGCCGCTGGTGATGGGCAC CATCGTCGCTGTCAAGGTTCTCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10114:5977..7001-

>mRNA_L-elsbetiae_contig10114.166.1 ID=mRNA_L-elsbetiae_contig10114.166.1|Name=mRNA_L-elsbetiae_contig10114.166.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig10114:5977..7001- (Laminarionema elsbetiae ELsaHSoW15)
GGCCAAGATGGAGGTGATGAAGGACGTGCCATTCAACCCCATCATGCAGG
ACGAGAGCAAGGGCAAGCCGCGTTACTACACCTACGGCGTGCCGTTCTTC
AACTACGGCCTGTTGCCGCAGACCTGGGAGGACCCTTACCTCAAGGGCCA
AGATGGAGGTGATGAAGGACGTGCCATTCAACCCCATCATGCAGGACGAG
AGCAAGGGCAAGCCGCGTTACTACACCTACGGCGTGCCGTTCTTCAACTA
CGGCCTGTTGCCGCAGACCTGGGAGGACCCTTACCTCAAGGACAAGGAGG
GCCACGGTGGCGACAACGACCCGCTGGACGTGATGGAAGTGGGAGACGGG
CCGCTGGTGATGGGCACCATCGTCGCTGTCAAGGTTCTCGGGACAAGGAG
GGCCACGGTGGCGACAACGACCCGCTGGACGTGATGGAAGTGGGAGACGG
GCCGCTGGTGATGGGCACCATCGTCGCTGTCAAGGTTCTCGG
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