mRNA_L-elsbetiae_contig10104.159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10104.159.1
Unique NamemRNA_L-elsbetiae_contig10104.159.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: D7FUR8_ECTSI (Nitrate high affinity transporter n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FUR8_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.460e-42
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSIAEI 273
            QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFR AGRSERAVFRIIAA V+GLSC TPLLKIRGYATCF A +GEPDSIA+I
Sbjct:  367 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRFAGRSERAVFRIIAAFVVGLSCLTPLLKIRGYATCFAAPQGEPDSIADI 457
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BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: D7FUS1_ECTSI (Nitrate/nitrite transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUS1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.510e-38
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSIAEI 273
            QM+EGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFR    SER+VFRIIAA V+ LSCTTPL+KIRGYA+CF A +GEPDSIAEI
Sbjct:  367 QMSEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRFGPTSERSVFRIIAAIVVALSCTTPLMKIRGYASCFGAPKGEPDSIAEI 457
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BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A835YTD5_9STRA (Nitrate high affinity transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.570e-18
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSI 264
            Q   G++Y IVPY+ P+ATGAVSG+ GAGGN GAV W LIFR  G +    FRI++  V+G +CT PL+ IRGY T FT A+ E  +I
Sbjct:  375 QAVNGSTYSIVPYVAPEATGAVSGMTGAGGNVGAVCWSLIFRF-GPAPNLCFRILSYIVLGAACTVPLINIRGYDTLFTKAKDEMAAI 461
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BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A835YQD5_9STRA (Nitrate high affinity transporter n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.530e-17
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGE 252
            Q   G++Y IVPY+ P+ATGAVSG+ GAGGN GAV W LIFR  G +    FRI++  ++G +CT PL+ IRGY T FT A+ E
Sbjct:  377 QAVNGSTYSIVPYVAPEATGAVSGMAGAGGNVGAVCWSLIFRF-GPAPNLCFRILSYIILGAACTAPLINIRGYDTLFTKAKDE 459
[Close]
BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A812SYP8_9DINO (NRT2.5 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SYP8_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 2.570e-15
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSI 264
            QMAEG ++GIVPY+ P ATGAVSG+VGAGGN GAV WGLIFR        V  I+   VI  +     + I+G+  C T A+GEP+S+
Sbjct:  561 QMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLIFRFGPSEADDVLFILGFIVIASAVMGLFVLIQGHDGCITKAKGEPESL 648
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BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A812ST29_9DINO (Nitrate/nitrite transporter n=2 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812ST29_9DINO)

HSP 1 Score: 89.0 bits (219), Expect = 3.740e-15
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSI 264
            QMAEG ++GIVPY+ P ATGAVSG+VGAGGN GAV WGL+FR        V  I+   VI  +     + I+G+  C T A+GEP+S+
Sbjct:  391 QMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLMFRFGPSEADDVLFILGFIVIASAVMGLFVLIQGHDGCITKAKGEPESL 478
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BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A812T2A0_9DINO (NRT2.5 protein n=3 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812T2A0_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 3.840e-15
Identity = 46/88 (52.27%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSI 264
            QMAEG ++GIVPY+ P ATGAVSG+VGAGGN GAV WGLIFR        V  I+   VI  +     + I+G+  C T A+GEP+S+
Sbjct: 1122 QMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLIFRFGPSEADDVLFILGFIVIASAVMGLFVLIQGHDGCITKAKGEPESL 1209
[Close]
BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A812SSL6_9DINO (Nitrate/nitrite transporter n=3 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812SSL6_9DINO)

HSP 1 Score: 89.0 bits (219), Expect = 4.740e-15
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSI 264
            QMAEG ++GIVPY+ P ATGAVSG+VGAGGN GAV WGL+FR        V  I+   VI  +     + I+G+  C T A+GEP+S+
Sbjct:  454 QMAEGCTFGIVPYVKPTATGAVSGVVGAGGNVGAVCWGLMFRFGPSEADDVLFILGFIVIASAVMGLFVLIQGHDGCITKAKGEPESL 541
[Close]
BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A836CM93_9STRA (Nitrate high affinity transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM93_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 6.140e-15
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSIAEI 273
            QM+EG+++GIVP + P+ATGAVSGIVGAGGN GA+ +GL+FR    +    F ++   V+G +  TPLL+++G+   FT A+ E     +I
Sbjct:  374 QMSEGSTFGIVPSVCPEATGAVSGIVGAGGNLGAIAFGLLFRFGPSAPETCFLLLGFIVLGCAALTPLLRLKGHDGMFTRAKVEEPGAIDI 464
[Close]
BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Match: A0A7S2UJ51_9STRA (Nitrate/nitrite transporter n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ51_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.050e-13
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:    1 QMAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAVFRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPD 258
            Q AEG++YGIVPY+ P ATG++SGIVGAGGN GAV +GL FR    S    F I+  C+IG S  T L+ I+GYA+ F   + +PD
Sbjct:  328 QAAEGSTYGIVPYVDPAATGSISGIVGAGGNSGAVGFGLGFRQL--SYAKAFDIMGFCIIGSSFLTGLIMIKGYASLF-CGQDDPD 410
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10104.159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUR8_ECTSI2.460e-4291.21Nitrate high affinity transporter n=4 Tax=Ectocarp... [more]
D7FUS1_ECTSI1.510e-3884.62Nitrate/nitrite transporter n=2 Tax=Ectocarpus Tax... [more]
A0A835YTD5_9STRA8.570e-1854.55Nitrate high affinity transporter n=1 Tax=Tribonem... [more]
A0A835YQD5_9STRA1.530e-1754.76Nitrate high affinity transporter n=2 Tax=Tribonem... [more]
A0A812SYP8_9DINO2.570e-1552.27NRT2.5 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812ST29_9DINO3.740e-1551.14Nitrate/nitrite transporter n=2 Tax=Symbiodinium n... [more]
A0A812T2A0_9DINO3.840e-1552.27NRT2.5 protein n=3 Tax=Symbiodinium natans TaxID=8... [more]
A0A812SSL6_9DINO4.740e-1551.14Nitrate/nitrite transporter n=3 Tax=Symbiodinium n... [more]
A0A836CM93_9STRA6.140e-1546.15Nitrate high affinity transporter n=1 Tax=Tribonem... [more]
A0A7S2UJ51_9STRA9.050e-1353.49Nitrate/nitrite transporter n=1 Tax=Attheya septen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10104contigL-elsbetiae_contig10104:2..1597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.2e-39
Seed eggNOG ortholog2880.D7FUS2
Preferred nameNRT2.2
KEGG koko:K02575
KEGG TC2.A.1.8
KEGG Pathwayko00910,map00910
KEGG ModuleM00615
Hectar predicted targeting categoryother localisation
GOsGO:0000325,GO:0001101,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007275,GO:0008150,GO:0008509,GO:0009507,GO:0009536,GO:0009628,GO:0009705,GO:0009791,GO:0009987,GO:0010035,GO:0010167,GO:0015075,GO:0015103,GO:0015112,GO:0015267,GO:0015291,GO:0015318,GO:0015513,GO:0015698,GO:0015706,GO:0015707,GO:0016020,GO:0022622,GO:0022803,GO:0022804,GO:0022832,GO:0022836,GO:0022857,GO:0031090,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071229,GO:0071241,GO:0071249,GO:0071705,GO:0071944,GO:0080167,GO:0090696,GO:0098588,GO:0098656,GO:0098805,GO:0099402,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1990351
EggNOG free text desc.cellular response to nitrate
EggNOG OGs2QPIC@2759,COG2223@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size1596
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10104.159.1prot_L-elsbetiae_contig10104.159.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10104 5..277 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.4787235-UTR-L-elsbetiae_contig10104:1..41622815242.4787235-UTR-L-elsbetiae_contig10104:1..4Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10104 2..4 +
1691682791.2453032-UTR-L-elsbetiae_contig10104:1..41691682791.2453032-UTR-L-elsbetiae_contig10104:1..4Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10104 2..4 +
1622815242.5065012-UTR-L-elsbetiae_contig10104:277..15971622815242.5065012-UTR-L-elsbetiae_contig10104:277..1597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10104 278..1597 +
1691682791.2810173-UTR-L-elsbetiae_contig10104:277..15971691682791.2810173-UTR-L-elsbetiae_contig10104:277..1597Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10104 278..1597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.4907827-CDS-L-elsbetiae_contig10104:4..2771622815242.4907827-CDS-L-elsbetiae_contig10104:4..277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10104 5..277 +
1691682791.270544-CDS-L-elsbetiae_contig10104:4..2771691682791.270544-CDS-L-elsbetiae_contig10104:4..277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10104 5..277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10104.159.1

>prot_L-elsbetiae_contig10104.159.1 ID=prot_L-elsbetiae_contig10104.159.1|Name=mRNA_L-elsbetiae_contig10104.159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MAEGTSYGIVPYIVPDATGAVSGIVGAGGNFGAVMWGLIFRLAGRSERAV
FRIIAACVIGLSCTTPLLKIRGYATCFTAARGEPDSIAEI*
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mRNA from alignment at L-elsbetiae_contig10104:2..1597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10104.159.1 ID=mRNA_L-elsbetiae_contig10104.159.1|Name=mRNA_L-elsbetiae_contig10104.159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig10104:2..1597+ (Laminarionema elsbetiae ELsaHSoW15)
CAGATGGCGGAGGGAACCTCGTACGGCATCGTGCCGTACATCGTGCCGGA
CGCGACGGGGGCCGTGTCGGGCATCGTGGGCGCCGGCGGCAACTTCGGCG
CCGTGATGTGGGGTCTCATCTTCCGCTTGGCGGGTAGGAGCGAGCGGGCT
GTGTTCCGTATCATCGCGGCGTGCGTGATCGGCCTGTCATGCACGACTCC
CCTGCTCAAGATCCGCGGGTACGCCACGTGCTTCACCGCCGCCCGGGGGG
AGCCGGACTCGATCGCAGAGATCTAAGACAGCCATATACCTCCCTCGCCC
TGATATCCCGATTTCCAACTGGGTGTTTGGATTGGTGTTGGATTGGTTGG
GGTCTTTTTCGAAAAACTATGCAGAGAAACATTGTTGATTGATTCGGGCT
TCGAGGAACTATACAGAGATACAGATTGTGTACAGAGGTGTAATGTACTA
GTAAGACAGACGGCGGCACGATCACATTGTGTTTTGACACTGCATTTTCT
TGAATGCCCATTACCGCGCGTCGACGTCGAGTGATTGAGGACATTTTGTA
GGATAGCTGGGTTCCGAATTTCCGCATACATATCGTTTTGAAGATCTGAT
TGCGATCAAATTGGCGGCACTCAGGTTGGGAGGGGGGGGTGGATCAAATC
AGGCATTGACCTGGCCGGGCCAGGAAGATGACTACAGGATTTATTTTTAG
CGTGCCATAGCGGTAGGGGGACTCCACAAATGTTGGGTCGCACAACCGCC
TATTATTGTTTTAAGTGTAGTCTTGCGCTGTATTTTTTATTTTTATCGCG
AAAGCCTTCTGCGCGCGATGTTGGTATCTGACGGCAGTGGAGCGTTTGAA
AAGACGCCACGGACACACCACCGCGCATGGTTGATGCCCCTGTTTTTATG
CGTCCAGATTCTAGCAGTTGTTGAGTCATCTCCAGCAGTATGCTTGATTT
AGGAGCGTGCGTGTTATAGTGCGTGAGAGGGCGGGGATGCGCCGGCCGCT
TTTGGGTGACATTTTGGGGTAGTTGATAATCAAGACTGCGAGGAAACATG
TTTTTGGCTGTTTTTTTCTCTTCCATATCGATAGGGGAAGACGCGAAATT
TTTGAACCGGGGTGCATGTGTTACGTGACGTCATCAACATTCAAAAACGA
CAAAATACACACATGCAGTACAGAACGCGCCACCACGTAAGAACTTGGGA
ATTACGAAGTCCTAACCGGTCGTCTGATTTTCTCTCAGAGGTCGGAAGGC
AGTTACAACCAGAAATTAATTTGAAAAGTGTTTTCACGGGGTCCCCGTAG
ATTCTTGTCCTCGGATTTCTTAAAGTTGAGTTGTTGAGTGAACAGGGTTT
GTTCGATACGACATATTAAAGGGGCAACCAAAAGCGGTGACCGCGTCTAC
CTAAGGGCTTCTTCAATTGCATTTGATTGCCGCGAGGTCGAGGGTTCAAA
TCGACGGCTCTATGTGCTGTGCGCGCGTGCGCGCTCTTGAAGCGCCGCTG
AGATAGTTGTTGGCAAAACAGGGTTGTGTGGCATGCACCGAGCTTCGTAA
CCCAACCTCAAATACAGTTTCGGAGGCTGTCCTATGACCATCAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10104:2..1597+

>mRNA_L-elsbetiae_contig10104.159.1 ID=mRNA_L-elsbetiae_contig10104.159.1|Name=mRNA_L-elsbetiae_contig10104.159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig10104:2..1597+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGGGAACCTCGTACGGCATCGTGCCGTACATCGTGCCGGACGC
GACGGGGGCCGTGTCGGGCATCGTGGGCGCCGGCGGCAACTTCGGCGCCG
TGATGTGGGGTCTCATCTTCCGCTTGGCGGGTAGGAGCGAGCGGGCTGTG
TTCCGTATCATCGCGGCGTGCGTGATCGGCCTGTCATGCACGACTCCCCT
GCTCAAGATCCGCGGGTACGCCACGTGCTTCACCGCCGCCCGGGGGGAGC
CGGACTCGATCGCAGAGATCTAAATGGCGGAGGGAACCTCGTACGGCATC
GTGCCGTACATCGTGCCGGACGCGACGGGGGCCGTGTCGGGCATCGTGGG
CGCCGGCGGCAACTTCGGCGCCGTGATGTGGGGTCTCATCTTCCGCTTGG
CGGGTAGGAGCGAGCGGGCTGTGTTCCGTATCATCGCGGCGTGCGTGATC
GGCCTGTCATGCACGACTCCCCTGCTCAAGATCCGCGGGTACGCCACGTG
CTTCACCGCCGCCCGGGGGGAGCCGGACTCGATCGCAGAGATCTAA
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