mRNA_L-elsbetiae_contig10102.158.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10102.158.1
Unique NamemRNA_L-elsbetiae_contig10102.158.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: D8LS41_ECTSI (Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS41_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 2.630e-121
Identity = 210/295 (71.19%), Postives = 225/295 (76.27%), Query Frame = 1
Query:    1 GAEVALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEP--PVQVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRC--------------------------RVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGA-------------GALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            GAEVALTREAGKNGKLA LL +AGISSVEVPCIAH+DG DLPLLPAALADPGL+YVVVTSPEAAKVFLAGW  AG P  PV VACVGKATGDALRA GV+PVFTPSKATGETLAAEIP LPP+A  ++                              RVLYPASAKAQ TLE+GL+ RGF+VRRLNTYDTVPA+W+E A+AAAA A+VAAFGSPSAVKTWAARMG   + AA V                GALAACIGETSARACREAGW ESAIFYPEKPGMEGWAKAVG AL
Sbjct:   72 GAEVALTREAGKNGKLAKLLTDAGISSVEVPCIAHQDGPDLPLLPAALADPGLAYVVVTSPEAAKVFLAGWAKAGVPGVPVPVACVGKATGDALRAGGVSPVFTPSKATGETLAAEIP-LPPSAPADDTXXXXXXXXXXXXXXXXXXXXXXXXXXXGPRVLYPASAKAQNTLESGLRARGFEVRRLNTYDTVPATWDESAEAAAAGASVAAFGSPSAVKTWAARMG---VVAAGVXXXXXXXXXXXXXXXXGALAACIGETSARACREAGWAESAIFYPEKPGMEGWAKAVGQAL 362          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A835YHW0_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHW0_9STRA)

HSP 1 Score: 257 bits (656), Expect = 2.290e-82
Identity = 150/251 (59.76%), Postives = 172/251 (68.53%), Query Frame = 1
Query:   10 VALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEPPVQVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            VALTREAG NGKL ALL   GI+ VEVPCIA  DG D   LP  LA     YV+VTSPE+AKVFL  W  A  P V VACVG ATGDALRA+G+ P FTPS+A GE LAAEIP LPP+A V      RVLYPAS +A  T++ GL+ RGF V RLNTYDT  A+W++   + AA A VAAFGSPSAVK W + MG       E     A AACIG TSA+A + AGW +  IF+PEKPGM GWA+AV +AL
Sbjct:   36 VALTREAGNNGKLEALLVAKGINCVEVPCIAFTDGPDSAQLPQHLASGAYDYVIVTSPESAKVFLQAWDAAERPNVSVACVGTATGDALRARGLEPAFTPSRAYGEDLAAEIP-LPPSAAVGEGGAPRVLYPASTRAPGTVQEGLEARGFHVVRLNTYDTGAAAWSDADLSNAARAAVAAFGSPSAVKAWVSHMG------VEA----AAAACIGVTSAKAAKAAGWADDRIFWPEKPGMPGWAQAVEEAL 275          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A7S0HHZ2_9CRYP (Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHZ2_9CRYP)

HSP 1 Score: 228 bits (581), Expect = 2.050e-70
Identity = 136/251 (54.18%), Postives = 163/251 (64.94%), Query Frame = 1
Query:   10 VALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEPPVQVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            VALTRE GKN KL  +L+E GI +VE+PCIA + G D   LP AL +    YVVVTSPEAA VFL  W +AGEP + VACVG  T  AL+  G+ PVF PSKATG+TLA E+P           R  RVLYPASAKA+  ++ GL  RGF V RLNTYDTV A+W++      A+A V A  SPSAVKTWA R+G  +            AACIGETSA AC+E G+    +F+PE PG+ GWA+AV DAL
Sbjct:   88 VALTRELGKNSKLEKVLSEKGIRTVELPCIAFEAGTDAETLPKALQEEW-EYVVVTSPEAASVFLDAWREAGEPSLPVACVGAGTKQALQEGGIEPVFMPSKATGKTLADELP--------GPRRSGRVLYPASAKARTEVQGGLTARGFSVTRLNTYDTVSATWSDKELQMGASAAVIALASPSAVKTWAERLGTKQ-----------YAACIGETSAAACKELGFEH--VFWPESPGILGWAQAVHDAL 316          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: L1JFY6_GUITC (Uroporphyrinogen-III synthase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JFY6_GUITC)

HSP 1 Score: 226 bits (575), Expect = 2.340e-70
Identity = 135/251 (53.78%), Postives = 164/251 (65.34%), Query Frame = 1
Query:   10 VALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEPPVQVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            VALTRE GKN KL   L+E G+ +VE+PCIA + G+D   LP+AL +    YVVVTSPEAA VFL  W  A +P +QVACVG  T  AL+  G+ PVF PSKATG+TLA E+P          +   RVLYPASAKA+  ++ GL  RGF V RLNTYDTV A+W+E     AA+A V A  SPSAVKTWA R+G  +            AACIGETSA AC+E G+    +F+PE PG+ GWA+AV DAL
Sbjct:   24 VALTRELGKNLKLEKALSEKGVRTVELPCIAFEAGIDSDSLPSALKE-DWEYVVVTSPEAASVFLDAWRLASQPSLQVACVGTGTKQALQEGGIEPVFMPSKATGKTLADELP--------GPQGNGRVLYPASAKARTEVQGGLTARGFTVTRLNTYDTVSATWSEQELQMAASAAVVALASPSAVKTWAERLGTKQ-----------YAACIGETSASACKELGFEH--VFWPESPGIPGWAQAVHDAL 252          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A7S2PU27_9STRA (Uroporphyrinogen-III synthase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PU27_9STRA)

HSP 1 Score: 225 bits (574), Expect = 2.200e-69
Identity = 134/265 (50.57%), Postives = 162/265 (61.13%), Query Frame = 1
Query:   10 VALTREAGKNGKL-AALLAEAGISSV------------EVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEPPV-QVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            +ALTRE GKNGKL  AL + + I  +            E+PCIAH DG D  +L   L+     YV +TSPEAAKVF   W D G P V  VA VGKAT +AL+A G+   F PSKAT  TL  E+P L      N  R   +LYPASAKAQ TL+ GL+ RGF V RLNTYDTV A+W  + ++ A + TVA F SPSAVK W       + P A       LAACIGETS  AC++ GW E  IFYPEKPG++GWA++V +AL
Sbjct:   63 IALTREEGKNGKLNKALQSNSNIKQIISSSSGSAMEVNEIPCIAHADGPDSDILGKTLSSSDFDYVAITSPEAAKVFATAWIDEGRPKVGSVAAVGKATQEALKAYGIDVAFVPSKATAATLVKELPTLEEAT--NEGRSTSLLYPASAKAQDTLQNGLEERGFIVTRLNTYDTVTATWTPEEESLAKSTTVACFASPSAVKAWVKNTAQLDCPRA-------LAACIGETSFAACKKNGWKEEDIFYPEKPGIDGWAESVANAL 318          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A7S4JXA4_9STRA (Uroporphyrinogen-III synthase n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXA4_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.840e-69
Identity = 140/261 (53.64%), Postives = 165/261 (63.22%), Query Frame = 1
Query:   10 VALTREAGKNGKLA-ALLAEAGISSV------EVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEPPV-QVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERR-CRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGG-AEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            VALTRE GKN KL  ALL+   I         E+PCI H DG D   L   L +    YV VTSPEAA+V  + W  AG P + ++A VGKATG+AL A G+   F PSKAT +TL  E   LPP+ D   E R   +LYPASAKA+ TL+ GL+ RGFDV RL+TYDTVPASW+ED    A  A VA F SPSAV  W   +GG  E  + +V      AACIGETSA+ CR+ GW E  I+YPEKPG+EGWA AV DAL
Sbjct:   62 VALTREDGKNSKLLRALLSHPRIGDAIPVDIEEIPCIEHADGDDYDRLGPTLKERSFDYVAVTSPEAARVLASAWEGAGRPSMGKIAAVGKATGEALIALGIEVDFVPSKATAKTLVEE---LPPSDDATAEGRPTTLLYPASAKARPTLQNGLEGRGFDVTRLDTYDTVPASWSEDRTDLAREAGVACFASPSAVNAWVENLGGEGEGCSGDV-----AAACIGETSAQGCRDMGWDEGDIYYPEKPGVEGWANAVADAL 314          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: B8BVT8_THAPS (Uroporphyrinogen-III synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVT8_THAPS)

HSP 1 Score: 219 bits (559), Expect = 4.490e-67
Identity = 135/264 (51.14%), Postives = 159/264 (60.23%), Query Frame = 1
Query:   10 VALTREAGKNGKLA-ALLAEAGISSV-----------EVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEPPV-QVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            VALTRE GKN KL  ALL+   I  +           E+PCI H DG D   L   LA     YV +TSPEAAKV +  W +AG P + +VA VGKAT ++L+  G+   F PSKAT  TL  E+P+    A     R   + YPAS KA  TL+ GL+ RGFDV RLNTYDTVPASW+E+    A +A VA F SPSAVK W     G   PA       A AACIGETSA ACR+  W ES IFYPEKPG++GWA +V DAL
Sbjct:   67 VALTREEGKNDKLRKALLSNEHIQQLSQSSGVAVDIHEIPCIEHADGPDTDKLVPTLASTQFDYVAITSPEAAKVLVNAWIEAGRPQLGKVAAVGKATQESLKEFGIEVAFVPSKATAATLVKELPLS--DAATKEGRSSTLFYPASNKAADTLQNGLEERGFDVMRLNTYDTVPASWDEEQTLLAQSANVACFASPSAVKAWLKNTDGMNKPAR------AKAACIGETSAEACRKNQWDESDIFYPEKPGVDGWAVSVADAL 322          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A1Z5JNA0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JNA0_FISSO)

HSP 1 Score: 208 bits (529), Expect = 5.440e-63
Identity = 126/252 (50.00%), Postives = 147/252 (58.33%), Query Frame = 1
Query:   13 ALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGW---TDAGEPPVQVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDA 759
            A TRE GKN +L   +    ++ VE+PCIAH DG D   L   L      YV +TSPEAA+V  + W   T    PP  V  VGKAT DAL+A G+T  F PSKAT E L  E+P+        + ++ RVLYPAS +AQ TL+ GL  RGF V RLNTYDTV A WNE     AA   +A F SPSAVK W                   LAACIGETSA+ACRE GW E  IFYP+KPGMEGW  AV +A
Sbjct:   50 AATREQGKNEQLMKGIRAIHLNPVELPCIAHADGPDFSSLQETLETNPWDYVTITSPEAARVLSSAWQHCTWQTTPPPAVVAVGKATEDALQASGITVTFCPSKATAEVLVQELPL-------PSSQQPRVLYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAQWNEHETNMAAQVQIACFASPSAVKGWLLNTENNHQ---------VLAACIGETSAKACRERGWNEEHIFYPDKPGMEGWVDAVAEA 285          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A7S2EAC0_TRICV (Uroporphyrinogen-III synthase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EAC0_TRICV)

HSP 1 Score: 209 bits (533), Expect = 1.490e-62
Identity = 136/266 (51.13%), Postives = 162/266 (60.90%), Query Frame = 1
Query:    4 AEVALTREAGKNGKLA-ALLAEAGISSV------EVPCIAHKDGVDLPLLPAALADPG----LSYVVVTSPEAAKVFLAGWTDAGEPPV-QVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCR-VLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDAL 762
            A VALTRE GKN KL  ALL+   I         E+PCIAH DG D  +L  AL+  G      YV VTSPEAA+V  A W  AG P + +V  VGKAT +AL  +G+   F PSKAT +TL  E   LP + D   E R   +LYPASAKA+KTLE GL+ RGF V RL+TYDT+PA+W  + K  A    VA F SPSA+  W   +   E       G    AACIGETSA+ CR+ GW E  IFYPEKPG++GWA+AV DAL
Sbjct:  113 AVVALTREDGKNAKLLRALLSHPRIGDAIPVDLEEIPCIAHADGPDSDMLGPALSGKGGFGAFDYVAVTSPEAARVLAAAWEAAGRPDLGEVVAVGKATEEALLREGIRVGFVPSKATAKTLVEE---LPESGDATMEGRLTTLLYPASAKAKKTLEQGLEERGFVVTRLDTYDTIPATWTPEKKNKADLVRVACFASPSAITGWLQNLEDTEGGRR---GNTIAAACIGETSAQMCRDMGWDEGNIFYPEKPGVDGWAEAVADAL 372          
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Match: A0A1Z5JYL0_FISSO (Uroporphyrinogen-III synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYL0_FISSO)

HSP 1 Score: 207 bits (526), Expect = 1.540e-62
Identity = 126/250 (50.40%), Postives = 148/250 (59.20%), Query Frame = 1
Query:   13 ALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALADPGLSYVVVTSPEAAKVFLAGWTDAGEP-PVQVACVGKATGDALRAKGVTPVFTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQVRGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGAEMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAVGDA 759
            A TRE GKN +L   +    +  VE+PCIAH DG D   L   L +    YV +TSPEAA+V  + W     P P  V  VGKAT DAL+A G+   F PSKAT E L  E+P+         +++ +VLYPAS +AQ TL+ GL  RGF V RLNTYDTV A WNE     AA   +A F SPSAVK W        +   E   A  LAACIGETSA+ACRE GW E  IFYPEKPGMEGW  AV +A
Sbjct:   50 AATREQGKNEQLMKGIRGIHLHPVELPCIAHADGPDFSSLQETLQNNHWDYVTITSPEAARVLSSAWQHCTWPTPPAVVAVGKATEDALQAAGIAVAFCPSKATAEVLVQELPL-----PSQQQQQPKVLYPASVRAQTTLQDGLTQRGFTVVRLNTYDTVTAHWNEHETVQAAQVQIACFASPSAVKGW--------LLNTENNNA-VLAACIGETSAKACRERGWDEEHIFYPEKPGMEGWVNAVAEA 285          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10102.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS41_ECTSI2.630e-12171.19Uroporphyrinogen-III synthase n=2 Tax=Ectocarpus T... [more]
A0A835YHW0_9STRA2.290e-8259.76Uroporphyrinogen-III synthase n=1 Tax=Tribonema mi... [more]
A0A7S0HHZ2_9CRYP2.050e-7054.18Uroporphyrinogen-III synthase n=1 Tax=Hanusia phi ... [more]
L1JFY6_GUITC2.340e-7053.78Uroporphyrinogen-III synthase n=2 Tax=Guillardia t... [more]
A0A7S2PU27_9STRA2.200e-6950.57Uroporphyrinogen-III synthase n=1 Tax=Skeletonema ... [more]
A0A7S4JXA4_9STRA2.840e-6953.64Uroporphyrinogen-III synthase n=3 Tax=Odontella au... [more]
B8BVT8_THAPS4.490e-6751.14Uroporphyrinogen-III synthase n=1 Tax=Thalassiosir... [more]
A0A1Z5JNA0_FISSO5.440e-6350.00Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]
A0A7S2EAC0_TRICV1.490e-6251.13Uroporphyrinogen-III synthase n=1 Tax=Trieres chin... [more]
A0A1Z5JYL0_FISSO1.540e-6250.40Uroporphyrinogen-III synthase n=1 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10102contigL-elsbetiae_contig10102:5747..6831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.9
Seed ortholog evalue4.8e-97
Seed eggNOG ortholog2880.D8LS41
Preferred nameHEMD
KEGG rclassRC01861
KEGG koko:K01719
KEGG ReactionR03165
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004852,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006725,GO:0006778,GO:0006779,GO:0006780,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0033013,GO:0033014,GO:0034641,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046502,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.uroporphyrinogen III biosynthetic process
EggNOG OGs2QST9@2759,COG1587@1
EC4.2.1.75
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionuroporphyrinogen synthase, putative chloroplast precursor
Ec32 orthologEc-12_004890.1
Exons4
Model size763
Cds size762
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10102.158.1prot_L-elsbetiae_contig10102.158.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10102 5747..6831 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.3952982-CDS-L-elsbetiae_contig10102:5746..59141622815242.3952982-CDS-L-elsbetiae_contig10102:5746..5914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 5747..5914 -
1691682791.1940513-CDS-L-elsbetiae_contig10102:5746..59141691682791.1940513-CDS-L-elsbetiae_contig10102:5746..5914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 5747..5914 -
1622815242.4132607-CDS-L-elsbetiae_contig10102:5992..62071622815242.4132607-CDS-L-elsbetiae_contig10102:5992..6207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 5993..6207 -
1691682791.2096982-CDS-L-elsbetiae_contig10102:5992..62071691682791.2096982-CDS-L-elsbetiae_contig10102:5992..6207Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 5993..6207 -
1622815242.4250076-CDS-L-elsbetiae_contig10102:6285..65771622815242.4250076-CDS-L-elsbetiae_contig10102:6285..6577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 6286..6577 -
1691682791.2246654-CDS-L-elsbetiae_contig10102:6285..65771691682791.2246654-CDS-L-elsbetiae_contig10102:6285..6577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 6286..6577 -
1622815242.4385593-CDS-L-elsbetiae_contig10102:6744..68311622815242.4385593-CDS-L-elsbetiae_contig10102:6744..6831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 6745..6831 -
1691682791.2354069-CDS-L-elsbetiae_contig10102:6744..68311691682791.2354069-CDS-L-elsbetiae_contig10102:6744..6831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10102 6745..6831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10102.158.1

>prot_L-elsbetiae_contig10102.158.1 ID=prot_L-elsbetiae_contig10102.158.1|Name=mRNA_L-elsbetiae_contig10102.158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=254bp
GAEVALTREAGKNGKLAALLAEAGISSVEVPCIAHKDGVDLPLLPAALAD
PGLSYVVVTSPEAAKVFLAGWTDAGEPPVQVACVGKATGDALRAKGVTPV
FTPSKATGETLAAEIPILPPTADVNNERRCRVLYPASAKAQKTLETGLQV
RGFDVRRLNTYDTVPASWNEDAKAAAAAATVAAFGSPSAVKTWAARMGGA
EMPAAEVGGAGALAACIGETSARACREAGWPESAIFYPEKPGMEGWAKAV
GDAL
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mRNA from alignment at L-elsbetiae_contig10102:5747..6831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10102.158.1 ID=mRNA_L-elsbetiae_contig10102.158.1|Name=mRNA_L-elsbetiae_contig10102.158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1085bp|location=Sequence derived from alignment at L-elsbetiae_contig10102:5747..6831- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCCGAGGTGGCTCTGACCAGAGAAGCCGGAAAAAACGGAAAGCTGGC TGCACTCCTGGCAGAGGCCGGCATTTCCAGCGTTGAGGTGAGGTGGGAGA TGGGGGGGGCACAAGAGGGTGAAGGGAACGATCGTAAACGAACCGCAGCT CACTACAAACAACAGCGAATACTTTTGATCGACTCTCCGTCGGCGACATT GCGCCTCTAAACTATCGGTTTCTCCCTTACATTCGATCTGATGTTAACGC AAAGGTCCCTTGCATCGCGCACAAGGACGGGGTAGACCTGCCTCTCTTGC CGGCCGCGCTGGCCGACCCAGGCCTATCGTACGTCGTCGTCACCTCCCCG GAGGCGGCCAAGGTGTTCTTAGCCGGCTGGACAGATGCCGGAGAACCGCC CGTGCAAGTGGCCTGCGTCGGCAAGGCCACGGGGGACGCGCTCCGCGCCA AGGGCGTCACGCCCGTGTTCACCCCGTCCAAAGCGACGGGCGAGACCCTG GCAGCGGAAATCCCTATTCTTCCTCCGACCGCCGACGTGAACAACGGTGG CGGTGGCGGCAGCGGGGGCGATGGGACGGCGGCTTCAGCGGGGGAGGCAA GGGAGGACGTCGGCCCCCCGCTAGAAAGACGCTGTCGCGTTCTCTACCCG GCCTCCGCGAAGGCGCAGAAGACGCTGGAGACAGGCTTGCAGGTCAGAGG CTTCGATGTGCGCCGGTTGAACACGTACGATACGGTGCCGGCGAGCTGGA ACGAGGACGCCAAAGCGGCGGCAGCGGCGGCGACGGTGGCGGCTTTCGGG AGCCCGAGCGCCGTCAAGACATGGGCAGCGCGGATGGGGGTTGTGGCTGA AGTAGAAGACGGCGGGGGCGCGGACGGGGGTGGTAGGACTGGGATGGAAG AAGAGGGCGAGCGAGAGGGCGCAGAAATGCCGGCCGCCGAGGTAGGCGGT GCTGGAGCGCTAGCCGCTTGCATAGGAGAGACGAGCGCACGGGCTTGCCG AGAGGCCGGGTGGCCGGAGTCAGCGATTTTTTACCCTGAGAAACCCGGGA TGGAGGGGTGGGCAAAGGCCGTCGGTGATGCCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10102:5747..6831-

>mRNA_L-elsbetiae_contig10102.158.1 ID=mRNA_L-elsbetiae_contig10102.158.1|Name=mRNA_L-elsbetiae_contig10102.158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1524bp|location=Sequence derived from alignment at L-elsbetiae_contig10102:5747..6831- (Laminarionema elsbetiae ELsaHSoW15)
GGAGCCGAGGTGGCTCTGACCAGAGAAGCCGGAAAAAACGGAAAGCTGGC
TGCACTCCTGGCAGAGGCCGGCATTTCCAGCGTTGAGGGAGCCGAGGTGG
CTCTGACCAGAGAAGCCGGAAAAAACGGAAAGCTGGCTGCACTCCTGGCA
GAGGCCGGCATTTCCAGCGTTGAGGTCCCTTGCATCGCGCACAAGGACGG
GGTAGACCTGCCTCTCTTGCCGGCCGCGCTGGCCGACCCAGGCCTATCGT
ACGTCGTCGTCACCTCCCCGGAGGCGGCCAAGGTGTTCTTAGCCGGCTGG
ACAGATGCCGGAGAACCGCCCGTGCAAGTGGCCTGCGTCGGCAAGGCCAC
GGGGGACGCGCTCCGCGCCAAGGGCGTCACGCCCGTGTTCACCCCGTCCA
AAGCGACGGGCGAGACCCTGGCAGCGGAAATCCCTATTCTTCCTCCGACC
GCCGACGTGAACAACGGTCCCTTGCATCGCGCACAAGGACGGGGTAGACC
TGCCTCTCTTGCCGGCCGCGCTGGCCGACCCAGGCCTATCGTACGTCGTC
GTCACCTCCCCGGAGGCGGCCAAGGTGTTCTTAGCCGGCTGGACAGATGC
CGGAGAACCGCCCGTGCAAGTGGCCTGCGTCGGCAAGGCCACGGGGGACG
CGCTCCGCGCCAAGGGCGTCACGCCCGTGTTCACCCCGTCCAAAGCGACG
GGCGAGACCCTGGCAGCGGAAATCCCTATTCTTCCTCCGACCGCCGACGT
GAACAACGAAAGACGCTGTCGCGTTCTCTACCCGGCCTCCGCGAAGGCGC
AGAAGACGCTGGAGACAGGCTTGCAGGTCAGAGGCTTCGATGTGCGCCGG
TTGAACACGTACGATACGGTGCCGGCGAGCTGGAACGAGGACGCCAAAGC
GGCGGCAGCGGCGGCGACGGTGGCGGCTTTCGGGAGCCCGAGCGCCGTCA
AGACATGGGCAGCGCGGATGGGGAAAGACGCTGTCGCGTTCTCTACCCGG
CCTCCGCGAAGGCGCAGAAGACGCTGGAGACAGGCTTGCAGGTCAGAGGC
TTCGATGTGCGCCGGTTGAACACGTACGATACGGTGCCGGCGAGCTGGAA
CGAGGACGCCAAAGCGGCGGCAGCGGCGGCGACGGTGGCGGCTTTCGGGA
GCCCGAGCGCCGTCAAGACATGGGCAGCGCGGATGGGGGGCGCAGAAATG
CCGGCCGCCGAGGTAGGCGGTGCTGGAGCGCTAGCCGCTTGCATAGGAGA
GACGAGCGCACGGGCTTGCCGAGAGGCCGGGTGGCCGGAGTCAGCGATTT
TTTACCCTGAGAAACCCGGGATGGAGGGGTGGGCAAAGGCCGTCGGTGAT
GCCTTGGGCGCAGAAATGCCGGCCGCCGAGGTAGGCGGTGCTGGAGCGCT
AGCCGCTTGCATAGGAGAGACGAGCGCACGGGCTTGCCGAGAGGCCGGGT
GGCCGGAGTCAGCGATTTTTTACCCTGAGAAACCCGGGATGGAGGGGTGG
GCAAAGGCCGTCGGTGATGCCTTG
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