mRNA_L-elsbetiae_contig1010.154.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1010.154.1
Unique NamemRNA_L-elsbetiae_contig1010.154.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1010.154.1 vs. uniprot
Match: D7FP77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP77_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 4.170e-107
Identity = 202/371 (54.45%), Postives = 230/371 (61.99%), Query Frame = 1 
Query:    1 MAG-TQVSPRVSLTSSIESSHAFSVSRVLSNGNGGVVSSVIWLTISAGLCFPWLLEQPSATKAGETPKSVAWFLVLALDLLIGTMSVFSLWFQRSTLSIMLLVWGTGGILATFVMGSFAMLPAVATICCCAEEFCVMGAADTTPLDDSYCLAPVDLCMETKWALWCYFGGILLAMISIVLLVNSVALHHKTLLDCERQRNEAAKAIRAANRSRRRRQELWEQEIYGGSYTGSNGGGMRATHGRRDGPDGSTTA------MPHRADRSTPRHA----TVAPSFGSPAHSHRPPPQAPATRLELG--RVTPPGPFASFGLRGDTDVDIEMSRLGSPTSAPMSLAGGD------------------FAIGAYTG 1020
            MAG  + S R S TSS  SS  FS SRVLSNG  GVVSSVIW+ ISAGLCFPWLLEQPSA+KAG++PKSVAWF+VLA+DLLIG MSVFSLWF+RSTLSIMLL+WG GGI+ TF+MGSFAMLPAVATICCCAEE CV+GAAD +PLDDS+C   ++LCMETKW+LWCY+GGILLAM SIVLLVNSVALHHKTLLDCER                                                              + + A+ S+ R       +APSF SP   +   P+ P    E+G  RVTPP  FA+    G TD  IEMSRLGSPTSA MS +G D                  F IGAYTG
Sbjct:    1 MAGPAEASSRASPTSSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDLLIGAMSVFSLWFRRSTLSIMLLIWGAGGIVVTFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFCHTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKTLLDCERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLNPAETSSSRGRGGAPAIAPSFESPTRGY---PRKPVATAEVGGGRVTPPVEFAALDPTGGTD--IEMSRLGSPTSAAMSQSGQDEGDGNFGGEXXXXXXXXXFTIGAYTG 366
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BLAST of mRNA_L-elsbetiae_contig1010.154.1 vs. uniprot
Match: A0A6H5JN85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN85_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 7.110e-96
Identity = 215/485 (44.33%), Postives = 247/485 (50.93%), Query Frame = 1 
Query:    1 MAG-TQVSPRVSLTSSIESSHAFSVSRVLSNGNGGVVSSVIWLTISAGLCFPWLLEQPSATKAGETPKSVAWFLVLALDLLIGTMSVFSLWFQRSTLSIMLLVWGTGGILATFVMGSFAMLPAVATI----------------------CCCAEEFCVMGAADTTPLDDSYCLAPVDLCMETKWALWCYFGGILLAMISIVLLVNSVALHHK---------------------------------------------------------------------------------------------TLLDCERQRNEAAKAIRAANRSRRRRQELWEQEIYGGSYTGSNGGGMRATHGRRDGPDGST------TAMPHRADRSTPRHA----TVAPSFGSPAHSHRPPPQAPATRLEL--GRVTPPGPFASFGLRGDTDVDIEMSRLGSPTSAPMSLAGGD-----------------FAIGAYTG 1020
            MAG  + S R S TSS  SS  FS SRVLSNG  GVVSSVIW+ ISAGLCFPWLLEQP A+KAG++PKSVAWF+VLA+DL IG MSVFSLWF+RSTLSIMLL+WG GGI+ATF++GSFAMLPAVAT+                      CCCAEE CV+GAAD +PLDDS+C   ++LCMETKW+LWCY+GGILLAM SIVLLVNSVALHHK                                                                                             TLLDCER+ NEAAKAIRAANRSRR                                           T + + A+ ++ R       VAPSF SPA  +   P+ P    E+   RVTPP  FA+     DTD  IEMSRLGSPTSA MS +G D                 F+IGAYTG
Sbjct:    1 MAGPAEASSRASSTSSFNSSQEFSASRVLSNGACGVVSSVIWIIISAGLCFPWLLEQPPASKAGDSPKSVAWFVVLAIDLSIGAMSVFSLWFRRSTLSIMLLIWGAGGIVATFLVGSFAMLPAVATMSTSSFTMSTSCATANPVDLGGRCCCAEELCVLGAADISPLDDSFCYTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHHKVLGRKEIVHLVQTQHDLLSKTQKNVPQQIIMRSSLTDVVGSGVVENLVGMEEVEEVDVADTVKTKQGRVRSEPHKARTHRTQDTLQSNRPIEETLLDCERRWNEAAKAIRAANRSRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLLLNPAETASSRGRGGAPAVAPSFESPARGY---PRKPVATAEVCGDRVTPPVEFAALYPARDTD--IEMSRLGSPTSAAMSQSGQDEGDGNFGXXXXXXXXXXFSIGAYTG 480
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1010.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP77_ECTSI4.170e-10754.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN85_9PHAE7.110e-9644.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1010contigL-elsbetiae_contig1010:11509..14342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_000540.1
Exons3
Model size1020
Cds size1020
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1010.154.1prot_L-elsbetiae_contig1010.154.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1010 11509..14342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815242.0714269-CDS-L-elsbetiae_contig1010:11508..118851622815242.0714269-CDS-L-elsbetiae_contig1010:11508..11885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 11509..11885 +
1691682791.0144098-CDS-L-elsbetiae_contig1010:11508..118851691682791.0144098-CDS-L-elsbetiae_contig1010:11508..11885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 11509..11885 +
1622815242.0838344-CDS-L-elsbetiae_contig1010:12720..129101622815242.0838344-CDS-L-elsbetiae_contig1010:12720..12910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 12721..12910 +
1691682791.0249205-CDS-L-elsbetiae_contig1010:12720..129101691682791.0249205-CDS-L-elsbetiae_contig1010:12720..12910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 12721..12910 +
1622815242.0941908-CDS-L-elsbetiae_contig1010:13889..143421622815242.0941908-CDS-L-elsbetiae_contig1010:13889..14342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 13890..14342 +
1691682791.034344-CDS-L-elsbetiae_contig1010:13889..143421691682791.034344-CDS-L-elsbetiae_contig1010:13889..14342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1010 13890..14342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1010.154.1

>prot_L-elsbetiae_contig1010.154.1 ID=prot_L-elsbetiae_contig1010.154.1|Name=mRNA_L-elsbetiae_contig1010.154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=340bp
MAGTQVSPRVSLTSSIESSHAFSVSRVLSNGNGGVVSSVIWLTISAGLCF
PWLLEQPSATKAGETPKSVAWFLVLALDLLIGTMSVFSLWFQRSTLSIML
LVWGTGGILATFVMGSFAMLPAVATICCCAEEFCVMGAADTTPLDDSYCL
APVDLCMETKWALWCYFGGILLAMISIVLLVNSVALHHKTLLDCERQRNE
AAKAIRAANRSRRRRQELWEQEIYGGSYTGSNGGGMRATHGRRDGPDGST
TAMPHRADRSTPRHATVAPSFGSPAHSHRPPPQAPATRLELGRVTPPGPF
ASFGLRGDTDVDIEMSRLGSPTSAPMSLAGGDFAIGAYTG
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mRNA from alignment at L-elsbetiae_contig1010:11509..14342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1010.154.1 ID=mRNA_L-elsbetiae_contig1010.154.1|Name=mRNA_L-elsbetiae_contig1010.154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2834bp|location=Sequence derived from alignment at L-elsbetiae_contig1010:11509..14342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGCACGCAGGTGTCACCGAGAGTGAGCCTCACAAGCAGCATCGA
GTCTAGCCACGCGTTCTCGGTATCAAGAGTGCTCTCAAACGGAAATGGTG
GAGTCGTGTCCTCGGTGATATGGCTCACCATCTCAGCCGGGTTATGTTTC
CCGTGGTTGTTGGAGCAACCTTCGGCGACCAAGGCTGGGGAGACACCCAA
GTCAGTCGCGTGGTTCCTCGTGCTAGCACTCGATCTCTTGATCGGGACAA
TGAGCGTGTTTTCGCTGTGGTTCCAGCGCAGCACTTTAAGCATCATGCTG
CTCGTCTGGGGTACCGGTGGCATCCTGGCTACATTCGTGATGGGAAGCTT
CGCGATGCTGCCTGCTGTGGCCACTATGTAAGCTGCATTTATTCGATCCC
AACGCCGCACTGTTCATGTTTGATCACACAGGGCTTCTTGACTACTTACA
TAAATCAACACGGAGTCCCGTCTCAATGTGGGTTAAGGTTTTATTTTTGA
TCAACTGTTTCGCTTTCACAACAGCTATAACATAGATTCTGATACACATA
TTGTAGCGTATAGATAGAGCGATCCGTGTGTTTTTCGTTTCCACCAGAGG
CGGTACAGAGTACCTATATGTAGACTATCTAGTCTATAGATATGTACGTA
CGTGCAACCCCGAACCAACAGCAAACATGTATCTAGCTACGTTTGGGGCA
CGTACTAAGTCTGGATGCATGCAACATACGGCGAGCACCTTGATGTGTTT
AAACGAGCAGTGTCGCACTGACAAGATTGTTCGACCACACATTTATACTC
GAAATCAAGTGCTACGGAGAATCACGTCGAGACGTGCCAGATACAGCAGT
ACTGTCGAAAAGACAGGCCGTGTAGCAGGAGTGAGATCGTTTCCATTCAC
CAAGTATTCATAGGCACTAAATATTGGTCCAAGGTGGCTGGCTTTAAAAC
GTGATTTTCAAGCATCAACCACAACTACTGTTCACATTTTCATTCCTCGA
GCACAGCTATCTATGAATTGCGAGACCTACTACAGTACCACCCTTGATCG
CTGTATCTCCATGGTACGTAGACCCCACAATGAGTGGGGAAGTGAGAGAC
ACACATAAATGATAGCATCATTCACATACACCATCCTGAGCACCTTACCC
ACTCTGCGTTGCTCCTACCCACGAACCATGCTCGACTGCCGACCATTTGA
TTCGCTCCGCAGATGCTGCTGCGCAGAGGAATTTTGTGTCATGGGTGCTG
CCGACACCACGCCCCTGGACGATAGTTATTGCCTAGCCCCGGTTGACCTC
TGCATGGAGACTAAGTGGGCGCTGTGGTGCTATTTTGGGGGGATCCTTCT
GGCCATGATATCTATCGTCTTGCTCGTCAATTCGGTCGCCTTACATCACA
AGGTATGCACACAAAAAATCACCTGCGACTGATACTATACTCACAGCAAA
CCGTAGATATTTCAGTTTGTAAACTCTCGAACAATAAGCATGATACTTTT
TCGAGTATACAACTGCACTTCCACGTTTGAAGTACTCGCCGTAATTGCAT
GTTCCCGCCTTTTTGGAAATCCAAAAAATGTTCCTCAGGGTGTCCCCCGA
TCGTTGTATTATGTCATACCAGCCTAGGCTAGCGATGCTACTCTATTCCC
TACCCAGAAACCAGGTAGATTATCATATGTCACGTTGTCGACACAACCCC
CCGGGACTCGGCACGCTACCTTGCTCTGCTGGCAGAGATGATGCAGAGAC
AGATACAGTATGATAATATTGAATGTGTTTCGGTGTCAAGTTTTCCTACA
GCAGAACTTTAATTTGACGAGGTGTGTGTCAAAGCAGCGCAAACTGTAAT
GCGATATGATTGTTCGCTGCAAACTGAAATATTATTTGTATCCAGCGCGG
ACGTTAGCATCACAGCGCGGAGTCTACCTACAAAGTTCGGAGGTTCGGGA
CTTGTACACGAAAATACCATACACATGATTAGCGTTACTCGTCCTTTGTG
GGCGTCTCGGGAGCCATCATCGCTACTCGCCTTCAATCCAGCAGTAACTC
GGGAAGGTCTTCGTCGCCCCTTCAAACTCATCAGTAAGCACATCAATATC
AGTCAACACGCATCCCACATACCCACACCCACACCCTGCAGAGTTAATGT
CGAGTCTTCCTCCCTATCTCCCCCCTCTATATGACCGAATAGGCGTTGAC
AACCGATGCCTCCCCCCCCCACCTCTCGACAATATCGCACATCTCGATAT
ATTCAAAGCATCCTGAAGTACTGCCCTGCTTTTCCGAACAGGCTGATCCT
AACGATATGCATCATTTGTTTTTGACCACACGAATCGAATCAAAAATCGA
AACGAATCGAAAACGAAACAAATCGAAACAGACCCTCCTGGACTGTGAGC
GCCAACGCAACGAGGCCGCAAAGGCGATCCGCGCGGCCAACCGCTCGAGA
CGCCGCCGCCAGGAGCTCTGGGAGCAAGAAATTTACGGCGGCAGCTACAC
GGGTAGCAACGGCGGCGGGATGCGGGCGACCCACGGCCGGAGGGATGGCC
CCGACGGAAGCACCACCGCGATGCCGCACCGCGCCGATAGGTCAACCCCC
CGCCACGCCACCGTTGCACCGTCGTTCGGGTCCCCGGCACACTCTCACAG
GCCCCCCCCGCAGGCCCCCGCGACAAGGCTCGAGCTTGGCAGGGTAACTC
CGCCCGGACCGTTTGCCTCGTTCGGTCTGAGGGGGGACACCGACGTCGAT
ATCGAGATGAGCAGGCTCGGGTCCCCGACGTCCGCCCCGATGTCCCTAGC
CGGCGGGGATTTCGCGATCGGCGCCTACACGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1010:11509..14342+

>mRNA_L-elsbetiae_contig1010.154.1 ID=mRNA_L-elsbetiae_contig1010.154.1|Name=mRNA_L-elsbetiae_contig1010.154.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2040bp|location=Sequence derived from alignment at L-elsbetiae_contig1010:11509..14342+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGGCACGCAGGTGTCACCGAGAGTGAGCCTCACAAGCAGCATCGA
GTCTAGCCACGCGTTCTCGGTATCAAGAGTGCTCTCAAACGGAAATGGTG
GAGTCGTGTCCTCGGTGATATGGCTCACCATCTCAGCCGGGTTATGTTTC
CCGTGGTTGTTGGAGCAACCTTCGGCGACCAAGGCTGGGGAGACACCCAA
GTCAGTCGCGTGGTTCCTCGTGCTAGCACTCGATCTCTTGATCGGGACAA
TGAGCGTGTTTTCGCTGTGGTTCCAGCGCAGCACTTTAAGCATCATGCTG
CTCGTCTGGGGTACCGGTGGCATCCTGGCTACATTCGTGATGGGAAGCTT
CGCGATGCTGCCTGCTGTGGCCACTATATGGCTGGCACGCAGGTGTCACC
GAGAGTGAGCCTCACAAGCAGCATCGAGTCTAGCCACGCGTTCTCGGTAT
CAAGAGTGCTCTCAAACGGAAATGGTGGAGTCGTGTCCTCGGTGATATGG
CTCACCATCTCAGCCGGGTTATGTTTCCCGTGGTTGTTGGAGCAACCTTC
GGCGACCAAGGCTGGGGAGACACCCAAGTCAGTCGCGTGGTTCCTCGTGC
TAGCACTCGATCTCTTGATCGGGACAATGAGCGTGTTTTCGCTGTGGTTC
CAGCGCAGCACTTTAAGCATCATGCTGCTCGTCTGGGGTACCGGTGGCAT
CCTGGCTACATTCGTGATGGGAAGCTTCGCGATGCTGCCTGCTGTGGCCA
CTATATGCTGCTGCGCAGAGGAATTTTGTGTCATGGGTGCTGCCGACACC
ACGCCCCTGGACGATAGTTATTGCCTAGCCCCGGTTGACCTCTGCATGGA
GACTAAGTGGGCGCTGTGGTGCTATTTTGGGGGGATCCTTCTGGCCATGA
TATCTATCGTCTTGCTCGTCAATTCGGTCGCCTTACATCACAAGATGCTG
CTGCGCAGAGGAATTTTGTGTCATGGGTGCTGCCGACACCACGCCCCTGG
ACGATAGTTATTGCCTAGCCCCGGTTGACCTCTGCATGGAGACTAAGTGG
GCGCTGTGGTGCTATTTTGGGGGGATCCTTCTGGCCATGATATCTATCGT
CTTGCTCGTCAATTCGGTCGCCTTACATCACAAGACCCTCCTGGACTGTG
AGCGCCAACGCAACGAGGCCGCAAAGGCGATCCGCGCGGCCAACCGCTCG
AGACGCCGCCGCCAGGAGCTCTGGGAGCAAGAAATTTACGGCGGCAGCTA
CACGGGTAGCAACGGCGGCGGGATGCGGGCGACCCACGGCCGGAGGGATG
GCCCCGACGGAAGCACCACCGCGATGCCGCACCGCGCCGATAGGTCAACC
CCCCGCCACGCCACCGTTGCACCGTCGTTCGGGTCCCCGGCACACTCTCA
CAGGCCCCCCCCGCAGGCCCCCGCGACAAGGCTCGAGCTTGGCAGGGTAA
CTCCGCCCGGACCGTTTGCCTCGTTCGGTCTGAGGGGGGACACCGACGTC
GATATCGAGATGAGCAGGCTCGGGTCCCCGACGTCCGCCCCGATGTCCCT
AGCCGGCGGGGATTTCGCGATCGGCGCCTACACGGGAACCCTCCTGGACT
GTGAGCGCCAACGCAACGAGGCCGCAAAGGCGATCCGCGCGGCCAACCGC
TCGAGACGCCGCCGCCAGGAGCTCTGGGAGCAAGAAATTTACGGCGGCAG
CTACACGGGTAGCAACGGCGGCGGGATGCGGGCGACCCACGGCCGGAGGG
ATGGCCCCGACGGAAGCACCACCGCGATGCCGCACCGCGCCGATAGGTCA
ACCCCCCGCCACGCCACCGTTGCACCGTCGTTCGGGTCCCCGGCACACTC
TCACAGGCCCCCCCCGCAGGCCCCCGCGACAAGGCTCGAGCTTGGCAGGG
TAACTCCGCCCGGACCGTTTGCCTCGTTCGGTCTGAGGGGGGACACCGAC
GTCGATATCGAGATGAGCAGGCTCGGGTCCCCGACGTCCGCCCCGATGTC
CCTAGCCGGCGGGGATTTCGCGATCGGCGCCTACACGGGA
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