mRNA_L-elsbetiae_contig101.152.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.152.1
Unique NamemRNA_L-elsbetiae_contig101.152.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig101.152.1 vs. uniprot
Match: A0A6H5JE23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE23_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.300e-10
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = -2 
Query:  252 YPLDTACCTLAMSLTFPKKSPIESGPFMKLQVSQEATTLSFW 377
            YP D  CC+LAMSLTFPK    E  PF+KLQV QEATTLSFW
Sbjct:   63 YPTDNDCCSLAMSLTFPKNFFTERDPFIKLQVLQEATTLSFW 104
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BLAST of mRNA_L-elsbetiae_contig101.152.1 vs. uniprot
Match: A0A6C0B6K3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0B6K3_9ZZZZ)

HSP 1 Score: 62.8 bits (151), Expect = 5.830e-9
Identity = 25/80 (31.25%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:  136 VSINFDEYSSIVRTACWYCGGFTYKGYSGVDRVQNAGAYQKDNVVASCETCNFMKGPLSIGDFLGKVKDIARVQHAVSKG 375
            + +  +++ SI +  C+YCG    KG++G+DR+ +   Y+ DN V+ C  CN MKG +    F+ +V+ I      ++ G
Sbjct:  254 IDLTIEQFESITKQPCYYCGIIQDKGFNGIDRMDSTKGYEIDNCVSCCTECNMMKGAVDNITFIQRVEHILTHNSMITNG 333
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BLAST of mRNA_L-elsbetiae_contig101.152.1 vs. uniprot
Match: A0A1X7QBF9_AZOLI (Uncharacterized protein n=1 Tax=Azospirillum lipoferum TaxID=193 RepID=A0A1X7QBF9_AZOLI)

HSP 1 Score: 51.6 bits (122), Expect = 3.950e-5
Identity = 29/106 (27.36%), Postives = 50/106 (47.17%), Query Frame = 1 
Query:  103 FKEQAKRRSIQVSINFDEYSSIVRTACWYCG-------------GFTYKG----YSGVDRVQNAGAYQKDNVVASCETCNFMKGPLSIGDFLGKVKDIARVQHAVS 369
            ++  AKR     +++F++   ++   C YCG                Y G    Y+G+DRV NA  Y ++N V+ C+ CN  K  + +GDF   ++ +   Q  V+
Sbjct:  180 YQSVAKRNGRVFTLSFEDVQDLITRNCRYCGVPPCTQHRILFSGKQPYPGEPFLYNGIDRVDNAVGYVRENCVSCCKRCNQAKLDMDVGDFKAWLRQVHLYQKRVA 285
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE23_9PHAE8.300e-1071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6C0B6K3_9ZZZZ5.830e-931.25Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A1X7QBF9_AZOLI3.950e-527.36Uncharacterized protein n=1 Tax=Azospirillum lipof... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:58385..58762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.9049575-CDS-L-elsbetiae_contig101:58384..587621622815241.9049575-CDS-L-elsbetiae_contig101:58384..58762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 58385..58762 -
1691682790.9193335-CDS-L-elsbetiae_contig101:58384..587621691682790.9193335-CDS-L-elsbetiae_contig101:58384..58762Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 58385..58762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.152.1prot_L-elsbetiae_contig101.152.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 58385..58762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.152.1

>prot_L-elsbetiae_contig101.152.1 ID=prot_L-elsbetiae_contig101.152.1|Name=mRNA_L-elsbetiae_contig101.152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
RRIRASQNKRYRRTAVYKKHLEARKTDVVYRWRVFKEQAKRRSIQVSINF
DEYSSIVRTACWYCGGFTYKGYSGVDRVQNAGAYQKDNVVASCETCNFMK
GPLSIGDFLGKVKDIARVQHAVSKG*
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mRNA from alignment at L-elsbetiae_contig101:58385..58762-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.152.1 ID=mRNA_L-elsbetiae_contig101.152.1|Name=mRNA_L-elsbetiae_contig101.152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig101:58385..58762- (Laminarionema elsbetiae ELsaHSoW15)
AGACGTATCCGAGCCTCGCAAAACAAGCGATACCGAAGGACCGCGGTGTA
CAAGAAGCACTTGGAAGCCAGGAAAACCGATGTGGTGTACAGGTGGCGTG
TGTTCAAGGAGCAGGCTAAAAGGCGGAGTATTCAGGTTTCGATTAACTTT
GACGAGTACAGCAGCATCGTGCGCACAGCTTGCTGGTACTGCGGCGGTTT
TACGTACAAGGGGTACTCAGGCGTAGACCGCGTACAGAACGCGGGGGCGT
ACCAGAAAGACAACGTTGTGGCTTCCTGTGAAACTTGCAACTTCATGAAA
GGACCACTTTCGATCGGCGATTTCTTGGGAAAGGTCAAGGACATCGCGAG
AGTGCAACACGCAGTGTCTAAAGGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:58385..58762-

>mRNA_L-elsbetiae_contig101.152.1 ID=mRNA_L-elsbetiae_contig101.152.1|Name=mRNA_L-elsbetiae_contig101.152.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig101:58385..58762- (Laminarionema elsbetiae ELsaHSoW15)
AGACGTATCCGAGCCTCGCAAAACAAGCGATACCGAAGGACCGCGGTGTA
CAAGAAGCACTTGGAAGCCAGGAAAACCGATGTGGTGTACAGGTGGCGTG
TGTTCAAGGAGCAGGCTAAAAGGCGGAGTATTCAGGTTTCGATTAACTTT
GACGAGTACAGCAGCATCGTGCGCACAGCTTGCTGGTACTGCGGCGGTTT
TACGTACAAGGGGTACTCAGGCGTAGACCGCGTACAGAACGCGGGGGCGT
ACCAGAAAGACAACGTTGTGGCTTCCTGTGAAACTTGCAACTTCATGAAA
GGACCACTTTCGATCGGCGATTTCTTGGGAAAGGTCAAGGACATCGCGAG
AGTGCAACACGCAGTGTCTAAAGGGTAGAGACGTATCCGAGCCTCGCAAA
ACAAGCGATACCGAAGGACCGCGGTGTACAAGAAGCACTTGGAAGCCAGG
AAAACCGATGTGGTGTACAGGTGGCGTGTGTTCAAGGAGCAGGCTAAAAG
GCGGAGTATTCAGGTTTCGATTAACTTTGACGAGTACAGCAGCATCGTGC
GCACAGCTTGCTGGTACTGCGGCGGTTTTACGTACAAGGGGTACTCAGGC
GTAGACCGCGTACAGAACGCGGGGGCGTACCAGAAAGACAACGTTGTGGC
TTCCTGTGAAACTTGCAACTTCATGAAAGGACCACTTTCGATCGGCGATT
TCTTGGGAAAGGTCAAGGACATCGCGAGAGTGCAACACGCAGTGTCTAAA
GGGTAG
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