mRNA_L-elsbetiae_contig101.149.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.149.1
Unique NamemRNA_L-elsbetiae_contig101.149.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig101.149.1 vs. uniprot
Match: B5LWA7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWA7_9PHYC)

HSP 1 Score: 253 bits (645), Expect = 1.570e-81
Identity = 120/230 (52.17%), Postives = 167/230 (72.61%), Query Frame = 1
Query:    7 VAKSFDVVDLGSINLAEAKQSKSAAGCKTARIKGPGGKPLLIQTPPMTIPWNIEPRKMDDASSVTANLALSFLGMMEEDVDDDLYNFMNFMRDFDIRIKSILVKTSGALGKKSDERFLDANFKDSIKESSNGNYPPTFQPKIWLNVKDGGDHSMPEDYVMDIKVFNFGGKLLDCGELQKGCTAAAIIEPSYVWCSALGVGITWVAKQVAVKPNTEEKFAFNLSDKFDHLK 696
            +AKS+   D+ ++ L++AK SK+ +GCKTA I   G   + IQTP MT+PW+I P+K+DD S+V A LALSF+ + E D D+++  F NF+ DFDI+IK+++ +  G LGK S++  LDA+F+ SIK+S++G YPPTFQ KIWL++K GG  S  +D+ MD+ VF+  G  L   E++KGC AAAII PSYVWCSALG+GITWVAKQVA++P  E  F F L  +FD ++
Sbjct:    1 MAKSYADFDISTLKLSQAKTSKANSGCKTAYISAIGCANIAIQTPLMTLPWDIVPKKLDDTSNVRAELALSFMNINEYDPDNEILKFRNFLTDFDIKIKTLVAEMKGVLGKNSEDARLDASFRSSIKDSTSGEYPPTFQSKIWLSLKQGGAPSCVDDFEMDVMVFDMNGAQLSPTEMRKGCPAAAIIVPSYVWCSALGLGITWVAKQVAIQPKGESTFGFTLGSEFDEVR 230          
BLAST of mRNA_L-elsbetiae_contig101.149.1 vs. uniprot
Match: Q6XLU5_9PHYC (FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU5_9PHYC)

HSP 1 Score: 251 bits (642), Expect = 4.190e-81
Identity = 120/228 (52.63%), Postives = 160/228 (70.18%), Query Frame = 1
Query:    1 MVVAKSFDVVDLGSINLAEAKQSKSAAGCKTARIKGPGGKPLLIQTPPMTIPWNIEPRKMDDASSVTANLALSFLGMMEEDVDDDLYNFMNFMRDFDIRIKSILVKTSGALGKKSDERFLDANFKDSIKESSNGNYPPTFQPKIWLNVKDGGDHSMPEDYVMDIKVFNFGGKLLDCGELQKGCTAAAIIEPSYVWCSALGVGITWVAKQVAVKPNTEEKFAFNLSDKF 684
            M   K F   D+ ++ L+  K SK+ +GCKTA +   G   + IQTP MT+PW+I P+KMDD S+V   L+LSF+GM E D D++L  F  F+  FD R+K+++ +T+GA+GK S+E  L  NF+ +IKES+ GNYPPT Q KIWLN+K GG  S  ED+ MD+ VF+  G  ++  ++QKGC AAAI+EPSYVWCSALGVGITWVAKQVAV+P +   F FNL +K 
Sbjct:    1 MTSPKCFYDFDISTVKLSPPKTSKANSGCKTAYLTTTGSMKIAIQTPVMTLPWDIVPKKMDDVSNVRGELSLSFVGMDERDADNELCQFKTFVEHFDERVKALISETNGAMGKNSEETRLGTNFRPTIKESATGNYPPTIQSKIWLNLKQGGSPSSVEDFDMDVMVFDMDGSRINTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVAVQPQSVSTFGFNLGNKL 228          
BLAST of mRNA_L-elsbetiae_contig101.149.1 vs. uniprot
Match: Q6XM26_9PHYC (FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM26_9PHYC)

HSP 1 Score: 247 bits (631), Expect = 3.090e-79
Identity = 117/223 (52.47%), Postives = 162/223 (72.65%), Query Frame = 1
Query:    4 VVAKSFDVVDLGSINLAEAKQSKSAAGCKTARIKGPGGKPLLIQTPPMTIPWNIEPRKMDDASSVTANLALSFLGMMEEDVDDDLYNFMNFMRDFDIRIKSILVKTSGALGKKSDERFLDANFKDSIKESSNGNYPPTFQPKIWLNVKDGGDHSMPEDYVMDIKVFNFGGKLLDCGELQKGCTAAAIIEPSYVWCSALGVGITWVAKQVAVKPNTEEKFAFNL 672
            + A  F   D+ ++ L+  K SK+  GCKTA I   G   + IQTP MT+PW+I P+K+DD S+V A L+LSF+G+ E+D +++L  F +F+  FD +IK+++ +T GA+GK S++  L+A+F+DSIKES+ GNYPPT Q KIWLN+K GG  S+ ED+ MD+ VF+  G  +   ++QKGC AAAI+EPSYVWCSALGVGITWVAKQVA++P +   F FNL
Sbjct:   13 MAATHFSEFDVSTLKLSPPKTSKANVGCKTAYITAVGSVKIAIQTPIMTLPWDIVPKKLDDVSNVRAELSLSFVGINEDDPENELKKFKDFLSTFDQKIKTLISETHGAMGKNSEDTRLEASFRDSIKESATGNYPPTIQSKIWLNLKQGGSPSIVEDFDMDVMVFDLEGCQIQTDQMQKGCPAAAILEPSYVWCSALGVGITWVAKQVALQPKSASTFGFNL 235          
BLAST of mRNA_L-elsbetiae_contig101.149.1 vs. uniprot
Match: Q8QNJ7_ESV1K (EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNJ7_ESV1K)

HSP 1 Score: 145 bits (365), Expect = 1.040e-38
Identity = 88/232 (37.93%), Postives = 129/232 (55.60%), Query Frame = 1
Query:   13 KSFDVVDLGSINLAEAKQSKSAAGCKTARIKGPGGKPLLIQTPPMTIPWNIEPRKMDDASSVTANLALSFLGMMEEDVDDD-LYNFMNFMRDFDIRIKSILVKTSGALGKKS-DERFLDANFKDSIKESSNGNYPPTFQPKIWLNV-KDGGDHSMPEDYVMDIKVFNFGGKLLDCGELQKGCTAAAIIEPSYVWCSALGVGITWVAKQVAVKPN-TEEKFAFNLSDKFDHLK 696
            K+F  VD  +I     +  K+  G K A + G  G+ L+ +TP M IPWN E RK ++    ++ +ALSF GM ++  DD  L  F NF+   D R+K + V+    L +K+ DE  ++A F+ S+K S+N  YPPTFQ KI L   K+     + E   M I VF      +   EL+ GC A+ I E SYVWC+ + +GI+W+ K V V+P  +E +F F   D+F  +K
Sbjct:   12 KTFPDVDFSAIKFDGIRAGKN--GMKFASLVGGNGRRLVAETPAMRIPWNTEIRKSEETGQCSSKIALSFQGMSDDQADDGKLRRFFNFLNGVDERVKELAVQNKSELWQKAMDEGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDVNEAMDMKIVVFRKDKTPVSPKELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKPSETEFQFTDMDEFADIK 241          
BLAST of mRNA_L-elsbetiae_contig101.149.1 vs. uniprot
Match: D8LPA8_ECTSI (EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA8_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.780e-36
Identity = 87/238 (36.55%), Postives = 127/238 (53.36%), Query Frame = 1
Query:   13 KSFDVVDLGSINLAEAKQSKSAAGCKTARIKGPGGKPLLIQTPPMTIPWNIEPRKMDDASSVTANLALSFLGMMEEDVDDD-LYNFMNFMRDFDIRIKSILVKTSGALGKKS-DERFLDANFKDSIKESSNGNYPPTFQPKIWLNV-KDGGDHSMPEDYVMDIKVFNFGGKLLDCGELQKGCTAAAIIEPSYVWCSALGVGITWVAKQVAVKPN-TEEKFAFNLSDKFDHLKGESEDN 714
            K+F  VD  +I     +  K+  G K A + G  G+ L+ +TP M IPWN E RK ++    ++ +ALSF GM ++  DD  L  F NF+   D R+K +  +    L +K+ D   ++A F+ S+K S+N  YPPTFQ KI L   K+       E   M I VF      +   EL+ GC A+ I E SYVWC+ + +GI+W+ K V V+P  +E  F F   + F  +K +  DN
Sbjct:   12 KTFPDVDFSAIKFDGIRAGKN--GMKFANLVGGNGRRLVAETPAMKIPWNTEIRKSEETGQCSSKIALSFQGMSDDQEDDGKLRRFFNFLNGVDKRVKELAAQNKTELWQKTMDAGKIEAYFQSSVKASTNDKYPPTFQGKIPLQEGKNPSSEDANEAMDMKIVVFRKDKTPVSPRELKGGCLASVIAEASYVWCTPMMIGISWIVKFVLVEPKPSETAFQFTDMEDFADVKDDGSDN 247          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B5LWA7_9PHYC1.570e-8152.17Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLU5_9PHYC4.190e-8152.63FirrV-1-I1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XM26_9PHYC3.090e-7952.47FirrV-1-B10 n=1 Tax=Feldmannia irregularis virus a... [more]
Q8QNJ7_ESV1K1.040e-3837.93EsV-1-76 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA8_ECTSI2.780e-3636.55EsV-1-76 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:39076..39795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size720
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.7870202-CDS-L-elsbetiae_contig101:39075..397951622815241.7870202-CDS-L-elsbetiae_contig101:39075..39795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 39076..39795 +
1691682790.8592155-CDS-L-elsbetiae_contig101:39075..397951691682790.8592155-CDS-L-elsbetiae_contig101:39075..39795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 39076..39795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.149.1prot_L-elsbetiae_contig101.149.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 39076..39795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.149.1

>prot_L-elsbetiae_contig101.149.1 ID=prot_L-elsbetiae_contig101.149.1|Name=mRNA_L-elsbetiae_contig101.149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=240bp
MVVAKSFDVVDLGSINLAEAKQSKSAAGCKTARIKGPGGKPLLIQTPPMT
IPWNIEPRKMDDASSVTANLALSFLGMMEEDVDDDLYNFMNFMRDFDIRI
KSILVKTSGALGKKSDERFLDANFKDSIKESSNGNYPPTFQPKIWLNVKD
GGDHSMPEDYVMDIKVFNFGGKLLDCGELQKGCTAAAIIEPSYVWCSALG
VGITWVAKQVAVKPNTEEKFAFNLSDKFDHLKGESEDNED
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mRNA from alignment at L-elsbetiae_contig101:39076..39795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.149.1 ID=mRNA_L-elsbetiae_contig101.149.1|Name=mRNA_L-elsbetiae_contig101.149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig101:39076..39795+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGTTGCAAAGTCTTTCGATGTCGTCGACTTGGGCTCCATTAACTT GGCCGAAGCCAAGCAGAGCAAATCTGCCGCTGGTTGCAAAACCGCCAGGA TCAAGGGACCTGGAGGAAAACCTTTGCTCATCCAGACTCCCCCCATGACT ATACCGTGGAATATCGAGCCCAGGAAGATGGATGACGCCTCTAGTGTAAC TGCCAACCTTGCACTGTCATTCTTGGGAATGATGGAAGAAGACGTGGACG ATGATTTATACAATTTCATGAACTTCATGAGGGACTTCGACATCAGGATC AAGTCAATCTTGGTGAAGACGTCGGGTGCCCTCGGGAAGAAATCTGATGA AAGGTTTCTCGACGCAAATTTCAAGGATTCCATTAAGGAGTCCTCGAATG GTAACTATCCCCCCACTTTTCAACCCAAGATCTGGTTGAACGTGAAAGAC GGCGGGGATCATTCCATGCCCGAAGACTACGTCATGGACATCAAGGTCTT CAATTTCGGCGGCAAGCTTCTCGACTGTGGGGAGCTGCAGAAAGGTTGCA CGGCGGCGGCCATCATTGAGCCTTCATACGTCTGGTGCTCGGCCCTTGGC GTTGGGATCACTTGGGTTGCCAAGCAGGTTGCTGTGAAACCAAACACAGA GGAGAAATTCGCATTCAATCTGAGTGACAAATTTGACCATTTAAAGGGCG AGAGCGAGGACAACGAGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:39076..39795+

>mRNA_L-elsbetiae_contig101.149.1 ID=mRNA_L-elsbetiae_contig101.149.1|Name=mRNA_L-elsbetiae_contig101.149.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1440bp|location=Sequence derived from alignment at L-elsbetiae_contig101:39076..39795+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGTTGCAAAGTCTTTCGATGTCGTCGACTTGGGCTCCATTAACTT
GGCCGAAGCCAAGCAGAGCAAATCTGCCGCTGGTTGCAAAACCGCCAGGA
TCAAGGGACCTGGAGGAAAACCTTTGCTCATCCAGACTCCCCCCATGACT
ATACCGTGGAATATCGAGCCCAGGAAGATGGATGACGCCTCTAGTGTAAC
TGCCAACCTTGCACTGTCATTCTTGGGAATGATGGAAGAAGACGTGGACG
ATGATTTATACAATTTCATGAACTTCATGAGGGACTTCGACATCAGGATC
AAGTCAATCTTGGTGAAGACGTCGGGTGCCCTCGGGAAGAAATCTGATGA
AAGGTTTCTCGACGCAAATTTCAAGGATTCCATTAAGGAGTCCTCGAATG
GTAACTATCCCCCCACTTTTCAACCCAAGATCTGGTTGAACGTGAAAGAC
GGCGGGGATCATTCCATGCCCGAAGACTACGTCATGGACATCAAGGTCTT
CAATTTCGGCGGCAAGCTTCTCGACTGTGGGGAGCTGCAGAAAGGTTGCA
CGGCGGCGGCCATCATTGAGCCTTCATACGTCTGGTGCTCGGCCCTTGGC
GTTGGGATCACTTGGGTTGCCAAGCAGGTTGCTGTGAAACCAAACACAGA
GGAGAAATTCGCATTCAATCTGAGTGACAAATTTGACCATTTAAAGGGCG
AGAGCGAGGACAACGAGGACATGGTCGTTGCAAAGTCTTTCGATGTCGTC
GACTTGGGCTCCATTAACTTGGCCGAAGCCAAGCAGAGCAAATCTGCCGC
TGGTTGCAAAACCGCCAGGATCAAGGGACCTGGAGGAAAACCTTTGCTCA
TCCAGACTCCCCCCATGACTATACCGTGGAATATCGAGCCCAGGAAGATG
GATGACGCCTCTAGTGTAACTGCCAACCTTGCACTGTCATTCTTGGGAAT
GATGGAAGAAGACGTGGACGATGATTTATACAATTTCATGAACTTCATGA
GGGACTTCGACATCAGGATCAAGTCAATCTTGGTGAAGACGTCGGGTGCC
CTCGGGAAGAAATCTGATGAAAGGTTTCTCGACGCAAATTTCAAGGATTC
CATTAAGGAGTCCTCGAATGGTAACTATCCCCCCACTTTTCAACCCAAGA
TCTGGTTGAACGTGAAAGACGGCGGGGATCATTCCATGCCCGAAGACTAC
GTCATGGACATCAAGGTCTTCAATTTCGGCGGCAAGCTTCTCGACTGTGG
GGAGCTGCAGAAAGGTTGCACGGCGGCGGCCATCATTGAGCCTTCATACG
TCTGGTGCTCGGCCCTTGGCGTTGGGATCACTTGGGTTGCCAAGCAGGTT
GCTGTGAAACCAAACACAGAGGAGAAATTCGCATTCAATCTGAGTGACAA
ATTTGACCATTTAAAGGGCGAGAGCGAGGACAACGAGGAC
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