mRNA_L-elsbetiae_contig101.139.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.139.1
Unique NamemRNA_L-elsbetiae_contig101.139.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig101.139.1 vs. uniprot
Match: B5LWD6_9PHYC (Putative lipase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWD6_9PHYC)

HSP 1 Score: 280 bits (717), Expect = 3.020e-91
Identity = 131/263 (49.81%), Postives = 183/263 (69.58%), Query Frame = 1 
Query:    7 YSYTWNHILLFAQMCDCEDTKVTVTENWVRMLENQQEKMFPFTLWPLTYRTSAVIASTSLVSPAIVTTSQKKQSGADICRVVLKIYLSNEVIIMCFQHVGDDHEGSL-CPHLCRFDADAVTG------GHGVHSSNKTQPLVPCGLMSSYSKIKKKAMIELSKFRSTQGNDTFSCIVCTGYDVGAVLATFMASDLANEFKSEAEFMGLEESAITVDCVCFSIPQVANDKYWEEFNSLVDKRVSFKHKEEVPVQHPQPTIFVGN 774
            Y++TWNH+ LFAQMCDC D K TVT+NW+RMLE Q E +FPFTLWPLTYRTSAVI STSL +P + +   K +     C+V++K Y SNEV+++CFQH+ +       C   C   A  V         HG HS++ +QPLV CG ++ +S++KK+ M E +KF S + +   S ++C GYD GAVLATFMA++LA++FK EAEFMG E   +TVDC+ FSIP++ N+ YW++F+S+VD+++  KH++E   + P+  IFVGN
Sbjct:    4 YTHTWNHLKLFAQMCDCNDDKHTVTDNWIRMLEKQHESVFPFTLWPLTYRTSAVILSTSLSTPKVKSYDLKPEQ----CKVIVKFYKSNEVVMICFQHISEGSSMDCSCTEWCELHAGIVPEEHDSPCSHGQHSTDSSQPLVKCGHLTMFSQVKKRVMSEFAKFNSQENDRDVSVVICMGYDKGAVLATFMAAELASDFKLEAEFMGFEAPKVTVDCISFSIPELGNEVYWKDFDSIVDRKIHVKHRKERSSKRPKSCIFVGN 262
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BLAST of mRNA_L-elsbetiae_contig101.139.1 vs. uniprot
Match: Q6XLZ7_9PHYC (FirrV-1-B39 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ7_9PHYC)

HSP 1 Score: 241 bits (616), Expect = 6.600e-76
Identity = 117/257 (45.53%), Postives = 170/257 (66.15%), Query Frame = 1 
Query:   13 YTWNHILLFAQMCDCEDTKVTVTENWVRMLENQQEKMFPFTLWPLTYRTSAVIASTSLVSPAIVTTSQKKQSGADICRVVLKIYLSNEVIIMCFQHVGDDHEGSL-CPHLCRFDADAVTGGHGVHSSNKTQPLVPCGLMSSYSKIKKKAMIELSKFRSTQGNDTFSCIVCTGYDVGAVLATFMASDLANEFKSEAEFMGLEESAITVDCVCFSIPQVANDKYWEEFNSLVDKRVSFKHK-EEVPVQHPQPTIFVGNK 777
            ++W H+ LFAQ+CDC+D    VTENWV+MLENQ E +FPFTLWPLTYRTS VI S+SL SP +    ++       C + +K+Y SNEV+++CFQH   D + S  C   C+F        HG HS++ + PLV C  +S ++ I+++ M E SK    +     S ++CTGYD G +LATFMAS+LA++FK EAEFM  +   ++VDCV FS+P+V ND YW++FN LVD ++  +H  ++   + P+P++ VG++
Sbjct:   28 HSWYHLKLFAQICDCDDDAQNVTENWVKMLENQHEMVFPFTLWPLTYRTSTVILSSSLSSPKV----KRYTVDPHQCEITVKLYRSNEVVVICFQHRQQDAKVSCPCNEWCKFQT-TTDNHHGQHSNDNSIPLVKCQPLSIFALIRQRVMAEFSKMDQNE----ISAVICTGYDKGGMLATFMASELASDFKMEAEFMEYDHPRVSVDCVSFSLPEVGNDTYWKKFNGLVDNQIHVRHHTDKAAKKSPKPSVVVGSR 275
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BLAST of mRNA_L-elsbetiae_contig101.139.1 vs. uniprot
Match: D8LP88_ECTSI (EsV-1-55 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP88_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 9.000e-45
Identity = 89/252 (35.32%), Postives = 137/252 (54.37%), Query Frame = 1 
Query:    1 MIYSYTWNHILLFAQMCDCEDTKVTVTENWVRMLENQQEKMFPFTLWPLTYRTSAVIASTSLVSPAIVTTSQKKQSGADICRVVLKIYLSNEVIIMCFQH-VGDDHEGSLCPHLC--RFDADAVTGGHG------------VHSSNKTQPLVPCGLMSSYSKIKKKAMIELSKFRSTQGNDTFSCIVCTGYDVGAVLATFMASDLANEFKSEAEFMGLEESAITVDCVCFSIPQVANDKYWEEFNSLVDKRV 711
            M Y YTWNH+LL A++C   D   +VT +WV++ E   ++ FPFTLWPLTYRT  V  S ++ +P  V T+             +K++ +NEV+I+C Q    D   GS+C H C   FD D  TG                HS +KT+PL+ C +   Y+++K K    +   +     D   C++CTGY   A +A+ +A D++  +++E EF+GLE + + VD V FS   VA+  YW++ +  +DK +
Sbjct:    1 MKYEYTWNHLLLLAKVCGKTDDDDSVTASWVQITEEHNKQTFPFTLWPLTYRTCEVTTSPAMCTPVQVRTTD----------YTVKVFKANEVVIVCIQDSFQDSSRGSVCSHPCLAEFDGDGHTGSGSDFLSSDAENHVDKHSLSKTEPLLSCHVAHCYNRMKAKVNDVIYDIQ-----DNVECVICTGYGEAAAMASCVACDMSRSYEAEKEFLGLETTRVLVDFVGFSDGIVASPTYWKQNSVSIDKYI 237
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BLAST of mRNA_L-elsbetiae_contig101.139.1 vs. uniprot
Match: Q8QNL2_ESV1K (EsV-1-55 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL2_ESV1K)

HSP 1 Score: 160 bits (404), Expect = 7.370e-44
Identity = 91/273 (33.33%), Postives = 144/273 (52.75%), Query Frame = 1 
Query:    1 MIYSYTWNHILLFAQMCDCEDTKVTVTENWVRMLENQQEKMFPFTLWPLTYRTSAVIASTSLVSPAIVTTSQKKQSGADICRVVLKIYLSNEVIIMCFQHVGDDHE-GSLCPHLC--RFDADAVTGGHGV------------HSSNKTQPLVPCGLMSSYSKIKKKAMIELSKFRSTQGNDTFSCIVCTGYDVGAVLATFMASDLANEFKSEAEFMGLEESAITVDCVCFSIPQVANDKYWEEFNSLVDKRVSFKHKEEVPVQHPQPTIFVGN 774
            M Y YTWNH+LL A++C   D   +VT +WV++ E    + FPFTLWPLTYRT  V  S ++ +P  V T+            ++K++ +NEV+I+C Q    D    S+C H C   FD D +TG                HS +K++PL+PC     Y+++K K    +   +     D+  C++CTGY   A +A+ +A D++  +++E EF+GLE + + VD V FS   +A+  YW++ +  +D+ +       + V   Q    VGN
Sbjct:    1 MKYEYTWNHLLLLARVCGKTDDDDSVTASWVQITEEHNRQTFPFTLWPLTYRTCEVTTSPAMCTPVQVRTTD----------YIVKVFKANEVVIVCIQDSFQDSSCDSVCSHPCLAEFDGDNLTGSGSELSPSNAENHVDKHSPSKSEPLLPCHTAHCYNRMKAKVNDVIYDIQ-----DSVDCVICTGYGEAAAMASCVACDMSQSYEAEKEFLGLETTRVRVDFVGFSDCIIASPTYWKQNSVSIDQYI-------LVVFEDQEATTVGN 251
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
B5LWD6_9PHYC3.020e-9149.81Putative lipase n=1 Tax=Feldmannia species virus T... [more]
Q6XLZ7_9PHYC6.600e-7645.53FirrV-1-B39 n=1 Tax=Feldmannia irregularis virus a... [more]
D8LP88_ECTSI9.000e-4535.32EsV-1-55 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNL2_ESV1K7.370e-4433.33EsV-1-55 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:17716..18492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-55
Ec32 orthologEc-06_006240.1
Exons1
Model size777
Cds size777
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.3512232-CDS-L-elsbetiae_contig101:17715..184921622815241.3512232-CDS-L-elsbetiae_contig101:17715..18492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 17716..18492 -
1691682790.7287517-CDS-L-elsbetiae_contig101:17715..184921691682790.7287517-CDS-L-elsbetiae_contig101:17715..18492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 17716..18492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.139.1prot_L-elsbetiae_contig101.139.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 17716..18492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.139.1

>prot_L-elsbetiae_contig101.139.1 ID=prot_L-elsbetiae_contig101.139.1|Name=mRNA_L-elsbetiae_contig101.139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp
MIYSYTWNHILLFAQMCDCEDTKVTVTENWVRMLENQQEKMFPFTLWPLT
YRTSAVIASTSLVSPAIVTTSQKKQSGADICRVVLKIYLSNEVIIMCFQH
VGDDHEGSLCPHLCRFDADAVTGGHGVHSSNKTQPLVPCGLMSSYSKIKK
KAMIELSKFRSTQGNDTFSCIVCTGYDVGAVLATFMASDLANEFKSEAEF
MGLEESAITVDCVCFSIPQVANDKYWEEFNSLVDKRVSFKHKEEVPVQHP
QPTIFVGNK
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mRNA from alignment at L-elsbetiae_contig101:17716..18492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.139.1 ID=mRNA_L-elsbetiae_contig101.139.1|Name=mRNA_L-elsbetiae_contig101.139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=777bp|location=Sequence derived from alignment at L-elsbetiae_contig101:17716..18492- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTACTCTTACACATGGAACCACATCTTACTCTTTGCACAGATGTG
TGACTGTGAAGATACGAAAGTCACAGTTACAGAGAATTGGGTTCGAATGT
TAGAAAATCAGCAAGAAAAAATGTTCCCATTTACTCTCTGGCCCTTGACG
TATCGCACGAGTGCAGTCATCGCCTCCACGTCTCTCGTGAGCCCTGCGAT
AGTCACGACTTCGCAAAAAAAACAATCGGGTGCCGATATCTGTCGTGTCG
TGTTGAAGATATACCTTTCGAATGAAGTGATAATCATGTGCTTTCAGCAC
GTGGGTGACGATCACGAGGGCTCTCTCTGCCCCCATTTATGTAGGTTCGA
CGCCGATGCGGTGACGGGAGGTCACGGTGTACATTCTTCGAATAAGACCC
AGCCTCTGGTTCCATGTGGCCTGATGAGCTCGTATTCTAAAATAAAGAAG
AAAGCCATGATCGAGTTAAGTAAATTTAGATCAACGCAAGGAAACGACAC
GTTTTCCTGCATAGTGTGTACGGGTTACGACGTAGGGGCCGTATTGGCCA
CATTTATGGCATCTGATCTAGCAAACGAGTTCAAGTCGGAGGCAGAATTC
ATGGGTTTGGAAGAATCGGCGATTACGGTCGATTGCGTTTGTTTTTCAAT
CCCGCAAGTAGCAAACGACAAGTACTGGGAAGAGTTCAATTCCCTGGTAG
ATAAGCGCGTAAGTTTTAAACACAAGGAGGAGGTCCCGGTGCAACACCCC
CAACCAACAATCTTCGTGGGGAACAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:17716..18492-

>mRNA_L-elsbetiae_contig101.139.1 ID=mRNA_L-elsbetiae_contig101.139.1|Name=mRNA_L-elsbetiae_contig101.139.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig101:17716..18492- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTACTCTTACACATGGAACCACATCTTACTCTTTGCACAGATGTG
TGACTGTGAAGATACGAAAGTCACAGTTACAGAGAATTGGGTTCGAATGT
TAGAAAATCAGCAAGAAAAAATGTTCCCATTTACTCTCTGGCCCTTGACG
TATCGCACGAGTGCAGTCATCGCCTCCACGTCTCTCGTGAGCCCTGCGAT
AGTCACGACTTCGCAAAAAAAACAATCGGGTGCCGATATCTGTCGTGTCG
TGTTGAAGATATACCTTTCGAATGAAGTGATAATCATGTGCTTTCAGCAC
GTGGGTGACGATCACGAGGGCTCTCTCTGCCCCCATTTATGTAGGTTCGA
CGCCGATGCGGTGACGGGAGGTCACGGTGTACATTCTTCGAATAAGACCC
AGCCTCTGGTTCCATGTGGCCTGATGAGCTCGTATTCTAAAATAAAGAAG
AAAGCCATGATCGAGTTAAGTAAATTTAGATCAACGCAAGGAAACGACAC
GTTTTCCTGCATAGTGTGTACGGGTTACGACGTAGGGGCCGTATTGGCCA
CATTTATGGCATCTGATCTAGCAAACGAGTTCAAGTCGGAGGCAGAATTC
ATGGGTTTGGAAGAATCGGCGATTACGGTCGATTGCGTTTGTTTTTCAAT
CCCGCAAGTAGCAAACGACAAGTACTGGGAAGAGTTCAATTCCCTGGTAG
ATAAGCGCGTAAGTTTTAAACACAAGGAGGAGGTCCCGGTGCAACACCCC
CAACCAACAATCTTCGTGGGGAACAAAATGATTTACTCTTACACATGGAA
CCACATCTTACTCTTTGCACAGATGTGTGACTGTGAAGATACGAAAGTCA
CAGTTACAGAGAATTGGGTTCGAATGTTAGAAAATCAGCAAGAAAAAATG
TTCCCATTTACTCTCTGGCCCTTGACGTATCGCACGAGTGCAGTCATCGC
CTCCACGTCTCTCGTGAGCCCTGCGATAGTCACGACTTCGCAAAAAAAAC
AATCGGGTGCCGATATCTGTCGTGTCGTGTTGAAGATATACCTTTCGAAT
GAAGTGATAATCATGTGCTTTCAGCACGTGGGTGACGATCACGAGGGCTC
TCTCTGCCCCCATTTATGTAGGTTCGACGCCGATGCGGTGACGGGAGGTC
ACGGTGTACATTCTTCGAATAAGACCCAGCCTCTGGTTCCATGTGGCCTG
ATGAGCTCGTATTCTAAAATAAAGAAGAAAGCCATGATCGAGTTAAGTAA
ATTTAGATCAACGCAAGGAAACGACACGTTTTCCTGCATAGTGTGTACGG
GTTACGACGTAGGGGCCGTATTGGCCACATTTATGGCATCTGATCTAGCA
AACGAGTTCAAGTCGGAGGCAGAATTCATGGGTTTGGAAGAATCGGCGAT
TACGGTCGATTGCGTTTGTTTTTCAATCCCGCAAGTAGCAAACGACAAGT
ACTGGGAAGAGTTCAATTCCCTGGTAGATAAGCGCGTAAGTTTTAAACAC
AAGGAGGAGGTCCCGGTGCAACACCCCCAACCAACAATCTTCGTGGGGAA
CAAA
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