mRNA_L-elsbetiae_contig101.136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.136.1
Unique NamemRNA_L-elsbetiae_contig101.136.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig101.136.1 vs. uniprot
Match: Q6XM01_9PHYC (FirrV-1-B35 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM01_9PHYC)

HSP 1 Score: 207 bits (526), Expect = 1.710e-58
Identity = 145/439 (33.03%), Postives = 226/439 (51.48%), Query Frame = 1 
Query:   13 LAPPLLALIFEYHRAYQVKLLRE---VCKSFRDVLDDGGNSY-WKDMLGKYSSPLVKT--RVIYGKSVGVTALILKESFLLKTCVSCGLW-----FNTKKNRLHDILLCGRCSKKQVFRIVNLRKACTNYFLDYNVQKENHILVKLKKGRAYEVLLNHVRNVALAKYPNGDLEKRMNKRFSRLFRTELRKQKEKKKRIVDIGYKFCDILWETPSRVDKVLRDQNVLKDLVQKFGSRHDVFGDTLENRVRALRKCEVAARHLYDFGAMLTYMRKIHLLDDCYEVTSG---HRCHPRNIFRHHVNEGLHFYELSRLHADSREELLRRSSDVQIYLVQKKQR----EEGRKQLAIAMCAEDSTTYQADFFNSFILQGEGNPVFLARQQREKEYLQHNNLAWETGNFLLSGHDQENAQRLATNNVLQYTKGYPPMMRTCIIDL 1275
            L  P+L  IF +H+      LRE   VCKSFR  L  G  S  W D+  +Y +       R+ +GKSVG TAL+L+ S +  TCVSCG          +K+  + + LCG C +   FR+ +L   C  +FLD     +   +  +K GRA+ +L + ++  A   YPNG L+ +M+KR  +     +RK + ++KRI D    F  ++    SR+D VL+DQ  L++ V+ F +   + GD  +N++ +     + A+   DF  +LTYM+K+ LL+   +       H  +P+ IF+ +V  GLHFY+    +A + ++L  R  DV+ ++   +QR     E R+QL ++MC E+   Y   +F  F++   GNP   AR+ R  E+L  N         +  G     A R A+  VL  T G+P M R C+IDL
Sbjct:    5 LPDPILMHIFLHHQPKDYDTLRELKHVCKSFRSAL--GTRSVVWNDLYFRYCNECAPNTGRLRWGKSVGTTALMLRLSSMTATCVSCGFQGRGFKMKPEKHPFYGVRLCGACVRLSPFRMESLTAMCQLFFLDRQHVLQGDTVTTIKIGRAFMLLFDKMKAEAERTYPNGLLKDKMDKREQKRILQSIRKIESQRKRIEDATNHFNVLVSCYSSRIDPVLQDQERLQEAVRYFSAISLLSGDFYDNKITSKTTPTLYAKKQLDFAELLTYMKKMGLLNREMQYADEDPVHAINPKYIFKIYVQNGLHFYDQVHQYAMAEQQLRARIQDVRTFINVNRQRLRSSTELRRQLCVSMCVEEGVDYCPIYFKDFVIYVVGNPCIQARRLRCFEFLTRNGHQEVVQKKISYGFSMSAAIRSASKYVLDQTNGFPVMSRACVIDL 441
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q6XM01_9PHYC1.710e-5833.03FirrV-1-B35 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:10944..12218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1275
Cds size1275
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.1982698-CDS-L-elsbetiae_contig101:10943..122181622815241.1982698-CDS-L-elsbetiae_contig101:10943..12218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 10944..12218 +
1691682790.6527512-CDS-L-elsbetiae_contig101:10943..122181691682790.6527512-CDS-L-elsbetiae_contig101:10943..12218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 10944..12218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.136.1prot_L-elsbetiae_contig101.136.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 10944..12218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.136.1

>prot_L-elsbetiae_contig101.136.1 ID=prot_L-elsbetiae_contig101.136.1|Name=mRNA_L-elsbetiae_contig101.136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=425bp
MYAQLAPPLLALIFEYHRAYQVKLLREVCKSFRDVLDDGGNSYWKDMLGK
YSSPLVKTRVIYGKSVGVTALILKESFLLKTCVSCGLWFNTKKNRLHDIL
LCGRCSKKQVFRIVNLRKACTNYFLDYNVQKENHILVKLKKGRAYEVLLN
HVRNVALAKYPNGDLEKRMNKRFSRLFRTELRKQKEKKKRIVDIGYKFCD
ILWETPSRVDKVLRDQNVLKDLVQKFGSRHDVFGDTLENRVRALRKCEVA
ARHLYDFGAMLTYMRKIHLLDDCYEVTSGHRCHPRNIFRHHVNEGLHFYE
LSRLHADSREELLRRSSDVQIYLVQKKQREEGRKQLAIAMCAEDSTTYQA
DFFNSFILQGEGNPVFLARQQREKEYLQHNNLAWETGNFLLSGHDQENAQ
RLATNNVLQYTKGYPPMMRTCIIDL
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mRNA from alignment at L-elsbetiae_contig101:10944..12218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.136.1 ID=mRNA_L-elsbetiae_contig101.136.1|Name=mRNA_L-elsbetiae_contig101.136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1275bp|location=Sequence derived from alignment at L-elsbetiae_contig101:10944..12218+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGCACAGTTAGCACCACCGCTTTTGGCGCTGATCTTCGAGTATCA
CCGAGCATATCAAGTTAAACTTCTCCGAGAAGTTTGTAAGAGCTTCAGAG
ATGTCTTAGACGACGGTGGGAATAGCTACTGGAAGGACATGCTTGGGAAG
TATTCTTCACCCTTGGTTAAGACTAGAGTGATCTACGGGAAGTCCGTCGG
TGTCACAGCTCTGATTTTAAAAGAATCGTTTTTGCTTAAGACATGTGTTT
CCTGCGGCCTTTGGTTCAACACGAAGAAAAATCGGTTACACGACATTCTG
TTATGTGGTAGATGTTCGAAGAAGCAAGTTTTCAGGATTGTGAATCTTCG
GAAAGCGTGTACCAACTACTTTTTAGATTACAACGTCCAAAAGGAAAATC
ATATCCTTGTGAAGTTGAAGAAAGGCAGAGCATACGAAGTTCTTCTTAAC
CACGTGAGAAACGTGGCATTAGCGAAATATCCGAATGGGGATCTCGAGAA
AAGGATGAATAAAAGATTCTCCAGGTTATTCAGGACCGAACTCCGAAAAC
AAAAAGAAAAGAAGAAAAGGATTGTAGACATAGGCTACAAATTCTGCGAC
ATACTGTGGGAGACTCCGTCGAGAGTCGACAAGGTTCTCCGAGATCAAAA
TGTCTTAAAAGACTTGGTACAGAAATTTGGATCACGTCATGACGTTTTTG
GGGATACGCTGGAGAACAGAGTCAGAGCTCTGCGTAAATGTGAGGTGGCG
GCACGACACTTGTACGATTTTGGCGCCATGCTTACCTACATGAGAAAAAT
TCACCTCTTGGATGACTGCTACGAGGTCACATCTGGGCACCGGTGCCATC
CAAGAAATATCTTCCGCCACCACGTCAACGAAGGACTACATTTCTACGAA
CTGTCCCGCCTTCACGCCGACTCCAGGGAAGAACTTCTGCGTCGCTCCTC
CGATGTACAAATATATCTTGTACAAAAAAAACAGCGAGAGGAAGGACGAA
AACAACTTGCCATCGCAATGTGTGCGGAGGATTCTACCACCTACCAAGCC
GACTTTTTCAATAGTTTTATTCTTCAAGGGGAGGGAAATCCGGTATTTTT
GGCCAGGCAACAACGAGAGAAGGAGTATCTCCAACACAATAATTTGGCAT
GGGAGACCGGTAATTTCTTATTGTCGGGGCACGACCAGGAAAATGCTCAA
AGATTGGCGACGAACAACGTTCTACAATACACGAAAGGGTACCCCCCTAT
GATGAGAACATGTATCATCGATCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:10944..12218+

>mRNA_L-elsbetiae_contig101.136.1 ID=mRNA_L-elsbetiae_contig101.136.1|Name=mRNA_L-elsbetiae_contig101.136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2550bp|location=Sequence derived from alignment at L-elsbetiae_contig101:10944..12218+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGCACAGTTAGCACCACCGCTTTTGGCGCTGATCTTCGAGTATCA
CCGAGCATATCAAGTTAAACTTCTCCGAGAAGTTTGTAAGAGCTTCAGAG
ATGTCTTAGACGACGGTGGGAATAGCTACTGGAAGGACATGCTTGGGAAG
TATTCTTCACCCTTGGTTAAGACTAGAGTGATCTACGGGAAGTCCGTCGG
TGTCACAGCTCTGATTTTAAAAGAATCGTTTTTGCTTAAGACATGTGTTT
CCTGCGGCCTTTGGTTCAACACGAAGAAAAATCGGTTACACGACATTCTG
TTATGTGGTAGATGTTCGAAGAAGCAAGTTTTCAGGATTGTGAATCTTCG
GAAAGCGTGTACCAACTACTTTTTAGATTACAACGTCCAAAAGGAAAATC
ATATCCTTGTGAAGTTGAAGAAAGGCAGAGCATACGAAGTTCTTCTTAAC
CACGTGAGAAACGTGGCATTAGCGAAATATCCGAATGGGGATCTCGAGAA
AAGGATGAATAAAAGATTCTCCAGGTTATTCAGGACCGAACTCCGAAAAC
AAAAAGAAAAGAAGAAAAGGATTGTAGACATAGGCTACAAATTCTGCGAC
ATACTGTGGGAGACTCCGTCGAGAGTCGACAAGGTTCTCCGAGATCAAAA
TGTCTTAAAAGACTTGGTACAGAAATTTGGATCACGTCATGACGTTTTTG
GGGATACGCTGGAGAACAGAGTCAGAGCTCTGCGTAAATGTGAGGTGGCG
GCACGACACTTGTACGATTTTGGCGCCATGCTTACCTACATGAGAAAAAT
TCACCTCTTGGATGACTGCTACGAGGTCACATCTGGGCACCGGTGCCATC
CAAGAAATATCTTCCGCCACCACGTCAACGAAGGACTACATTTCTACGAA
CTGTCCCGCCTTCACGCCGACTCCAGGGAAGAACTTCTGCGTCGCTCCTC
CGATGTACAAATATATCTTGTACAAAAAAAACAGCGAGAGGAAGGACGAA
AACAACTTGCCATCGCAATGTGTGCGGAGGATTCTACCACCTACCAAGCC
GACTTTTTCAATAGTTTTATTCTTCAAGGGGAGGGAAATCCGGTATTTTT
GGCCAGGCAACAACGAGAGAAGGAGTATCTCCAACACAATAATTTGGCAT
GGGAGACCGGTAATTTCTTATTGTCGGGGCACGACCAGGAAAATGCTCAA
AGATTGGCGACGAACAACGTTCTACAATACACGAAAGGGTACCCCCCTAT
GATGAGAACATGTATCATCGATCTTATGTACGCACAGTTAGCACCACCGC
TTTTGGCGCTGATCTTCGAGTATCACCGAGCATATCAAGTTAAACTTCTC
CGAGAAGTTTGTAAGAGCTTCAGAGATGTCTTAGACGACGGTGGGAATAG
CTACTGGAAGGACATGCTTGGGAAGTATTCTTCACCCTTGGTTAAGACTA
GAGTGATCTACGGGAAGTCCGTCGGTGTCACAGCTCTGATTTTAAAAGAA
TCGTTTTTGCTTAAGACATGTGTTTCCTGCGGCCTTTGGTTCAACACGAA
GAAAAATCGGTTACACGACATTCTGTTATGTGGTAGATGTTCGAAGAAGC
AAGTTTTCAGGATTGTGAATCTTCGGAAAGCGTGTACCAACTACTTTTTA
GATTACAACGTCCAAAAGGAAAATCATATCCTTGTGAAGTTGAAGAAAGG
CAGAGCATACGAAGTTCTTCTTAACCACGTGAGAAACGTGGCATTAGCGA
AATATCCGAATGGGGATCTCGAGAAAAGGATGAATAAAAGATTCTCCAGG
TTATTCAGGACCGAACTCCGAAAACAAAAAGAAAAGAAGAAAAGGATTGT
AGACATAGGCTACAAATTCTGCGACATACTGTGGGAGACTCCGTCGAGAG
TCGACAAGGTTCTCCGAGATCAAAATGTCTTAAAAGACTTGGTACAGAAA
TTTGGATCACGTCATGACGTTTTTGGGGATACGCTGGAGAACAGAGTCAG
AGCTCTGCGTAAATGTGAGGTGGCGGCACGACACTTGTACGATTTTGGCG
CCATGCTTACCTACATGAGAAAAATTCACCTCTTGGATGACTGCTACGAG
GTCACATCTGGGCACCGGTGCCATCCAAGAAATATCTTCCGCCACCACGT
CAACGAAGGACTACATTTCTACGAACTGTCCCGCCTTCACGCCGACTCCA
GGGAAGAACTTCTGCGTCGCTCCTCCGATGTACAAATATATCTTGTACAA
AAAAAACAGCGAGAGGAAGGACGAAAACAACTTGCCATCGCAATGTGTGC
GGAGGATTCTACCACCTACCAAGCCGACTTTTTCAATAGTTTTATTCTTC
AAGGGGAGGGAAATCCGGTATTTTTGGCCAGGCAACAACGAGAGAAGGAG
TATCTCCAACACAATAATTTGGCATGGGAGACCGGTAATTTCTTATTGTC
GGGGCACGACCAGGAAAATGCTCAAAGATTGGCGACGAACAACGTTCTAC
AATACACGAAAGGGTACCCCCCTATGATGAGAACATGTATCATCGATCTT
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