mRNA_L-elsbetiae_contig101.133.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.133.1
Unique NamemRNA_L-elsbetiae_contig101.133.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig101.133.1 vs. uniprot
Match: B5LWC8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC8_9PHYC)

HSP 1 Score: 134 bits (336), Expect = 3.470e-38
Identity = 67/109 (61.47%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:   34 YWKVSCVILTSIVVTSYVSSKCFESQRLPRSHILKISEMLRKAAEHSIRASQDTQAVAVFSDTCQAKAYVDLVADMLSPAQVRSIANIDILEMKEFISQQHQKATETLL 360
            YWK SC +L ++   S +S KC+E+ RLPR H+LKI+E+LR AAEHS+RASQD++   VF DTCQAK  +DLVA +L+  QVR IANIDI E+KEFI+ QH KAT TLL
Sbjct:    3 YWKASCTLLLTLAAVSALSRKCYETSRLPRRHVLKITELLRTAAEHSLRASQDSRPENVFHDTCQAKVNIDLVAQLLTREQVRHIANIDIDEIKEFIATQHLKATATLL 111
[Close]
BLAST of mRNA_L-elsbetiae_contig101.133.1 vs. uniprot
Match: Q6XM04_9PHYC (FirrV-1-B32 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM04_9PHYC)

HSP 1 Score: 121 bits (303), Expect = 2.920e-33
Identity = 57/109 (52.29%), Postives = 81/109 (74.31%), Query Frame = 1 
Query:    1 MERLNPQVSTAYWKVSCVILTSIVVTSYVSSKCFESQRLPRSHILKISEMLRKAAEHSIRASQDTQAVAVFSDTCQAKAYVDLVADMLSPAQVRSIANIDILEMKEFIS 327
            MERLNPQ S  YWK S ++LTS+V+TS++S KCF+  +LPR H+LKISE+LR+  EHSI ASQ       + DTC+AK Y++LV+++L+P Q+  ++ IDI E+K  I+
Sbjct:    1 MERLNPQASMTYWKASILLLTSVVLTSWISKKCFQQSKLPRHHLLKISELLRRGIEHSIAASQSP--TTRYRDTCKAKIYINLVSELLTPEQILDLSGIDIHELKHLIT 107
[Close]
BLAST of mRNA_L-elsbetiae_contig101.133.1 vs. uniprot
Match: Q8QKV6_ESV1K (EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K)

HSP 1 Score: 116 bits (290), Expect = 3.700e-31
Identity = 59/121 (48.76%), Postives = 87/121 (71.90%), Query Frame = 1 
Query:    1 MERLNPQVSTAYWKVSCVILTSIVVTSYVSSKCFESQRLPRSHILKISEMLRKAAEHSIRASQDTQAVAVFSDTCQAKAYVDLVADMLSPAQVRSIANIDILEMKEFISQQHQKATETLLQ 363
            M+R+N + + AYWK+S +++  + VTSY+S +  ES +LPR HILK SE+LR+AA  SI+++QD   V  F D+ +A   V++V++ L+P QV+ I N+DI EMKEFIS+QH  AT  L+Q
Sbjct:    1 MDRMNQRSAMAYWKLSTIVVVFVGVTSYLSVRAHESSKLPREHILKYSELLREAARASIQSTQDQHPVQSFIDSSKAMCAVNIVSEFLTPHQVKHIMNVDIGEMKEFISKQHDDATSALVQ 121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWC8_9PHYC3.470e-3861.47Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM04_9PHYC2.920e-3352.29FirrV-1-B32 n=1 Tax=Feldmannia irregularis virus a... [more]
Q8QKV6_ESV1K3.700e-3148.76EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K[more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:3348..3710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionEsV-1-67
Ec32 orthologEc-06_006130.1
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.0700734-CDS-L-elsbetiae_contig101:3347..37101622815241.0700734-CDS-L-elsbetiae_contig101:3347..3710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 3348..3710 +
1691682790.5983596-CDS-L-elsbetiae_contig101:3347..37101691682790.5983596-CDS-L-elsbetiae_contig101:3347..3710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 3348..3710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.133.1prot_L-elsbetiae_contig101.133.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 3348..3710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.133.1

>prot_L-elsbetiae_contig101.133.1 ID=prot_L-elsbetiae_contig101.133.1|Name=mRNA_L-elsbetiae_contig101.133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MERLNPQVSTAYWKVSCVILTSIVVTSYVSSKCFESQRLPRSHILKISEM
LRKAAEHSIRASQDTQAVAVFSDTCQAKAYVDLVADMLSPAQVRSIANID
ILEMKEFISQQHQKATETLLQ
back to top

mRNA from alignment at L-elsbetiae_contig101:3348..3710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.133.1 ID=mRNA_L-elsbetiae_contig101.133.1|Name=mRNA_L-elsbetiae_contig101.133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=363bp|location=Sequence derived from alignment at L-elsbetiae_contig101:3348..3710+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAGATTGAACCCACAAGTTTCGACCGCCTATTGGAAAGTGTCTTG
CGTTATTCTGACGTCAATCGTCGTGACGAGCTACGTGTCCTCGAAGTGTT
TCGAATCTCAAAGATTACCTCGCTCACATATTTTGAAAATATCTGAAATG
TTACGAAAAGCTGCTGAGCACTCCATTCGGGCCTCACAGGACACACAGGC
GGTCGCGGTTTTTTCAGATACGTGCCAGGCGAAGGCCTACGTCGACCTCG
TTGCGGACATGCTGAGTCCAGCCCAAGTGCGGAGCATTGCCAACATTGAC
ATTTTGGAGATGAAAGAATTCATTTCTCAGCAACATCAAAAGGCAACCGA
GACTCTTCTACAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig101:3348..3710+

>mRNA_L-elsbetiae_contig101.133.1 ID=mRNA_L-elsbetiae_contig101.133.1|Name=mRNA_L-elsbetiae_contig101.133.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig101:3348..3710+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAGATTGAACCCACAAGTTTCGACCGCCTATTGGAAAGTGTCTTG
CGTTATTCTGACGTCAATCGTCGTGACGAGCTACGTGTCCTCGAAGTGTT
TCGAATCTCAAAGATTACCTCGCTCACATATTTTGAAAATATCTGAAATG
TTACGAAAAGCTGCTGAGCACTCCATTCGGGCCTCACAGGACACACAGGC
GGTCGCGGTTTTTTCAGATACGTGCCAGGCGAAGGCCTACGTCGACCTCG
TTGCGGACATGCTGAGTCCAGCCCAAGTGCGGAGCATTGCCAACATTGAC
ATTTTGGAGATGAAAGAATTCATTTCTCAGCAACATCAAAAGGCAACCGA
GACTCTTCTACAGATGGAGAGATTGAACCCACAAGTTTCGACCGCCTATT
GGAAAGTGTCTTGCGTTATTCTGACGTCAATCGTCGTGACGAGCTACGTG
TCCTCGAAGTGTTTCGAATCTCAAAGATTACCTCGCTCACATATTTTGAA
AATATCTGAAATGTTACGAAAAGCTGCTGAGCACTCCATTCGGGCCTCAC
AGGACACACAGGCGGTCGCGGTTTTTTCAGATACGTGCCAGGCGAAGGCC
TACGTCGACCTCGTTGCGGACATGCTGAGTCCAGCCCAAGTGCGGAGCAT
TGCCAACATTGACATTTTGGAGATGAAAGAATTCATTTCTCAGCAACATC
AAAAGGCAACCGAGACTCTTCTACAG
back to top