mRNA_L-elsbetiae_contig1009.129.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1009.129.1
Unique NamemRNA_L-elsbetiae_contig1009.129.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1009.129.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.420e-8
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    4 LLLALFIKPLFAQGDDGRISIRSRHRRTVLRNITCTIGVV-AVQLAEAVVVYTVVYHKGHTEDVERSADVAAVTQVFLTLCFTEITIPLGFAS 279
            LLL LF++PL  + + G  S  + +R  V++NITCTI VV A  +   VV+  ++     +      AD+  +   F+TLC TEI +PLGF+S
Sbjct:  227 LLLILFVRPLLVRLE-GSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSNTASLFADITPLVNQFVTLCLTEIALPLGFSS 318
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BLAST of mRNA_L-elsbetiae_contig1009.129.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.140e-6
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    4 LLLALFIKPLFAQGDDGRI-SIRSRHRRTVLRNITCTIGVV-AVQLAEAVVVYTVVYHKGHTEDVERSADVAAVTQVFLTLCFTEITIPLGFAS 279
            LLLA+F+KPL      G I S  + +RR V+RN+ CTIG+     +   +VV   +     +    + AD+     +F+TLC TE+++PLGF+S
Sbjct:   75 LLLAMFVKPLMI--PQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSS 166
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BLAST of mRNA_L-elsbetiae_contig1009.129.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.300e-5
Identity = 33/93 (35.48%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    4 LLLALFIKPLFAQGDDGRISIRSRHRRTVLRNITCTIGVV-AVQLAEAVVVYTVVYHKGHTEDVERSADVAAVTQVFLTLCFTEITIPLGFAS 279
            LLLA+F+KPL       + S  + +RR V+RN+ CTI +     +   +VV   +     +    + AD+     +F+TLC TEI++PLGF+S
Sbjct:  206 LLLAMFVKPLMIPQGHTQ-SGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSS 297
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BLAST of mRNA_L-elsbetiae_contig1009.129.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.420e-5
Identity = 32/93 (34.41%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    4 LLLALFIKPLFAQGDDGRISIRSRHRRTVLRNITCTIGVV-AVQLAEAVVVYTVVYHKGHTEDVERSADVAAVTQVFLTLCFTEITIPLGFAS 279
            LLLA+F+KPL       + S  + +RR V+RN+ CTI +     +   +VV   +     +    + AD+     +F+TLC TE+++PLGF+S
Sbjct:  105 LLLAIFVKPLMIPQGHTQ-SGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTAPGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSS 196
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1009.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JY97_9PHAE1.420e-838.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN45_ECTSI2.140e-637.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPA3_9PHAE1.300e-535.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K249_9PHAE1.420e-534.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1009contigL-elsbetiae_contig1009:12001..13539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003280.1
Exons3
Model size384
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1009.129.1prot_L-elsbetiae_contig1009.129.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1009 12003..13539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815240.7756917-CDS-L-elsbetiae_contig1009:12002..121311622815240.7756917-CDS-L-elsbetiae_contig1009:12002..12131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1009 12003..12131 -
1691682790.4161272-CDS-L-elsbetiae_contig1009:12002..121311691682790.4161272-CDS-L-elsbetiae_contig1009:12002..12131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1009 12003..12131 -
1622815240.7889185-CDS-L-elsbetiae_contig1009:12848..129111622815240.7889185-CDS-L-elsbetiae_contig1009:12848..12911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1009 12849..12911 -
1691682790.4250987-CDS-L-elsbetiae_contig1009:12848..129111691682790.4250987-CDS-L-elsbetiae_contig1009:12848..12911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1009 12849..12911 -
1622815240.8025386-CDS-L-elsbetiae_contig1009:13350..135391622815240.8025386-CDS-L-elsbetiae_contig1009:13350..13539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1009 13351..13539 -
1691682790.4325557-CDS-L-elsbetiae_contig1009:13350..135391691682790.4325557-CDS-L-elsbetiae_contig1009:13350..13539Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1009 13351..13539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1009.129.1

>prot_L-elsbetiae_contig1009.129.1 ID=prot_L-elsbetiae_contig1009.129.1|Name=mRNA_L-elsbetiae_contig1009.129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
LLLLALFIKPLFAQGDDGRISIRSRHRRTVLRNITCTIGVVAVQLAEAVV
VYTVVYHKGHTEDVERSADVAAVTQVFLTLCFTEITIPLGFASFFAWALK
KWRPKKDGSGESGQRSCMEVSRNSQTT
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mRNA from alignment at L-elsbetiae_contig1009:12001..13539-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1009.129.1 ID=mRNA_L-elsbetiae_contig1009.129.1|Name=mRNA_L-elsbetiae_contig1009.129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1539bp|location=Sequence derived from alignment at L-elsbetiae_contig1009:12001..13539- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTATTACTGGCGCTCTTCATCAAACCACTATTCGCCCAAGGCGACGA
CGGTCGTATTTCGATCCGTTCCAGACACCGTCGCACAGTGCTTCGAAACA
TTACTTGCACTATCGGAGTGGTGGCGGTGCAGCTAGCAGAGGCGGTTGTG
GTTTACACTGTCGTCTATCACAAGGGCCACACAGAAGATGTGAGACTGGA
TTGATGTAGCAAGCGTTTTGTCTAGATCCAACGAGCCGTTTTTACTTCGA
GCGCAGCAGTGATGTTGTATCAACGCTACATACGGTCGCGCACAGAGATA
TGGGTATGTCTCGTAAAGGTCTAGATGTTGATTCTAGAGTAGATATGGTG
GGCATGGTACCGTGCGGAACTACGAAGGGCCTTCTGGAGAACATTTCGTC
CGGAATATAAACCGCCCGTCAGATCACCACTTGGACGCCCCAAGTCATGA
TGCGCGCGTATATATGCATGTTGCCTACTCTTCTTTCAAGCCGGCGGCCA
TCATCTACATATATCTATCCCCGTACGCTGGCATCACCATAGACTAGATA
TATGCTCGCTTTCTAGTCTGCCACCGAATGGCGTCTGGCTCTATCGATCA
CGCCAACAAGAGTGCTCTGTACCGGCAGGTGGAACGAAGCGCCGATGTTG
CTGCGGTTACCCAAGTTTTCTTGACATTGTGCTTCACAGAGGTAAGCCCT
TTCACCGTTCACAAGCCATGCCACGGTAGAGGGGTGCACAAAGCGTGTCT
TCACTTTTAGATGTTTGGAGAGCCCTGTACCCCATCCAAAAACTACCTTA
CTTGTTAAAACTACCTTCGAGCGTAGGATGAAAACCCGTCACAATAGGCG
TTCCGATGAGCAAGTGATATCTTGACCTCTGGATATAGTCTAGACAAATA
TGTTTATGAACTACTGTGATGATTACTTTTTTTTGTATGACCGTGGGTTC
ACAAGCACAACCGCCCGAGCTGTCATGCTTGGTGTCATTTGCCGCCATTC
TACGGTGAAAGTAGAGAGATGAGCACCAGATATGTAGCTCTAGATAGATA
TATCCCGAAGGGGGTCTATCTGTATTTTTGAAGTCAATGTCACTCTTCTA
TTATTCTTGTCGACGCCCAAGCGCCATCATCAGCGATCCGCTGCAAAAAC
AAAACAATACAAATTATTTTCAGACTAGACTAGATTAACTGCGCACATGT
CCTAATCTAGATAGGTACAGCGCTTGCACCGCAAACTACAGCAAGCAGTA
TTCCTTCAACGCACGCCGCCAACCAACACGAGACTATGTAGACTACATAG
TAGATAGACTACATAAGTAGATGGGTAACTACCATTTAATGCAAGCAATC
ACCCAGACTGAGGTCTCGCGGCCGTTTTCTCGATGTTTTCCGACCTCCCT
CTGCGCAGATAACCATCCCTCTGGGTTTCGCCAGTTTTTTCGCCTGGGCA
CTTAAAAAATGGCGACCGAAAAAAGACGGCAGCGGGGAGTCCGGCCAAAG
GTCGTGCATGGAAGTGAGCAGAAATAGCCAAACAACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1009:12001..13539-

>mRNA_L-elsbetiae_contig1009.129.1 ID=mRNA_L-elsbetiae_contig1009.129.1|Name=mRNA_L-elsbetiae_contig1009.129.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1009:12001..13539- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTATTACTGGCGCTCTTCATCAAACCACTATTCGCCCAAGGCGACGA
CGGTCGTATTTCGATCCGTTCCAGACACCGTCGCACAGTGCTTCGAAACA
TTACTTGCACTATCGGAGTGGTGGCGGTGCAGCTAGCAGAGGCGGTTGTG
GTTTACACTGTCGTCTATCACAAGGGCCACACAGAAGATCTGCTATTACT
GGCGCTCTTCATCAAACCACTATTCGCCCAAGGCGACGACGGTCGTATTT
CGATCCGTTCCAGACACCGTCGCACAGTGCTTCGAAACATTACTTGCACT
ATCGGAGTGGTGGCGGTGCAGCTAGCAGAGGCGGTTGTGGTTTACACTGT
CGTCTATCACAAGGGCCACACAGAAGATGTGGAACGAAGCGCCGATGTTG
CTGCGGTTACCCAAGTTTTCTTGACATTGTGCTTCACAGAGGTGGAACGA
AGCGCCGATGTTGCTGCGGTTACCCAAGTTTTCTTGACATTGTGCTTCAC
AGAGATAACCATCCCTCTGGGTTTCGCCAGTTTTTTCGCCTGGGCACTTA
AAAAATGGCGACCGAAAAAAGACGGCAGCGGGGAGTCCGGCCAAAGGTCG
TGCATGGAAGTGAGCAGAAATAGCCAAACAACCATAACCATCCCTCTGGG
TTTCGCCAGTTTTTTCGCCTGGGCACTTAAAAAATGGCGACCGAAAAAAG
ACGGCAGCGGGGAGTCCGGCCAAAGGTCGTGCATGGAAGTGAGCAGAAAT
AGCCAAACAACC
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