mRNA_L-elsbetiae_contig10065.110.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10065.110.1
Unique NamemRNA_L-elsbetiae_contig10065.110.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10065.110.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.880e-13
Identity = 50/111 (45.05%), Postives = 59/111 (53.15%), Query Frame = 2 
Query:   20 DEWQEAVAGGDAEKLSGLVLLATGSKPETAMSLLRSCLRLLEGKTGTTPSQPDAATATTSANGHAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPVLFTVENAQLLQPKG 352
            DEW  AVAGGDAEKLS LVL + GS  E A+S+L+SC+ +LE K         AAT TT ANG                    XXX        +P L T+EN QLLQP+G
Sbjct:    2 DEWNSAVAGGDAEKLSDLVLSSAGSSTEAALSILKSCVTILEKKQA-------AATGTTPANG----GPADGSPKSDVTGTTTXXXDSNGSAPSSPPLLTLENVQLLQPRG 101
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BLAST of mRNA_L-elsbetiae_contig10065.110.1 vs. uniprot
Match: A0A6H5KI43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI43_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.720e-7
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:   20 DEWQEAVAGGDAEKLSGLVLLATGSKPETAMSLLRSCLRLLEGKTG 157
            DEW+ AVAGGDA KLS LVLL+ GS  + A+S+L+SC+ +LE   G
Sbjct:    2 DEWKSAVAGGDAAKLSDLVLLSAGSSTDAALSILKSCVTMLEKTQG 47
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10065.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH98_ECTSI4.880e-1345.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI43_9PHAE1.720e-758.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10065contigL-elsbetiae_contig10065:1219..5021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size354
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10065.110.1prot_L-elsbetiae_contig10065.110.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10065 1219..5008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.1768315-CDS-L-elsbetiae_contig10065:1218..13911622815239.1768315-CDS-L-elsbetiae_contig10065:1218..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10065 1219..1391 -
1691682789.3903978-CDS-L-elsbetiae_contig10065:1218..13911691682789.3903978-CDS-L-elsbetiae_contig10065:1218..1391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10065 1219..1391 -
1622815239.1870334-CDS-L-elsbetiae_contig10065:4842..50081622815239.1870334-CDS-L-elsbetiae_contig10065:4842..5008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10065 4843..5008 -
1691682789.3994045-CDS-L-elsbetiae_contig10065:4842..50081691682789.3994045-CDS-L-elsbetiae_contig10065:4842..5008Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10065 4843..5008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.1967018-UTR-L-elsbetiae_contig10065:5008..50211622815239.1967018-UTR-L-elsbetiae_contig10065:5008..5021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10065 5009..5021 -
1691682789.4091227-UTR-L-elsbetiae_contig10065:5008..50211691682789.4091227-UTR-L-elsbetiae_contig10065:5008..5021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10065 5009..5021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10065.110.1

>prot_L-elsbetiae_contig10065.110.1 ID=prot_L-elsbetiae_contig10065.110.1|Name=mRNA_L-elsbetiae_contig10065.110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MADEWQEAVAGGDAEKLSGLVLLATGSKPETAMSLLRSCLRLLEGKTGTT
PSQPDAATATTSANGHAPAPGSTSSPGRDNSSGSASSSSSSSSSSSAPVL
FTVENAQLLQPKG
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mRNA from alignment at L-elsbetiae_contig10065:1219..5021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10065.110.1 ID=mRNA_L-elsbetiae_contig10065.110.1|Name=mRNA_L-elsbetiae_contig10065.110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3803bp|location=Sequence derived from alignment at L-elsbetiae_contig10065:1219..5021- (Laminarionema elsbetiae ELsaHSoW15)
CACGTTGTTCACGATGGCAGACGAGTGGCAGGAAGCGGTAGCGGGTGGTG
ATGCGGAGAAGCTTTCAGGTCTCGTCTTGTTGGCCACGGGCTCGAAGCCG
GAGACAGCGATGTCTCTTCTTCGGAGCTGTTTGCGTCTGCTGGAGGGGAA
AACGGGCACCACTCCCTCGCAGCCCGACGGTGCGTGGGTGCTCTCTCGTT
GATGTAGCGACTGCAGGTAGCGACCTTTTGGCGTTGTCTAGGAACTGACC
AGTGTACGCTATGTTTGAAATGGGTTTTGGTGGAGCTGTTTTGGTGAGAG
ATTTTGTGCTACATACACACATGGTTTGGGGGGGAAAACATTTCAAATTT
CAAAATTCGGTTGATGAGAGCGCGCACCATTTTACATTTTACAGATGGTC
TATCTCGATTATCTCGATAACTGACCAGAGCTGTAACTGACTGCCTGTGT
TGTGTGTTATTTCGTGGTTTGTGCTCACATCAAGCGTGGCTTGGAGTGAG
AGAGGATTCAAAACATAAACACCGTGGGCTGCTGTAGTTTCTGTACAAAA
GTTGAGTCGAACACGGAAGCTATCTACCGGTATCTGTAGAAGTATGTATC
TACATACACAGACTGCTGTGTTTTGCTGTGTACATACAAGCAGTGTACAA
CAATACTAGTCGTAAGGTGTCAAACATAATATATGTAGACTATGCACATA
CACCACTTTGCATTCACGCAACGTTCAAAACCTCTTGCATCATTCACTCT
GCGACTTTTTTTTTTTTCTTCACATTTATTTCCAGTGCTTGATGGGCTCC
CCGTCACGAGGACATCTTGCCAGAGTACTGAACCGTGGTCGCACAGAAGG
ATTCCTTTCCCCAAGGCCCCCACTCCCCCCGTCTGCGGTGCTTGCCTACG
ATTTTTGTCGCGAGGAGGGTTCAGCCGTCCCTTTCCCTCGTCGACGGTGA
GGTCGAAAGTGTGTGTACTAGAAGTACATAATTTGCATAATTCTCTGCGC
ACAGGAACCCGCTTGCTAACGCTATCAGGTTCACCCCTCCACGTTCTACT
CTCTTCTATTCTTCTTCCGATTTTTTTTTTTTTTCTCGTCTGCCCATTAT
GTATTGGGTTTTTTTCGTCTGCCCCTCTGGCCCCCATCCTCCATTTCTAC
TCTAGCTAGACGTCCCAACCGGGGTCACATAGGAGGGGGGGGTTGGACCC
CCTCCTGCGGTGATTAAACCTCTCCCAGCGATGATCAGCATCAGTATTAG
TATTCCGTCAATGCACATGGCGTGGCCCACAGGAAGTGTAGCGTAGGGCA
GAGCTACTGCTGTAAGTGGTATGCTCTACTGTATGCAGAGACAAACTCAC
GTCTACATACCGTAGGTGACACAAGATACCATACCCCCTGGACGGGTTTT
CAAAGCTCGACTCCTCCCCAGCAAGAAGGGCTGGTGTTGGGACGATATAG
TCGAGAGTGGTCTGAAAATGTGCCGTTTGGTGCTGGCACCCTATTCGTTA
CGGAGTAGTAGGGCTCTAACATTCGGTCCAGGGGGTGTGGTATCTTGTGT
CACCTACGGTACCGCATGTGCGAAAAGTCGTTCCAGGGGAGTGACTATCT
GTGTAACCCCCTCCCCTCACCGTCCCAGACTGCAGGCGCAAAACCCGCAA
TCCGTTAGTCAACAAGTTGCCTGTTCCTGCATTTGTCAGCTGGGTGTTGT
GTGTGTGTGTGTTTGTGTGTGTGTGCTTTCCCTCCCATCATTGGCATATT
TGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACGACTAGCTAGGCGAC
ACAACCGGGGTCACACAGGAGGGGGGGGGGGGTTGATCCCTTCTGCGGTG
GTATCTTTGCGTGTATCTATCAATAGCATATGCTGCCTTAATTAATCGGT
GACGTCATCAAAAGGAAGATCCCGGTCGTTGGCTGCTAGTTTTTTTATGA
TGACCAGCACGGGTAACCGAAGTAATGTTTGGATGCCGGTTGCAGAATCA
AGGGCGATGGTAAAGAGCAGACTCAAGGCGCTGTTACTAAAGCGAGGAGT
GAGAGAGACGCGGCTCCTCGGCGGGGGCACAGCAGTGTGCGCACATGTAC
CAACGCGAACACAAAAAACATGCACGTAACCCCTAAATAGCACAACCTAA
CAAGTCACCAGGCGGTCATCGAACCGGTTTTTACAGAGAGACAAGCTATA
TACTTAGTATGCAACCAACGACAGCACCAAACCCCAGCAGTCAGTCAGTA
CATACAATACATACAATAATTTAGCATGTGACTCAAGATAACACACCCCT
GGGCCGATTTTGAAAGCTCAAGAGTAATATACTCCACAGCGAGAAGAAGA
GGGTCAGTCCCTTAAGGGCGGCGTTGGAAAAAATTCATCAAAAGTTACAT
AGCTGCCCGAATTACATGCTGTTTCACCTGACAGAGTTATGCAGGGGAGG
TGATGGACTTTTTCGTCATGTAGAAGTAGGTGTTTTTCTACTGGGCTGGA
CCAATATTACGTCACTATATGGAGTACCGTTAAAAGCGCATGGGAGTCGG
CTGTCTCTGTGGGTTAGGTTTCATTTTTGATTAACGGCTTTATTTTCAAG
AGTAATATACTCCACAGCGAGAACAAGAGGGTCAATTCCTTAAGGGGGCG
GCGTTGGAAATACCTCATCAAGAGCTGCCCGAAAACGGATCGTTTGGTAT
TATAACGGGCCTGGCCGGCGAGAACCCGGCGCGGAACCCCCCGGCTTTGT
TGGGGTACCAAGATAGTGGTGTTGGCTGTGTTCCAGTTTTGTTTTTACCT
CACATAGCGTGTAGAGGGGAGCGGAGGGCTCCAGATTCGATATCTGTTTT
ATTGTTGCTTTGCTGGCCCTTCGGGTCTATTTTATTTTTCGTGCACATAT
CTTTTCTTGGGTATAAGTTAGCCTGTGACCACGGGATTTGACCGCATCAA
GTGTTGGATTAGTACGGATATTTAGAGGTACTGGATGGAGAGATCGGAAC
GGTTTTTAATGTGAAGATAACATGCATACATGCATACATACATACATAAC
CACACTCGTTGTGGAGCAACCGTGGAGCAACCGTGGAGCAACCGAGCTTC
GAAAACCGGTCCGGTGTGTGTGTTATCTTGTGTCATAATATACGGTATGT
AAATGGTCTCTCACAACAGCCCCTACTATGCACTTCGTAGTAAACAACGG
CCCCTTCTGTCTGCGATTTGGTGACACGTCCCACGATGACTACGCTAGAG
TCTCTCACAACAGCCCCTACTATGGAGTACACAACTGTCCACGTTTTGGC
GACACCTCACGCGATGACCACGCTAGAGTAGAGTCTCTCACAACAGCCCC
TACTATGGAGTACACAACTGTCGACGTTTTGGCGACACCTCACGCGATGA
CCACGCTCGAGTAGAGTCTCTCACAACAGCCCCTACTATGGAGCACACAA
CTGTCCACGTTTTGGCGACACCTCACGCGATGACCACGCTCGAGTAGAGT
CTCTCACAACAGCCCCTACTATGGAGTACACAGCTGTCGACGTTTTGGCG
ACACCTCACGCGATGACCACGCTATGTACAGTCTCTCACAACAGCACCTG
CCGCTTCCTTTTGGTCTATCCACCGTCCAGCTGCGACAGCGACGACGTCT
GCTAACGGCCACGCCCCTGCCCCCGGCAGTACCAGCAGCCCTGGCAGGGA
CAACAGCAGCGGCAGCGCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGCCCCTGTGCTGTTCACCGTGGAAAACGCCCAGCTGCTGCAACCCAAG
GGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10065:1219..5021-

>mRNA_L-elsbetiae_contig10065.110.1 ID=mRNA_L-elsbetiae_contig10065.110.1|Name=mRNA_L-elsbetiae_contig10065.110.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig10065:1219..5021- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGACGAGTGGCAGGAAGCGGTAGCGGGTGGTGATGCGGAGAAGCT
TTCAGGTCTCGTCTTGTTGGCCACGGGCTCGAAGCCGGAGACAGCGATGT
CTCTTCTTCGGAGCTGTTTGCGTCTGCTGGAGGGGAAAACGGGCACCACT
CCCTCGCAGCCCGACGATGGCAGACGAGTGGCAGGAAGCGGTAGCGGGTG
GTGATGCGGAGAAGCTTTCAGGTCTCGTCTTGTTGGCCACGGGCTCGAAG
CCGGAGACAGCGATGTCTCTTCTTCGGAGCTGTTTGCGTCTGCTGGAGGG
GAAAACGGGCACCACTCCCTCGCAGCCCGACGCTGCGACAGCGACGACGT
CTGCTAACGGCCACGCCCCTGCCCCCGGCAGTACCAGCAGCCCTGGCAGG
GACAACAGCAGCGGCAGCGCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCGCCCCTGTGCTGTTCACCGTGGAAAACGCCCAGCTGCTGCAACCCA
AGGGCCTGCGACAGCGACGACGTCTGCTAACGGCCACGCCCCTGCCCCCG
GCAGTACCAGCAGCCCTGGCAGGGACAACAGCAGCGGCAGCGCTAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCGCCCCTGTGCTGTTCACCGTGGA
AAACGCCCAGCTGCTGCAACCCAAGGGC
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