mRNA_L-elsbetiae_contig1006.105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1006.105.1
Unique NamemRNA_L-elsbetiae_contig1006.105.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 4.670e-24
Identity = 54/85 (63.53%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:  223 IGGDEPLDRDEDGEADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPCPGTTPTP 477
            +G D  +D DE      VC   LTD Q   LA+YDNGGK VVCDP+CLD   D LHCNYFGLGQICRGCG CS C PCPG TP P
Sbjct: 1303 LGADGAVDDDECS----VC-SNLTDEQVAVLASYDNGGKQVVCDPSCLDGVTDPLHCNYFGLGQICRGCGECSLCEPCPGATPAP 1382
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BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.390e-20
Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:  286 ELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPCP 459
            +++ AQEEALA YD GGK++VCDPTCL  D+   HCNYFGLGQ+CRGCG+CS+C PCP
Sbjct:  322 DISPAQEEALAMYDGGGKVIVCDPTCLGGDIS--HCNYFGLGQLCRGCGSCSECVPCP 377
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BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.650e-20
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  262 EADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPCP 459
            EA+     +++ AQEEALA YD GGK++VCDPTCL  D+   HCNYFGLGQ+CRGCG+CS C PCP
Sbjct:  349 EAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGEDIS--HCNYFGLGQLCRGCGSCSGCDPCP 412
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BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.340e-19
Identity = 47/73 (64.38%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  223 IGGDEPLDRDEDGEADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCS 441
            +G D  +D DE      VC   LTD Q   LA+YDNGGK VVCDPTCLD   D LHCNYFGLGQICRGCG CS
Sbjct:    4 LGADGAVDDDECS----VC-SNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 71
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BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.710e-18
Identity = 47/73 (64.38%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:  223 IGGDEPLDRDEDGEADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCS 441
            +G D  +D DE      VC   LTD Q   LA+YDNGGK VVCDPTCLD   D LHCNYFGLGQICRGCG CS
Sbjct:  420 LGADGAVDDDECS----VC-SNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 487
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BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.510e-11
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:  220 DIGGDEPLDRDEDGE---ADPVCDC----ELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPC 456
            D G D  +D D  G+   AD   DC     L++ Q  ALA +  G K VVCD  CLD  VD L C+YFGLGQICRGCG C  C  C
Sbjct: 1156 DAGVDVEVDMDAYGDGADADTTSDCAACSNLSEVQMLALAAHPGGAKRVVCDSDCLDG-VDVLDCDYFGLGQICRGCGDCDGCEAC 1240
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FTU6_ECTSI4.670e-2463.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTW1_9PHAE1.390e-2068.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4W7_ECTSI2.650e-2063.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V0_9PHAE4.340e-1964.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L314_9PHAE2.710e-1864.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI25_ECTSI1.510e-1150.00Mucin 17-like protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1006contigL-elsbetiae_contig1006:13602..15448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue2.4e-22
Seed eggNOG ortholog2880.D7FTU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size611
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1006.105.1prot_L-elsbetiae_contig1006.105.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1006 13602..15448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.8069444-CDS-L-elsbetiae_contig1006:13601..138131622815238.8069444-CDS-L-elsbetiae_contig1006:13601..13813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1006 13602..13813 -
1691682789.1721141-CDS-L-elsbetiae_contig1006:13601..138131691682789.1721141-CDS-L-elsbetiae_contig1006:13601..13813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1006 13602..13813 -
1622815238.820802-CDS-L-elsbetiae_contig1006:14771..149341622815238.820802-CDS-L-elsbetiae_contig1006:14771..14934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1006 14772..14934 -
1691682789.185942-CDS-L-elsbetiae_contig1006:14771..149341691682789.185942-CDS-L-elsbetiae_contig1006:14771..14934Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1006 14772..14934 -
1622815238.8323338-CDS-L-elsbetiae_contig1006:15214..154481622815238.8323338-CDS-L-elsbetiae_contig1006:15214..15448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1006 15215..15448 -
1691682789.1973875-CDS-L-elsbetiae_contig1006:15214..154481691682789.1973875-CDS-L-elsbetiae_contig1006:15214..15448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1006 15215..15448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1006.105.1

>prot_L-elsbetiae_contig1006.105.1 ID=prot_L-elsbetiae_contig1006.105.1|Name=mRNA_L-elsbetiae_contig1006.105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
VTPVTPAPVTPETPAPTTAVTPAPVTPGPVTPVTPAPVTPKTPAPTTAVN
PAPVTPAPVIPVTPAPTTAFEEPDIGGDEPLDRDEDGEADPVCDCELTDA
QEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCR
PCPGTTPTPTPEPATPEPVTPEPPTPEPATPEPATPEPATPEPATPEPVT
AEP
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mRNA from alignment at L-elsbetiae_contig1006:13602..15448-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1006.105.1 ID=mRNA_L-elsbetiae_contig1006.105.1|Name=mRNA_L-elsbetiae_contig1006.105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1847bp|location=Sequence derived from alignment at L-elsbetiae_contig1006:13602..15448- (Laminarionema elsbetiae ELsaHSoW15)
GTGACCCCCGTGACCCCTGCACCTGTCACCCCTGAGACTCCTGCACCCAC
CACCGCCGTGACTCCAGCGCCCGTGACCCCTGGGCCCGTGACCCCCGTGA
CCCCTGCGCCTGTCACCCCTAAGACTCCTGCACCCACTACCGCCGTGAAT
CCAGCGCCGGTGACCCCAGCGCCCGTGATCCCCGTGACCCCCGCCCCTAC
GACGGCCTTCGAGGAGCCGGACATCGGTGGAGATGTGAGTCGGCGGACCG
ACAAAATAACGTTTTGTTCAGATGCTTGCTGCAGCCTGATTCGCTGGGGC
TATTCTTCCACTGTCACAAAACGCGGATTGCTACTAGAATCCTTGTTTCA
CTCTCAATCCTATGCGCGCATGAAGGCCGCTGTGGCATGTATGTGTACAT
ACACGATCTACGACAAAAATGCTTGGCGCAAATGTTTTTATTTTTGTTGT
ATTGTCTCGATGACCCGCCTCCGTATTTCGGTGCCTTGTTGTTTGCGTCG
CGCCTGCCGCTCAGGAGCCTCTCGACAGAGACGAAGACGGTGAAGCGGAC
CCCGTCTGCGATTGCGAGCTGACGGACGCCCAAGAAGAAGCCCTGGCCAA
TTACGACAACGGCGGGAAGATTGTCGTGTGCGACCCTACCTGCCTGGACA
GCGACGTCGACCAACTGCACTGCAACTGTGAGCCACAAACACACAGGACA
GTATACGGTATTCGTACGTTGCATAATAAGCAATACTGGAATAATATAGT
CGACGTTTTGTGTACTGAGATCAAGGCCTGTGTGTGTATATCTTTCCGTG
AGAGATTGGTTGCTCGCCCCCTGTGGTGCTCGCCCCCACCTGCTCATTCC
TTAAAATAAAACAAAGAATCAAAGATGGAACCTAACCCATACTAGAGCAA
AGACTCGATATGGGGTTCAAACGGTATTCCGTACAGAGACGTAATATATG
GCGAAGCGAGCAGAAAAAACAACCTAAATATCAGAAGAATTCAACATCTC
CCCTGCAGAGAATTAGATGTGCGAGGTCGGCCAACAATTTTTTCAGCACT
CTTCCATCACCTCCTGTTCCAATTCCCTCGGGGGCTCTTGCGAGTCCCAG
GACTCGTTCTCGTTCTCCCTTCTATTGTAGATACATATTTTCATATCTTT
CGGCCAATCAACCGCCAACTCAAACAGTCTTCTGGGATCTGCACCAATTA
TACTTCACAGTCGCCTCTGTGAGCCTCTGTACACTGTTCCTACGCAGTGG
CCATTGCCAAGGTATAACCAAGCACTGGTTTCATACCATCAGTTTCGAGT
CGCATCTAAGCAGTCTCAAGCTTCATTCCAACATGGGTTCCAGAGAATCA
CGATAGTAAACCTCGTTTTCCCACTGGAGGATACGTATGATCCCCGAATT
GTTTTCTTGTTTTGTATCCATGAGAGTTGACTCTTGTCTCAATTCTACCG
TACGCGGGTGGAAATAAAAAAACGCGTAGGACCTCTAACTTTCTCAGGAA
AATCTATATTCTCGTTCATGCGTTCCCCAAATCATCGCAATACAGTCCGC
GGGCGGCGTACATTCAACCCCGTTTCGAACCAACTTGCATCAACTCACCC
CCCCCCACAAAACAAACCTATCAATGCGCTCGCAGACTTCGGCTTGGGCC
AAATCTGCCGTGGGTGCGGAACGTGCTCTGATTGCAGGCCCTGCCCGGGC
ACCACCCCCACACCCACGCCGGAGCCCGCTACTCCGGAGCCCGTTACTCC
GGAGCCCCCTACTCCGGAGCCCGCGACTCCGGAGCCCGCTACTCCGGAGC
CCGCTACTCCGGAGCCCGCTACTCCGGAGCCTGTTACTGCGGAGCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1006:13602..15448-

>mRNA_L-elsbetiae_contig1006.105.1 ID=mRNA_L-elsbetiae_contig1006.105.1|Name=mRNA_L-elsbetiae_contig1006.105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig1006:13602..15448- (Laminarionema elsbetiae ELsaHSoW15)
GTGACCCCCGTGACCCCTGCACCTGTCACCCCTGAGACTCCTGCACCCAC
CACCGCCGTGACTCCAGCGCCCGTGACCCCTGGGCCCGTGACCCCCGTGA
CCCCTGCGCCTGTCACCCCTAAGACTCCTGCACCCACTACCGCCGTGAAT
CCAGCGCCGGTGACCCCAGCGCCCGTGATCCCCGTGACCCCCGCCCCTAC
GACGGCCTTCGAGGAGCCGGACATCGGTGGAGATGTGACCCCCGTGACCC
CTGCACCTGTCACCCCTGAGACTCCTGCACCCACCACCGCCGTGACTCCA
GCGCCCGTGACCCCTGGGCCCGTGACCCCCGTGACCCCTGCGCCTGTCAC
CCCTAAGACTCCTGCACCCACTACCGCCGTGAATCCAGCGCCGGTGACCC
CAGCGCCCGTGATCCCCGTGACCCCCGCCCCTACGACGGCCTTCGAGGAG
CCGGACATCGGTGGAGATGAGCCTCTCGACAGAGACGAAGACGGTGAAGC
GGACCCCGTCTGCGATTGCGAGCTGACGGACGCCCAAGAAGAAGCCCTGG
CCAATTACGACAACGGCGGGAAGATTGTCGTGTGCGACCCTACCTGCCTG
GACAGCGACGTCGACCAACTGCACTGCAACTGAGCCTCTCGACAGAGACG
AAGACGGTGAAGCGGACCCCGTCTGCGATTGCGAGCTGACGGACGCCCAA
GAAGAAGCCCTGGCCAATTACGACAACGGCGGGAAGATTGTCGTGTGCGA
CCCTACCTGCCTGGACAGCGACGTCGACCAACTGCACTGCAACTACTTCG
GCTTGGGCCAAATCTGCCGTGGGTGCGGAACGTGCTCTGATTGCAGGCCC
TGCCCGGGCACCACCCCCACACCCACGCCGGAGCCCGCTACTCCGGAGCC
CGTTACTCCGGAGCCCCCTACTCCGGAGCCCGCGACTCCGGAGCCCGCTA
CTCCGGAGCCCGCTACTCCGGAGCCCGCTACTCCGGAGCCTGTTACTGCG
GAGCCCACTTCGGCTTGGGCCAAATCTGCCGTGGGTGCGGAACGTGCTCT
GATTGCAGGCCCTGCCCGGGCACCACCCCCACACCCACGCCGGAGCCCGC
TACTCCGGAGCCCGTTACTCCGGAGCCCCCTACTCCGGAGCCCGCGACTC
CGGAGCCCGCTACTCCGGAGCCCGCTACTCCGGAGCCCGCTACTCCGGAG
CCTGTTACTGCGGAGCCC
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