mRNA_L-elsbetiae_contig10055.101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI) HSP 1 Score: 139 bits (351), Expect = 3.260e-36 Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 DPQPLSHSWETDTS P TTILSFPDK PSV F F + PLSRFMC++D G WRQC ETS+FPLSDG H+++VMAVD TGR+DPNP+ Y+WEV+ Sbjct: 571 DPQPLSHSWETDTSLPVTTILSFPDKLMPSV----FTFGSSKPLSRFMCKVDSG-LWRQCDETSQFPLSDGLHSVVVMAVDPTGRSDPNPITYNWEVS 663
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE) HSP 1 Score: 138 bits (347), Expect = 1.130e-35 Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 DPQPLSHSWETDT P TTILSFPDK PSV F F + PLSRFMC++D G WRQC ETS+FPLSDG H+++VMAVD TGR+DPNP+ Y+WEV+ Sbjct: 235 DPQPLSHSWETDTLLPVTTILSFPDKLMPSV----FTFGSSKPLSRFMCKVDSG-MWRQCDETSQFPLSDGLHSVVVMAVDPTGRSDPNPITYNWEVS 327
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A7Y6X1J8_9DELT (OmpA family protein n=2 Tax=unclassified Myxococcus TaxID=2648731 RepID=A0A7Y6X1J8_9DELT) HSP 1 Score: 73.2 bits (178), Expect = 7.360e-13 Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 DP P ++W DT+PP T ++S P T S S F F A P S + C +D G + C ET+ F ++GEHTLLV AVD G DP P ++W V+ Sbjct: 929 DPTPAQYAWTVDTTPPDTLVVSGPPTVT-SETSASFEFAASEPGSTYECSLD-GAAYVPCTETATFNGFAEGEHTLLVRAVDTAGNVDPTPAEHTWTVD 1025
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A0H4X958_9DELT (Internalin, putative n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4X958_9DELT) HSP 1 Score: 69.3 bits (168), Expect = 1.660e-11 Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 DP P ++W DT+PP T ++S P T + F F +E P S + C +D G + C E F ++G+HTLLV AVD G ADP P Y+W V+ Sbjct: 1096 DPTPAEYTWTVDTAPPDTLVVSGPATPTSQSTASFEFESSE-PGSTYECSLD-GAAYVPCAEVVTFEGFAEGDHTLLVRAVDAAGNADPTPAEYTWTVD 1192
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A4Y6CFA7_MYXXA (Cell envelope biogenesis protein OmpA n=19 Tax=Proteobacteria TaxID=1224 RepID=A0A4Y6CFA7_MYXXA) HSP 1 Score: 69.3 bits (168), Expect = 1.660e-11 Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 DP P ++W DT+ P T ++S P T S S F F A P S + C +D G + C+ET F ++GEHTLLV AVD G DP P ++W V+ Sbjct: 1134 DPTPAQYAWTVDTTAPDTLVVSGPATPTSSA-SASFEFAASEPGSSYECSLD-GAAYVPCEETVTFDGFAEGEHTLLVRAVDAAGNVDPTPAEHTWTVD 1230
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: UPI001F3F2D0F (Ig-like domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F3F2D0F) HSP 1 Score: 67.4 bits (163), Expect = 7.850e-11 Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 D P H+W DT+PP T I + P T + F F E ++ + C +D G + +C++ S F ++GEHTLLV AVD G DP P Y+WEV+ Sbjct: 1160 DATPAEHAWTVDTTPPDTFIDAGPAPVTREQSATFDFRATEA-VNYYECSLD-GAAYVRCEDPSTFEGFAEGEHTLLVRAVDMLGNVDPTPAEYAWEVD 1256
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A0H4WNX4_9DELT (Internalin, putative n=2 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WNX4_9DELT) HSP 1 Score: 65.1 bits (157), Expect = 5.040e-10 Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGP--LSRFMCRMDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEV 291 D P SH+W DT+PP T + S+ + F F A G + RF C +D GG + C + + DG+HT+LV AVD+ G D P + W V Sbjct: 1313 DATPASHAWLVDTTPPNTAFTAEVPNALTSLFNARFGFHAPGADDIDRFECSLD-GGPFYTCASPHDLTVGDGDHTMLVRAVDRAGNVDQTPATHFWRV 1410
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A250JYJ6_9DELT (Ig-like domain repeat protein n=3 Tax=Corallococcus macrosporus TaxID=35 RepID=A0A250JYJ6_9DELT) HSP 1 Score: 62.0 bits (149), Expect = 6.130e-9 Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294 DP P H+W DT P T ++S P T + S F F A P + F C +D G + C F +GEH+LLV AVD G D +P Y+W V+ Sbjct: 1820 DPTPAEHAWTVDTVEPDTLVVSGPASPT-NATSATFEFAANEPGATFECSVD-GATYMACPHPVTFEGFVEGEHSLLVRAVDAAGNVDSSPATYTWTVD 1916
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A7Y6X1N1_9DELT (Ig-like domain repeat protein n=1 Tax=Myxococcus sp. AM010 TaxID=2745138 RepID=A0A7Y6X1N1_9DELT) HSP 1 Score: 60.8 bits (146), Expect = 1.520e-8 Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQE-----TSEFPL-SDGEHTLLVMAVDQTGRADPNPVAYSWEV 291 D P H+W D +PP T I S PD T ++++ F F A P F C D GG + C +EFPL ++GEH +L+ A+D+ G D P + W V Sbjct: 567 DASPARHTWTVDLTPPDTQIDSKPDILT-NLLTATFVFSASEPGVHFECSYD-GGAYFACTSPYALPNAEFPLITEGEHRMLIRAIDEAGNPDDTPALHIWTV 667
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A7Y4IFU7_MYXXA (Uncharacterized protein n=2 Tax=Myxococcus xanthus TaxID=34 RepID=A0A7Y4IFU7_MYXXA) HSP 1 Score: 55.5 bits (132), Expect = 1.200e-6 Identity = 32/103 (31.07%), Postives = 45/103 (43.69%), Query Frame = 1 Query: 1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP------LSDGEHTLLVMAVDQTGRADPNPVAYSWEV 291 D P H W D PP T I P T + F F + F C D G ++R C P +++G+HT+L+ AVD+ G D P ++W V Sbjct: 1010 DASPARHEWRVDLEPPNTVITEKPVALTREQTAVFQFNSPDVDAVAFQCSYD-GTEFRSCASPYILPNSEISIITEGDHTMLIRAVDEAGNWDETPANHNWRV 1111 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10055.101.1 >prot_L-elsbetiae_contig10055.101.1 ID=prot_L-elsbetiae_contig10055.101.1|Name=mRNA_L-elsbetiae_contig10055.101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRback to top mRNA from alignment at L-elsbetiae_contig10055:5324..6452- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10055.101.1 ID=mRNA_L-elsbetiae_contig10055.101.1|Name=mRNA_L-elsbetiae_contig10055.101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1129bp|location=Sequence derived from alignment at L-elsbetiae_contig10055:5324..6452- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10055:5324..6452- >mRNA_L-elsbetiae_contig10055.101.1 ID=mRNA_L-elsbetiae_contig10055.101.1|Name=mRNA_L-elsbetiae_contig10055.101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig10055:5324..6452- (Laminarionema elsbetiae ELsaHSoW15)back to top |