mRNA_L-elsbetiae_contig10055.100.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10055.100.1
Unique NamemRNA_L-elsbetiae_contig10055.100.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10055.100.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.530e-44
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 2 
Query:    2 CTTVAANTTYRQAVPDGTG---CTKLETLVGEVGHSRGTLVLRSLAVGDYNLTLEAFSGFGVVDRSPVVCPFRVLAEGEMVNRTQIVLVRTPAKVLDRPDQAPVLFEFEVED 328
            C+T+AAN +Y    P  +G   CTKLETL G+VGHS GTLV+++L VGDYNLTLEAF+ FGVVDRSPVVCPFRVLAEGE VN+TQIV+VRTPAKVL+RP+QAP LFEFEVED
Sbjct:  829 CSTLAANASYSYQQPTSSGEGGCTKLETLEGQVGHSHGTLVMQNLGVGDYNLTLEAFNVFGVVDRSPVVCPFRVLAEGESVNQTQIVMVRTPAKVLNRPEQAPFLFEFEVED 940
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BLAST of mRNA_L-elsbetiae_contig10055.100.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 4.160e-35
Identity = 81/164 (49.39%), Postives = 95/164 (57.93%), Query Frame = 2 
Query:    2 CTTVAANTTYRQAVPDGT-----GCTKLETLVGEVGHSRGTLVLRSLAVGDYNLTLEAFSGFGVVDRSPVVCPFRVLAEGEMVNRTQ--------------------------------------------------IVLVRTPAKVLDRPDQAPVLFEFEVED 328
            C+T+AANT+Y    P  T     GCTKLETL G++GHS GTLV+++L VGDY L LEAF+ FGVVDRSPVVCPFRVLAEGE +N+TQ                                                  IV+VRTPAKVL+RP+QAP LFEFEVED
Sbjct:  494 CSTLAANTSYSYQQPASTASGEGGCTKLETLQGQMGHSHGTLVMQNLGVGDYKLALEAFNVFGVVDRSPVVCPFRVLAEGESINQTQGGEAIGRQAFWWKAKTFKQMQVLLTDLINQTPVPLPGFPRDTNPNSQRQKIVMVRTPAKVLNRPEQAPFLFEFEVED 657
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10055.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBK9_ECTSI1.530e-4474.11OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K857_9PHAE4.160e-3549.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10055contigL-elsbetiae_contig10055:1787..3638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10055.100.1prot_L-elsbetiae_contig10055.100.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10055 1787..3638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.5112054-CDS-L-elsbetiae_contig10055:1786..19111622815238.5112054-CDS-L-elsbetiae_contig10055:1786..1911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 1787..1911 -
1691682788.9533005-CDS-L-elsbetiae_contig10055:1786..19111691682788.9533005-CDS-L-elsbetiae_contig10055:1786..1911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 1787..1911 -
1622815238.522771-CDS-L-elsbetiae_contig10055:2821..29801622815238.522771-CDS-L-elsbetiae_contig10055:2821..2980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 2822..2980 -
1691682788.9718323-CDS-L-elsbetiae_contig10055:2821..29801691682788.9718323-CDS-L-elsbetiae_contig10055:2821..2980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 2822..2980 -
1622815238.5326242-CDS-L-elsbetiae_contig10055:3550..36381622815238.5326242-CDS-L-elsbetiae_contig10055:3550..3638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 3551..3638 -
1691682788.9822958-CDS-L-elsbetiae_contig10055:3550..36381691682788.9822958-CDS-L-elsbetiae_contig10055:3550..3638Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 3551..3638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10055.100.1

>prot_L-elsbetiae_contig10055.100.1 ID=prot_L-elsbetiae_contig10055.100.1|Name=mRNA_L-elsbetiae_contig10055.100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
LHDRCGEHDLPAGCARRYRVHQARDACRRGGPQPRHAGPAEPRRGRLQPD
ARGVQRLRCCRPQPRRLPVPGAGGRRDGQPDADRPGAHAGQGAGQTGPGA
RAVRVRGRRRRRGRGEPGQRHRGQ
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mRNA from alignment at L-elsbetiae_contig10055:1787..3638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10055.100.1 ID=mRNA_L-elsbetiae_contig10055.100.1|Name=mRNA_L-elsbetiae_contig10055.100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1852bp|location=Sequence derived from alignment at L-elsbetiae_contig10055:1787..3638- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGACCGTTGCGGCGAACACGACCTACCGGCAGGCTGTGCCCGACG
GTACCGGGTGCACCAAGCTCGAGACGCTTGTCGGCGAGGTGAGGGGTACA
ATCGTGGATCGGAAGAAGCTCTATAAGGTTGGTTTCCGGCAGGTTTTACG
CGTTGTGGCGCAGGCGGGCCAGGCAGGTGGCAGTCGAGCGCCTTCGTTCC
TTCCTTTGCACTGGAAGTGGGCTTTGTCTTTTGACACCCTCTCAAGTGTT
TTTGATAATCTTGATTTTTGTTAATTTTGTTGTCTGTTTGTCTGGTTGTT
TGTTTGTTCGTGCGTCGCCTTCGCGCGCTTTAAAGAACCGCTGCCGTTGC
GGTACGGCCGGCGTTTGGAGGTCTGCCGGCTTTCAAAACCACCCTTTTCT
CTTGGCCAAGGTAGAACACCAAAATACAAAATACATACCCCCCCAACAAC
AGACAGACAAAACGGTATTTCTTCGCCACCCACCGCCGCTCTCATCGCCA
CCGCTCTCATCGCCACCGCTCTCATCGTCGCCGCTCTCATCGTCGCCGCC
GCCGCCGCCGCCGCTATGGCTGCTTCTTCCCCGCGCGTCCTCGCCAATTT
TTTTCCGACAAAACGAAAACTAAATACACCGGCGCGCAAATAAAAAAACG
CGAGACAGGTGGGCCACAGCCGCGGCACGCTGGTCCTGCGGAGCCTCGCC
GTGGGAGACTACAACCTGACGCTCGAGGCGTTCAGCGGCTTCGGTGTTGT
CGACCGCAGCCCCGTCGTCTGCCCGTTCCGGGTGCTGGCGGAAGGCGAGA
TGGTCAACCGGACGCAGGTGCGCGTCGTGTTTGGTTCTGCAATTCTCTAT
CGTTGTCGTCGTCGTTAATATGGTGTTGTTTATGTAATAAACAGACCACC
GCGTTCTCCGCGTGCTCAGACGCCCCCCCCCCCCCCCCCCCCCCCCCGCC
CCGCCCCCGCGGCGGGGCCGGGCCCCCTTCCCCCCCGCCGCCCCCCCACC
CCCAACCCTCCCCCCCGGCNNNNNNNNNNTGTTTGTCGCCGTAGATTTGT
GTTTCTTTTCTGATCAAACCGCCCCCCCCCCCCCCTGCCCCCCCCGCCCC
CCCCCCCCCCCCCCCCCGCTGTAGCAGCGCGGGCGGGCGGGCGGGCCCCT
TTCGCGCCCGCGGCCGCCGGGCGCTGATTGGGTCCCGCGAGTCGCGTGCG
CGCACGTACCCCCATACCCCCCCTCCCCATCCCGATCACGGCGTAGTGCT
TTTCGGGCACCCGACGACCGCGCACGAAGCTGTGCAGCGACGGAAAACAC
GGTGTGTGTTCAATGCCGTGTTTCCCGCTCTCTTGTCTTGCATTTTTACC
CGAGCCGGACAGCACGCAGATGGAACACCGGCTCCGCGACCGAATATACT
CACGCTTCTCATCTTCCCCCACCCTTCCCCCCTCCCCCATTTGTGTCTCC
TGACCCCCACCTCCTCCCTTTTTGCCGCATCTCTCGCCGTTGCCGCCCCC
GTTACCGTTACCGCCCCGTTTCTTTCGCGACGTCAACCGGTGACCCGACC
CCGGCCCCGAACCGAACCGAACTGGCCACGACTATCCATTCGCGTGCTGA
TTTTTGTCTTGGCTTGTCTTCTTCTTGTCTTATCTTCTTGTCTTGTCTTA
TCTTCTTCTTGTCTTGTCTTGCCTGTTTGTTTGTTTGTTTTTGTTTGTTC
GTCTTCCTGTCGTCGACCGAAGCACAGATCGTCCTGGTGCGCACGCCGGC
CAAGGTGCTGGACAGACCGGACCAGGCGCCCGTGCTGTTCGAGTTCGAGG
TCGAAGACGCCGACGCGGACGCGGCGAGCCCGGACAACGCCACCGAGGCC
AA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10055:1787..3638-

>mRNA_L-elsbetiae_contig10055.100.1 ID=mRNA_L-elsbetiae_contig10055.100.1|Name=mRNA_L-elsbetiae_contig10055.100.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig10055:1787..3638- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGACCGTTGCGGCGAACACGACCTACCGGCAGGCTGTGCCCGACG
GTACCGGGTGCACCAAGCTCGAGACGCTTGTCGGCGAGCTGCACGACCGT
TGCGGCGAACACGACCTACCGGCAGGCTGTGCCCGACGGTACCGGGTGCA
CCAAGCTCGAGACGCTTGTCGGCGAGGTGGGCCACAGCCGCGGCACGCTG
GTCCTGCGGAGCCTCGCCGTGGGAGACTACAACCTGACGCTCGAGGCGTT
CAGCGGCTTCGGTGTTGTCGACCGCAGCCCCGTCGTCTGCCCGTTCCGGG
TGCTGGCGGAAGGCGAGATGGTCAACCGGACGCAGGTGGGCCACAGCCGC
GGCACGCTGGTCCTGCGGAGCCTCGCCGTGGGAGACTACAACCTGACGCT
CGAGGCGTTCAGCGGCTTCGGTGTTGTCGACCGCAGCCCCGTCGTCTGCC
CGTTCCGGGTGCTGGCGGAAGGCGAGATGGTCAACCGGACGCAGATCGTC
CTGGTGCGCACGCCGGCCAAGGTGCTGGACAGACCGGACCAGGCGCCCGT
GCTGTTCGAGTTCGAGGTCGAAGACGCCGACGCGGACGCGGCGAGCCCGG
ACAACGCCACCGAGGCCAAATCGTCCTGGTGCGCACGCCGGCCAAGGTGC
TGGACAGACCGGACCAGGCGCCCGTGCTGTTCGAGTTCGAGGTCGAAGAC
GCCGACGCGGACGCGGCGAGCCCGGACAACGCCACCGAGGCCAA
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