mRNA_L-elsbetiae_contig10054.99.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10054.99.1
Unique NamemRNA_L-elsbetiae_contig10054.99.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10054.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10054contigL-elsbetiae_contig10054:4003..4397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size395
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10054.99.1prot_L-elsbetiae_contig10054.99.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10054 4014..4358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.4512324-UTR-L-elsbetiae_contig10054:4002..40131622815238.4512324-UTR-L-elsbetiae_contig10054:4002..4013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10054 4003..4013 +
1691682788.923505-UTR-L-elsbetiae_contig10054:4002..40131691682788.923505-UTR-L-elsbetiae_contig10054:4002..4013Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10054 4003..4013 +
1622815238.4769156-UTR-L-elsbetiae_contig10054:4358..43971622815238.4769156-UTR-L-elsbetiae_contig10054:4358..4397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10054 4359..4397 +
1691682788.9432669-UTR-L-elsbetiae_contig10054:4358..43971691682788.9432669-UTR-L-elsbetiae_contig10054:4358..4397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10054 4359..4397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.4653146-CDS-L-elsbetiae_contig10054:4013..43581622815238.4653146-CDS-L-elsbetiae_contig10054:4013..4358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10054 4014..4358 +
1691682788.935138-CDS-L-elsbetiae_contig10054:4013..43581691682788.935138-CDS-L-elsbetiae_contig10054:4013..4358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10054 4014..4358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10054.99.1

>prot_L-elsbetiae_contig10054.99.1 ID=prot_L-elsbetiae_contig10054.99.1|Name=mRNA_L-elsbetiae_contig10054.99.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MHRYAVFLLKSMPKCLTSAMHCTTCAGAFFLLIPDRATGTCPQFSATQKQ
ADQSTEIRDMYVSTYVHTYVPEARPDLLDEKSCSLDIICTHFSVAAAGIP
SRRYQPSGHGLLYI*
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mRNA from alignment at L-elsbetiae_contig10054:4003..4397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10054.99.1 ID=mRNA_L-elsbetiae_contig10054.99.1|Name=mRNA_L-elsbetiae_contig10054.99.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=395bp|location=Sequence derived from alignment at L-elsbetiae_contig10054:4003..4397+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGTATGTAGATGCATAGATATGCGGTCTTTCTATTAAAGTCCATGCCA
AAGTGTCTTACGAGTGCAATGCACTGCACCACCTGCGCTGGAGCCTTTTT
CTTGTTGATACCAGACCGTGCAACCGGTACCTGCCCCCAGTTTTCCGCAA
CACAAAAACAGGCGGATCAAAGCACAGAGATACGAGATATGTATGTATCG
ACATATGTACATACATACGTACCCGAGGCAAGACCTGATCTTCTTGACGA
AAAATCATGCAGTCTAGATATCATCTGCACACACTTTAGCGTGGCCGCAG
CGGGTATTCCTTCACGTCGATACCAGCCAAGCGGGCACGGACTTCTATAT
ATTTAACAAAATACGGAGTATCAACTTCTCCATCCCTGCTGGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10054:4003..4397+

>mRNA_L-elsbetiae_contig10054.99.1 ID=mRNA_L-elsbetiae_contig10054.99.1|Name=mRNA_L-elsbetiae_contig10054.99.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig10054:4003..4397+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATAGATATGCGGTCTTTCTATTAAAGTCCATGCCAAAGTGTCTTAC
GAGTGCAATGCACTGCACCACCTGCGCTGGAGCCTTTTTCTTGTTGATAC
CAGACCGTGCAACCGGTACCTGCCCCCAGTTTTCCGCAACACAAAAACAG
GCGGATCAAAGCACAGAGATACGAGATATGTATGTATCGACATATGTACA
TACATACGTACCCGAGGCAAGACCTGATCTTCTTGACGAAAAATCATGCA
GTCTAGATATCATCTGCACACACTTTAGCGTGGCCGCAGCGGGTATTCCT
TCACGTCGATACCAGCCAAGCGGGCACGGACTTCTATATATTTAAATGCA
TAGATATGCGGTCTTTCTATTAAAGTCCATGCCAAAGTGTCTTACGAGTG
CAATGCACTGCACCACCTGCGCTGGAGCCTTTTTCTTGTTGATACCAGAC
CGTGCAACCGGTACCTGCCCCCAGTTTTCCGCAACACAAAAACAGGCGGA
TCAAAGCACAGAGATACGAGATATGTATGTATCGACATATGTACATACAT
ACGTACCCGAGGCAAGACCTGATCTTCTTGACGAAAAATCATGCAGTCTA
GATATCATCTGCACACACTTTAGCGTGGCCGCAGCGGGTATTCCTTCACG
TCGATACCAGCCAAGCGGGCACGGACTTCTATATATTTAA
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