mRNA_L-elsbetiae_contig10050.97.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10050.97.1
Unique NamemRNA_L-elsbetiae_contig10050.97.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10050.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10050contigL-elsbetiae_contig10050:4122..5018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size453
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.2959418-CDS-L-elsbetiae_contig10050:4123..43941622815238.2959418-CDS-L-elsbetiae_contig10050:4123..4394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 4124..4394 -
1691682788.8664637-CDS-L-elsbetiae_contig10050:4123..43941691682788.8664637-CDS-L-elsbetiae_contig10050:4123..4394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 4124..4394 -
1622815238.3371146-CDS-L-elsbetiae_contig10050:4839..50181622815238.3371146-CDS-L-elsbetiae_contig10050:4839..5018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 4840..5018 -
1691682788.8871255-CDS-L-elsbetiae_contig10050:4839..50181691682788.8871255-CDS-L-elsbetiae_contig10050:4839..5018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 4840..5018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10050.97.1prot_L-elsbetiae_contig10050.97.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10050 4124..5018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10050.97.1

>prot_L-elsbetiae_contig10050.97.1 ID=prot_L-elsbetiae_contig10050.97.1|Name=mRNA_L-elsbetiae_contig10050.97.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
FPSSSDGYRQQSVGGDGGGDLSLPGSPRCGVDFPSGAFQAGPAANSIMAA
AEVAGLRRGSLSPKASALSCCHPSAGRKEAFFPCCPPSPLSFRPVSPDHP
DPGGGESRPQQLQRGPAVSTGMVAAGGVVSDTFSPPSSCTSFFSLCASPC
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mRNA from alignment at L-elsbetiae_contig10050:4122..5018-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10050.97.1 ID=mRNA_L-elsbetiae_contig10050.97.1|Name=mRNA_L-elsbetiae_contig10050.97.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=897bp|location=Sequence derived from alignment at L-elsbetiae_contig10050:4122..5018- (Laminarionema elsbetiae ELsaHSoW15)
TTTCCCTCCAGTAGCGATGGGTACCGCCAGCAGAGCGTAGGCGGCGATGG
TGGCGGTGACTTGTCTCTGCCTGGCAGCCCCAGGTGTGGTGTCGATTTTC
CCTCGGGTGCATTCCAAGCCGGGCCCGCCGCCAACTCCATCATGGCGGCG
GCGGAGGTAGCAGGCTTACGCCGTGGCAGGTACGTTTTGCCTAGATCGTA
TGATCTGCGGCGTCGGTCTTGGCTCGTGCTGTGTGCATGTAATTCGAGCG
TGCCCCCGGCCAAACCTATCGAGCACCCATTGATCTCCACCTCCGCTGCA
TGTCCCACCACCTCACTTTTTGTATTGCCCCGCCAAGCGCTTTTCGTGAT
GCGATCGGTCAATTGACGACAAACCTCTCGGGCTCCTAACAGTGATGAAC
GCCTCCTCCCAAATATTAAAAACCGCCACCCATCTCCCCTCGACGGAGGA
GTCAATGCTTTGAACCACATCTTACTCGCTTCTCGCCGCCACCAATACGT
TGGATAATCTGTTGATCCCTCCCAACTCCGAGGAGGAGGGCGCTAACGCT
CTCCCTGTCACCTCCCCCCCCCCCTCCCCTCCGCGCGCGCCCCACCGGAA
TACTGTCCATCCCTGCGATTGCAGCTTAAGTCCGAAGGCGTCGGCCCTGT
CCTGCTGCCACCCGAGCGCAGGAAGGAAAGAGGCGTTTTTCCCATGCTGT
CCCCCCTCCCCCCTGAGCTTCCGCCCTGTCTCCCCGGACCATCCCGACCC
CGGCGGAGGCGAAAGCCGGCCCCAGCAGCTCCAGAGGGGCCCCGCCGTGT
CGACCGGGATGGTTGCTGCTGGTGGCGTCGTCAGTGACACGTTTTCCCCT
CCTTCTTCGTGCACATCTTTCTTCTCCCTTTGTGCGTCCCCTTGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10050:4122..5018-

>mRNA_L-elsbetiae_contig10050.97.1 ID=mRNA_L-elsbetiae_contig10050.97.1|Name=mRNA_L-elsbetiae_contig10050.97.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig10050:4122..5018- (Laminarionema elsbetiae ELsaHSoW15)
TTTCCCTCCAGTAGCGATGGGTACCGCCAGCAGAGCGTAGGCGGCGATGG
TGGCGGTGACTTGTCTCTGCCTGGCAGCCCCAGGTGTGGTGTCGATTTTC
CCTCGGGTGCATTCCAAGCCGGGCCCGCCGCCAACTCCATCATGGCGGCG
GCGGAGGTAGCAGGCTTACGCCGTGGCAGTTTCCCTCCAGTAGCGATGGG
TACCGCCAGCAGAGCGTAGGCGGCGATGGTGGCGGTGACTTGTCTCTGCC
TGGCAGCCCCAGGTGTGGTGTCGATTTTCCCTCGGGTGCATTCCAAGCCG
GGCCCGCCGCCAACTCCATCATGGCGGCGGCGGAGGTAGCAGGCTTACGC
CGTGGCAGCTTAAGTCCGAAGGCGTCGGCCCTGTCCTGCTGCCACCCGAG
CGCAGGAAGGAAAGAGGCGTTTTTCCCATGCTGTCCCCCCTCCCCCCTGA
GCTTCCGCCCTGTCTCCCCGGACCATCCCGACCCCGGCGGAGGCGAAAGC
CGGCCCCAGCAGCTCCAGAGGGGCCCCGCCGTGTCGACCGGGATGGTTGC
TGCTGGTGGCGTCGTCAGTGACACGTTTTCCCCTCCTTCTTCGTGCACAT
CTTTCTTCTCCCTTTGTGCGTCCCCTTGTCTTAAGTCCGAAGGCGTCGGC
CCTGTCCTGCTGCCACCCGAGCGCAGGAAGGAAAGAGGCGTTTTTCCCAT
GCTGTCCCCCCTCCCCCCTGAGCTTCCGCCCTGTCTCCCCGGACCATCCC
GACCCCGGCGGAGGCGAAAGCCGGCCCCAGCAGCTCCAGAGGGGCCCCGC
CGTGTCGACCGGGATGGTTGCTGCTGGTGGCGTCGTCAGTGACACGTTTT
CCCCTCCTTCTTCGTGCACATCTTTCTTCTCCCTTTGTGCGTCCCCTTGT
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