mRNA_L-elsbetiae_contig10050.96.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10050.96.1
Unique NamemRNA_L-elsbetiae_contig10050.96.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10050.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10050contigL-elsbetiae_contig10050:3022..3851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10050.96.1prot_L-elsbetiae_contig10050.96.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10050 3022..3820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.2322545-CDS-L-elsbetiae_contig10050:3021..31421622815238.2322545-CDS-L-elsbetiae_contig10050:3021..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 3022..3142 -
1691682788.8405154-CDS-L-elsbetiae_contig10050:3021..31421691682788.8405154-CDS-L-elsbetiae_contig10050:3021..3142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 3022..3142 -
1622815238.2463605-CDS-L-elsbetiae_contig10050:3641..38201622815238.2463605-CDS-L-elsbetiae_contig10050:3641..3820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 3642..3820 -
1691682788.8497028-CDS-L-elsbetiae_contig10050:3641..38201691682788.8497028-CDS-L-elsbetiae_contig10050:3641..3820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 3642..3820 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.2604063-UTR-L-elsbetiae_contig10050:3820..38511622815238.2604063-UTR-L-elsbetiae_contig10050:3820..3851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10050 3821..3851 -
1691682788.8581488-UTR-L-elsbetiae_contig10050:3820..38511691682788.8581488-UTR-L-elsbetiae_contig10050:3820..3851Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10050 3821..3851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10050.96.1

>prot_L-elsbetiae_contig10050.96.1 ID=prot_L-elsbetiae_contig10050.96.1|Name=mRNA_L-elsbetiae_contig10050.96.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAELDHSKSNKANAGARRFGGSLEEFRRGALCRASTASPRRSISGISGGC
TETSAAKRTRSSRPPGGGWMDDCIRRGDRRRGGGGTVTNKQRNGSNNNNN
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mRNA from alignment at L-elsbetiae_contig10050:3022..3851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10050.96.1 ID=mRNA_L-elsbetiae_contig10050.96.1|Name=mRNA_L-elsbetiae_contig10050.96.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=830bp|location=Sequence derived from alignment at L-elsbetiae_contig10050:3022..3851- (Laminarionema elsbetiae ELsaHSoW15)
TGGGTTTTCCCGCCCCGTGGCAGAAGAACAGATGGCGGAGCTTGACCACA
GCAAGAGCAACAAGGCGAACGCCGGCGCCAGGAGATTCGGCGGCAGCCTC
GAAGAGTTTCGGCGGGGGGCGCTGTGCCGGGCCTCCACGGCGAGCCCGCG
ACGCAGCATTTCTGGGATTTCAGGGGGCTGCACTGAAACCTCGGCGGCGA
AGCGCACCAGGTTTGTCCAGTCCAGATTGCACCATCCAGTACTCAGAAGT
CTTCTTGTCTTGGCTCACTCGAAATCACTCTCCCCGCAATATTCTGCCAG
TACTCAAGACACACACAATGGAACAGCTTGTTGCTGTACGTGAGAGAGTT
TTTTTCGCAGGCCCAAAGTTTGACCCGACGGCATGCCTCGGCCCTTTGTA
CTGGGACGGGTATCGGGCCCAATCGAGCAATAGATACATTCATGGATAAC
AGCCGTCTCGGGCTTCAAATGAGAGCGTAGGATACTCGGAACCAAAACAG
CGTGATTTGAGAGATATGTACTCGAGGTGCGTGCGGCGAAACAAGGGGGG
GGGGGGAGGATAACCCTGTCGGGCGGGCCCCTTTTTGGACGCTGATAGTG
TGCCTACGCCGCGGTACGGCATCATCTCCCCTGTACTACATTTGAGAACG
CGTGCCTAACCCTCCTGTTGTTCATGCTTGTATTCCTGCGCGCCCTAAAT
ATCACACAGAAGCAGCCGACCACCCGGAGGAGGCTGGATGGACGACTGTA
TCAGGAGGGGTGACCGTCGAAGAGGAGGAGGAGGCACGGTGACCAACAAA
CAACGCAACGGCAGCAACAACAACAACAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10050:3022..3851-

>mRNA_L-elsbetiae_contig10050.96.1 ID=mRNA_L-elsbetiae_contig10050.96.1|Name=mRNA_L-elsbetiae_contig10050.96.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10050:3022..3851- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGAGCTTGACCACAGCAAGAGCAACAAGGCGAACGCCGGCGCCAG
GAGATTCGGCGGCAGCCTCGAAGAGTTTCGGCGGGGGGCGCTGTGCCGGG
CCTCCACGGCGAGCCCGCGACGCAGCATTTCTGGGATTTCAGGGGGCTGC
ACTGAAACCTCGGCGGCGAAGCGCACCAGATGGCGGAGCTTGACCACAGC
AAGAGCAACAAGGCGAACGCCGGCGCCAGGAGATTCGGCGGCAGCCTCGA
AGAGTTTCGGCGGGGGGCGCTGTGCCGGGCCTCCACGGCGAGCCCGCGAC
GCAGCATTTCTGGGATTTCAGGGGGCTGCACTGAAACCTCGGCGGCGAAG
CGCACCAGAAGCAGCCGACCACCCGGAGGAGGCTGGATGGACGACTGTAT
CAGGAGGGGTGACCGTCGAAGAGGAGGAGGAGGCACGGTGACCAACAAAC
AACGCAACGGCAGCAACAACAACAACAACAAGCAGCCGACCACCCGGAGG
AGGCTGGATGGACGACTGTATCAGGAGGGGTGACCGTCGAAGAGGAGGAG
GAGGCACGGTGACCAACAAACAACGCAACGGCAGCAACAACAACAACAAC
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