Homology
BLAST of mRNA_L-elsbetiae_contig10040.90.1 vs. uniprot
Match:
D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)
HSP 1 Score: 98.6 bits (244), Expect = 1.230e-19
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1
Query: 508 MCGASYTHVESSPGNGGSGTSGMLHHLFKKHPLIHAEIMKANPPSKNRKLEGAAAK 675
+CGA+YTHVES PGNGGSGTSGMLHHLFKKHPLIHAEI++AN SK RK EGA K
Sbjct: 8 LCGATYTHVESRPGNGGSGTSGMLHHLFKKHPLIHAEIIRANSSSKMRKAEGAVVK 63
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10040.90.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.23e-19 / Id = 80.36 Sequence D7G031_ECTSI
Match Name E-value Identity Description
D7G031_ECTSI 1.230e-19 80.36 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 789
Cds size 678
Stop 0
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815237.5392485-CDS-L-elsbetiae_contig10040:1012..1140 1622815237.5392485-CDS-L-elsbetiae_contig10040:1012..1140 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10040 1013..1140 -
1691682788.285754-CDS-L-elsbetiae_contig10040:1012..1140 1691682788.285754-CDS-L-elsbetiae_contig10040:1012..1140 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10040 1013..1140 -
1622815237.5515285-CDS-L-elsbetiae_contig10040:1435..1587 1622815237.5515285-CDS-L-elsbetiae_contig10040:1435..1587 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10040 1436..1587 -
1691682788.295771-CDS-L-elsbetiae_contig10040:1435..1587 1691682788.295771-CDS-L-elsbetiae_contig10040:1435..1587 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10040 1436..1587 -
1622815237.5641716-CDS-L-elsbetiae_contig10040:4702..5100 1622815237.5641716-CDS-L-elsbetiae_contig10040:4702..5100 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10040 4703..5100 -
1691682788.3047056-CDS-L-elsbetiae_contig10040:4702..5100 1691682788.3047056-CDS-L-elsbetiae_contig10040:4702..5100 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig10040 4703..5100 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815237.574417-UTR-L-elsbetiae_contig10040:5100..5211 1622815237.574417-UTR-L-elsbetiae_contig10040:5100..5211 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10040 5101..5211 -
1691682788.3127751-UTR-L-elsbetiae_contig10040:5100..5211 1691682788.3127751-UTR-L-elsbetiae_contig10040:5100..5211 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig10040 5101..5211 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10040.90.1
>prot_L-elsbetiae_contig10040.90.1 ID=prot_L-elsbetiae_contig10040.90.1|Name=mRNA_L-elsbetiae_contig10040.90.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
MADQSQVDTASASSQPPAPPSSQAPTQPLATPPSSQALGTGPPAPAVVLP LPPQQHGGAGVVASAAAAATAAGLGQHQLYTPSGRKRKQRTSGVWRYFEQ FTPAAPKGRNVRCTILVDAPADPALGVPQRSVMCGASYTHVESSPGNGGS GTSGMLHHLFKKHPLIHAEIMKANPPSKNRKLEGAAAKVGGSATGNGKDS SSSPPGTTAAAARPRARIGGGGGGDG back to top mRNA from alignment at L-elsbetiae_contig10040:1013..5211-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10040.90.1 ID=mRNA_L-elsbetiae_contig10040.90.1|Name=mRNA_L-elsbetiae_contig10040.90.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4199bp|location=Sequence derived from alignment at L-elsbetiae_contig10040:1013..5211- (Laminarionema elsbetiae ELsaHSoW15)TCCGCACCGGTCTCTTTCCCGACGCCCTTCCACACACCGCACCGGTCTCT
TTCCCGGGAACGAAGCCTCGGCCTCCGGCACACGGATCTTGCGTTTTGCT
GATTTTGCAAC ATGGCGGATCAGTCGCAGGTTGACACAGCGTCCGCATCA
TCTCAACCCCCAGCTCCGCCATCGTCTCAAGCCCCCACTCAACCATTGGC
TACTCCGCCATCGTCTCAAGCCCTTGGTACTGGTCCTCCTGCCCCTGCGG
TCGTCTTGCCCCTGCCACCCCAACAACATGGCGGTGCCGGTGTTGTGGCA
TCAGCGGCGGCGGCGGCGACGGCGGCGGGCCTTGGGCAGCATCAGCTGTA
CACTCCATCCGGGAGGAAGAGGAAGCAGAGGACGTCGGGGGTATGGCGGT
ATTTCGAGCAGTTCACACCGGCGGCTCCGAAAGGCCGGAACGTGCGCTGT
ACGATTCTAGTCGACGCCCCGGCTGACCCTGCGCTGGGAGTGCCGCAACG
CTCAGTTAT GTGAGTTTTGCCTGCTGGGTTATGTGCATTCCATGGGACTG
GTGAACTTATACAGGAGGTCGCGGAGTTCGCTGCCCGGGGTCCCCTGCTC
CTTTTGGCGTTCGTTGTGTTGTCTCCACATTAAAAACGATTCCATTGTTT
GCAGGGGCGGGGAATGTCCAACGGAAAGCGTGGAGTCTGCACGGATCTAC
GTATGTTTGTATGATCGTTCAGCGGTGACAGTAGTACAGTAGTTTTAGCT
TTGGTTGGCAGCTCTCCGTAGTACAAATGGCGCCACCATCAGCCTAAGAT
ACGTAATTACTCCGTATGTAAAATAAGTATTCAAATATAAGAAACTTTCA
ACTTTCCATTTTGTAAGAATTTGAACATAGTCTATTGTACAAATCCGACG
TGCCCAGAGGGGGAGAACAAGAACCCTATTTAACCCGCAGATGAGATGCA
TTCCTGCCACCATGAAAATAACATACATACATATTTAATTGTATACACAC
TAGAGTCGGCGGCCGAAGATACGAACATCGCCGAGGGTTTGCGCGTGATG
GGGGCGGGACCCAAAGATCCAGGATCGATCTTCAAGATACCCCCCCCCAC
ACAGCAGCAGGATATCAGAGGATGGTGCGGCGGGCAGGGGCTGCCGATGA
TGTAAGGGCATGAAAAGGACTCGTGGGCATTGCGAATGGGATGCCAGCTG
GGCATAAGAACAAGAACCCGTGCTCGGTTTGGGCGGCCAGTAAGCCGCGA
GCCTCGGCAAAAAATAAGAGTTTCTTAAAAGGGGTTGCTGACAACCGATC
TTGGGGTTGGCTGGGTTTGAAAAAGACCGAACGAGCACCCCACAACCACA
CAGCAGATACACCAGACCAGTAGGGAAGGGTTGCGCAAGAAGAGAAGTGC
TGGTTCGCTCACCCAGCGGCGAGCGGGGCTGCTCTTTATATACGTATCAC
GTAGTTTACCACCCCCCCCCCCAACAGTCTGAAATCAGGATAAATATTAC
AGCAGTCTAATATCAAGTCAAAAGAGCCAAAACAGCGGGCGCTCAAATGA
GGTCTGCCTTGGTAAGTTAAGCAGTTTCGGGCATGGAATCACTAGAGCTA
ACCATGGAAAGGTCACGTGTGTATTGACGCGCTCAGATCTGCTGCTGGGG
CGGAGAGATCGAGAGTCAAAGCAGCGACCGAGAATCTCCGCAAATTGACC
GACACACCCTGTCTCCCACTGCCGTGCTCGCCGCCACGGACCCCAATCTC
CTGAACTGCGGGTCTACAGCAGTAGCTGACACCACCAGCTACTGCTGAGG
ACCCGCAGTTCAGGCGGTTACGGCCCGTGGCGGCAAGCACAGCCGCGACA
AACGTTTGTTATTGGTCAAATTTGCAGACAGTCCAGCGACTGCTGCGACC
TTCGATATCTCCGCTCAAGCAGCAGATCTGAGCGCGCCAACATACACGTG
ACTTCTCCATGGTTAGCTCTAGTGATTCCATGCCCGAAACTGCTTAACTT
TCGACGGGAAGTTGGTTTTCGTTATACTCGGCCTTGTTATCTTGATTTTA
GTGGGAAACTGCTTAACCACCGTTGTCAGCACCCCCTTAAGGCTGCACCA
CGCAGCACAGCTTTGAAATCTGGGGTAGGGGTTCCAGGAGAGAGCCCGTA
GAGATACTTGTTTTTTTTATGGCGGTTCTTTTCCGCCATCTCCCACAGTA
AATGCCGTAATCTCTCTCCAGCTGCCCTATAGAGTATCTCACCGCAAAAT
CGATTTTTGCGCTTCGAAACAAGAGCCGATACCAAAACTCCTCAGTCGGT
CCTTGGAGTTGGCTGTCTCAGGTAGATCTTACTGTTGGTATCAGAGCAGA
GAGCAATATGTACCACGGTCGATCGTTTTAATCCTAGTCTGCACCAAGAA
AACTACATTTTTGTTTGTCCGCAAAAGCGGGGCATGCGCGCTTGGGTAGA
CAGCAGCGAGGGTCGGCCATGGAGCACTGGAGGTCTTTGGAGACATGGTA
TTCGGCTGAGCAACCCTTATAAGACCCTCGGAGGAACATAGTCGGAGCAC
AGCAGGAGCGGGGCACAATAGCTTTCGATCTGGAGAACTTCGTGTTCTCA
AACCGTCTCACTACGCCCCCCTTTTTCGTAAACCTGGTCGGGTTTTGCTC
AACGAACAAAGGCACACGCGCCTTGCGCACCAGCCCAAACAGCAGACACA
CGAAGATAGCCAGGATGTTACCAGTCAAGAAAATGGGGCTGAAGACAGCA
GTCAAACGGATCCCGACCCCCATAGAAATTGCGGTGCCAAACACGTGTTC
TTAATGTACTGATTTCAAAGCGGAAGAAACCAGAACCAACAGTCTATTCC
CCGCAACTTCAACTACGTGGTGCACCCTTAAGTGGTGGCGTCATCTGTAC
CGAACAAGCGTTCTGAAGGGTCGGTACCTTCGAGTCCGTCTTATTTCTTT
CATTTTTCAGTACACTTTTTTTGGGGTAAGTTATCCTGTGACCACGGGAA
TCGACCGCGACAGTGGTGGATTAGTACGGACTCGTGGAGGTGTACTGGAT
AGAGAGTTCGGAACGGTTTTGAATGCGACACAACAACAACAACAACAACA
ACAACAACAACACAACATGTATGTATGTACACTCATGTCCCCCCGGAAAT
ATGAAAATAAGCAGTGAACACCCACCCCCAAGAAAAAACACTGAGACTGC
TCACGCTTTCAAAACCTGAAGTCAACACGTGATGGCAAAGGTGCCCATGA
CAAAAAGGGAATTTTCAGTTGTTGGCACTGCTGCTCATCGGGCGTTGTGT
GCGTCACAATGTATGTATGTACGTACCCGTGTACCGTAGGTGACATAAGA
TATGACACCCCCTGGGCCGAGATTGAAAGCTTGGTTACTCCGCAACGAAT
ACGATTCTAACCGCAAACGCCTCGTTTTCGGACAGCTCTCGACGAGATAT
TTCCAACGCCGCCCTTTTCGGGACTGTCGCTCTGCTTGCTACTGTGGAGT
ACTTGAGCTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTATGTCATCTA
CGGTAGACGTCTCGTGCTTATCCCGACGGCCGGCCGCCGCTGTGCAACCT
ACTGCCGTAACTTCGTCTATCTAGGTGCGGAGCTTCGTACACCCACGTCG
AGTCGAGCCCCGGCAACGGAGGCTCTGGCACTTCCGGCATGCTGCACCAC
CTCTTCAAGAAGCACCCGCTCATCCACGCCGAGATCATGAAGGCTAATCC
CCCCTCCAAGAATCGGAAGCTGGAAG GTACGGCAATGTGCTGCTGTATTA
TTGTAAATTTAAATTACAGCGTACGTGCAAATACATGTACCTACGAAGTA
CGTCCGTCCCGGAAGTGTTATCATTGCTGGCTGCATTTCCAGTTTTGTTT
TCTACCTCACGTATTGCAGCGTGTCGAGGGGGGCGGAGGGTTCCAGACTG
TCTGTGTCTTGTCTGATCTATACATATATACATACGGTACATGTTTTTTC
CTTTCAATCACACCCTTGAAACCGTGGCGCGCGCCGGGTATCGGGGGTGC
CGTCGTTCTTTCTCTCGGCAGGCGCGGCAGCGAAGGTGGGGGGCTCCGCC
ACCGGGAACGGCAAAGACTCGTCGTCGTCTCCTCCCGGCACCACGGCGGC
GGCGGCCCGACCGAGGGCGCGCATCGGCGGCGGCGGCGGCGGGGATGGG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10040:1013..5211-
>mRNA_L-elsbetiae_contig10040.90.1 ID=mRNA_L-elsbetiae_contig10040.90.1|Name=mRNA_L-elsbetiae_contig10040.90.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1356bp|location=Sequence derived from alignment at L-elsbetiae_contig10040:1013..5211- (Laminarionema elsbetiae ELsaHSoW15) ATGGCGGATCAGTCGCAGGTTGACACAGCGTCCGCATCATCTCAACCCCC AGCTCCGCCATCGTCTCAAGCCCCCACTCAACCATTGGCTACTCCGCCAT CGTCTCAAGCCCTTGGTACTGGTCCTCCTGCCCCTGCGGTCGTCTTGCCC CTGCCACCCCAACAACATGGCGGTGCCGGTGTTGTGGCATCAGCGGCGGC GGCGGCGACGGCGGCGGGCCTTGGGCAGCATCAGCTGTACACTCCATCCG GGAGGAAGAGGAAGCAGAGGACGTCGGGGGTATGGCGGTATTTCGAGCAG TTCACACCGGCGGCTCCGAAAGGCCGGAACGTGCGCTGTACGATTCTAGT CGACGCCCCGGCTGACCCTGCGCTGGGAGTGCCGCAACGCTCAGTTATAT GGCGGATCAGTCGCAGGTTGACACAGCGTCCGCATCATCTCAACCCCCAG CTCCGCCATCGTCTCAAGCCCCCACTCAACCATTGGCTACTCCGCCATCG TCTCAAGCCCTTGGTACTGGTCCTCCTGCCCCTGCGGTCGTCTTGCCCCT GCCACCCCAACAACATGGCGGTGCCGGTGTTGTGGCATCAGCGGCGGCGG CGGCGACGGCGGCGGGCCTTGGGCAGCATCAGCTGTACACTCCATCCGGG AGGAAGAGGAAGCAGAGGACGTCGGGGGTATGGCGGTATTTCGAGCAGTT CACACCGGCGGCTCCGAAAGGCCGGAACGTGCGCTGTACGATTCTAGTCG ACGCCCCGGCTGACCCTGCGCTGGGAGTGCCGCAACGCTCAGTTATGTGC GGAGCTTCGTACACCCACGTCGAGTCGAGCCCCGGCAACGGAGGCTCTGG CACTTCCGGCATGCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCACG CCGAGATCATGAAGGCTAATCCCCCCTCCAAGAATCGGAAGCTGGAAGGT GCGGAGCTTCGTACACCCACGTCGAGTCGAGCCCCGGCAACGGAGGCTCT GGCACTTCCGGCATGCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCA CGCCGAGATCATGAAGGCTAATCCCCCCTCCAAGAATCGGAAGCTGGAAG GCGCGGCAGCGAAGGTGGGGGGCTCCGCCACCGGGAACGGCAAAGACTCG TCGTCGTCTCCTCCCGGCACCACGGCGGCGGCGGCCCGACCGAGGGCGCG CATCGGCGGCGGCGGCGGCGGGGATGGGGCGCGGCAGCGAAGGTGGGGGG CTCCGCCACCGGGAACGGCAAAGACTCGTCGTCGTCTCCTCCCGGCACCA CGGCGGCGGCGGCCCGACCGAGGGCGCGCATCGGCGGCGGCGGCGGCGGG GATGGG back to top