mRNA_L-elsbetiae_contig1004.88.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1004.88.1
Unique NamemRNA_L-elsbetiae_contig1004.88.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1004.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1004contigL-elsbetiae_contig1004:16322..17631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1310
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1004.88.1prot_L-elsbetiae_contig1004.88.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1004 16422..16766 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815237.40201-UTR-L-elsbetiae_contig1004:16321..164211622815237.40201-UTR-L-elsbetiae_contig1004:16321..16421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1004 16322..16421 +
1691682788.17176-UTR-L-elsbetiae_contig1004:16321..164211691682788.17176-UTR-L-elsbetiae_contig1004:16321..16421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1004 16322..16421 +
1622815237.4253325-UTR-L-elsbetiae_contig1004:16766..176311622815237.4253325-UTR-L-elsbetiae_contig1004:16766..17631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1004 16767..17631 +
1691682788.1981432-UTR-L-elsbetiae_contig1004:16766..176311691682788.1981432-UTR-L-elsbetiae_contig1004:16766..17631Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1004 16767..17631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815237.4138584-CDS-L-elsbetiae_contig1004:16421..167661622815237.4138584-CDS-L-elsbetiae_contig1004:16421..16766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1004 16422..16766 +
1691682788.1832407-CDS-L-elsbetiae_contig1004:16421..167661691682788.1832407-CDS-L-elsbetiae_contig1004:16421..16766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1004 16422..16766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1004.88.1

>prot_L-elsbetiae_contig1004.88.1 ID=prot_L-elsbetiae_contig1004.88.1|Name=mRNA_L-elsbetiae_contig1004.88.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MVCCMDLDAVDWQGTPLHHARGKAEVHMLVNAGANIEARDRFGAIPLKMP
YVDVDAMRALVNHDANVNAQCNDGFTHLHHAFAHVQFPIVKQMPLPARGQ
GIQDSNVIEMVDLF*
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mRNA from alignment at L-elsbetiae_contig1004:16322..17631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1004.88.1 ID=mRNA_L-elsbetiae_contig1004.88.1|Name=mRNA_L-elsbetiae_contig1004.88.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1310bp|location=Sequence derived from alignment at L-elsbetiae_contig1004:16322..17631+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTCATGAGAGCTGGGGCGAGTACGATGATACGACACTTTTTCTGACA
AGACCCCGCTCACACGGGCCCGTGATTCCAGTGTGGAGGTCGCGTACAGG
ATGGTCTGCTGTATGGATCTCGATGCTGTTGATTGGCAGGGGACACCCCT
TCATCATGCTCGCGGGAAAGCTGAGGTCCATATGCTCGTCAATGCCGGGG
CCAATATCGAAGCTCGGGACAGATTTGGCGCCATCCCTCTCAAAATGCCC
TATGTTGACGTCGACGCGATGCGTGCCCTCGTGAACCATGACGCAAACGT
CAACGCACAATGCAATGACGGCTTCACGCATTTGCATCATGCGTTTGCGC
ACGTACAGTTCCCAATTGTAAAACAAATGCCACTACCAGCAAGAGGCCAA
GGAATCCAAGATAGCAACGTCATTGAGATGGTGGATCTCTTCTGAGGGCA
GGTGCGGACGAGACCATGGACAACATCCACGGCGAGACAGCGCTGGACAC
AGTTCCCAGAACTTGGGGAGTGCTGGATTCGAGCCTACAGTATATACTTT
TTCGTCCACCGCCCGAGGAACAGGAAACACTTCACGTGTACAAAACGACG
TTCGCGCGTACGTGTTGTTGAAAAATGCTCCCCCCGACAGGTTTTTTCGT
CGCTGTTCGTTTTGTAACCCCTGGTGCGGTATGTCTGGCCCGGCATGGAG
TACAGTTGCGGCCCGGAGATAAGAAACGTCAAAATCGGTTCGAGGCTCAG
TTTCTTATTTCATCACCACCGTTGAGCACAGGTCATTATATAGAGTTTAG
GGTAGGATCCACGACTCAGCTATGTTTCGTGGCCCTTTTTTCTTATTTTT
CGTGAAAAGTTGAGCCTGATTTTCTCAACTAATTTTTTCGTAGTAGCGGG
CCGCAACTGTATCGCAATGTAGGGATGTGGAGGATAGCCTGTTTTGTTTT
TTTGGAACGGAGGCCACAGGTAGAACTTGCGTCTTGCTCTTGAGATCCCC
CACGTGTTTGTAGGTATGTGAAGGGGCAGGCCTGACCGGTGTAAACCCGG
CGGAGAGTACTCTACCCGGCCTAGTACGCGTACAAGGATAGAATCATGTG
ATTGTATTGGCATTTCGTTTTGGTTTGTTTGATTTTTTTGCTGCTTGGCT
TGGCGTGTCGAGCGAGAGCGGTGGGCTCGATCTATTTCCTTCGTCAGTCC
GAATGGCCGCCAGCGACAGATTTCTTTTTGTCTTTCCTTTGATTTTTGTG
TAATTTACCCTATTTACGGGTAGTTTGAATGTGACGATGGAAGGCGGTCG
CATCAGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1004:16322..17631+

>mRNA_L-elsbetiae_contig1004.88.1 ID=mRNA_L-elsbetiae_contig1004.88.1|Name=mRNA_L-elsbetiae_contig1004.88.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig1004:16322..17631+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCTGCTGTATGGATCTCGATGCTGTTGATTGGCAGGGGACACCCCT
TCATCATGCTCGCGGGAAAGCTGAGGTCCATATGCTCGTCAATGCCGGGG
CCAATATCGAAGCTCGGGACAGATTTGGCGCCATCCCTCTCAAAATGCCC
TATGTTGACGTCGACGCGATGCGTGCCCTCGTGAACCATGACGCAAACGT
CAACGCACAATGCAATGACGGCTTCACGCATTTGCATCATGCGTTTGCGC
ACGTACAGTTCCCAATTGTAAAACAAATGCCACTACCAGCAAGAGGCCAA
GGAATCCAAGATAGCAACGTCATTGAGATGGTGGATCTCTTCTGAATGGT
CTGCTGTATGGATCTCGATGCTGTTGATTGGCAGGGGACACCCCTTCATC
ATGCTCGCGGGAAAGCTGAGGTCCATATGCTCGTCAATGCCGGGGCCAAT
ATCGAAGCTCGGGACAGATTTGGCGCCATCCCTCTCAAAATGCCCTATGT
TGACGTCGACGCGATGCGTGCCCTCGTGAACCATGACGCAAACGTCAACG
CACAATGCAATGACGGCTTCACGCATTTGCATCATGCGTTTGCGCACGTA
CAGTTCCCAATTGTAAAACAAATGCCACTACCAGCAAGAGGCCAAGGAAT
CCAAGATAGCAACGTCATTGAGATGGTGGATCTCTTCTGA
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