mRNA_L-elsbetiae_contig1004.86.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 524 bits (1350), Expect = 1.900e-181 Identity = 261/280 (93.21%), Postives = 269/280 (96.07%), Query Frame = 1 Query: 28 AQSAVRRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQEELEAVSSTPHVTERQEKGSDGNGEGDIEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLEDRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDAIDRANRSGDDTDPESKMKISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANFW 867 +QSA RRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQ ELEA SSTPHVTERQE+GSDGNGEGDIEIS+GVYYKRAELR LQYYYDKSYAFDPKNIGVVL ETGVKID RIH VKSVDHGK+TLE RESRITQWELL+NRCDE VTLDTDLRRFILHLVTKY VMMGSVVPALSGV+TGMLWNPNDAIDRA+RSGDDTDPE KMKISELMSIKVRVDTLRDLSLAVFTKIP+EATLGANFW Sbjct: 3 SQSAARRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQAELEAASSTPHVTERQEEGSDGNGEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSGVVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATLGANFW 282
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 370 bits (950), Expect = 2.470e-116 Identity = 217/401 (54.11%), Postives = 232/401 (57.86%), Query Frame = 1 Query: 43 RRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQEELEAVSSTPHVTERQEKGSDGN------------------------------------------------------------------------------------------------------------------------------------------------GEGDIEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLEDRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDAIDRANRSGDDTDPESKMKISELMSIKVRVDTLRDLS 813 RR GRNRTATVPGKMPTGADKKDQDHDHWRKREA WAGWG Q+A DKKMA+TKEKRD AREVHEANQKKR+E+LEA SSTPHVTERQE+GS GN G+GDIEIS+GVYYKRAELRNLQYYYDKSY DP+NI VV G+T VKIDG +HVVKSVDHGK+TLE RES ITQWELL+ RCDEGVTL TDLRRFILHLVTKY VMMGSVVPAL+GVLT MLWNPNDA+ AN+ GDDTDPES MK SELMSIK RVDTLRDLS Sbjct: 20 RRSGRNRTATVPGKMPTGADKKDQDHDHWRKREAEWAGWGVQKASDKKMADTKEKRDDAREVHEANQKKREEDLEATSSTPHVTERQEEGSLGNRAKTTAAAIPEDNRLEAMDVDGVGGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTWNGGGPVRKVAYKQRPKLYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTGVLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDLS 418
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI) HSP 1 Score: 291 bits (745), Expect = 7.280e-96 Identity = 146/197 (74.11%), Postives = 163/197 (82.74%), Query Frame = 1 Query: 28 AQSAVRRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQEELEAVSSTPHVTERQEKGSDGNGEGDIEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLEDRESRITQWELLKNRCDEGVTLDTDLRRFILHL 618 +QSA RG RNR A M TGA K+D+DHDHW+ REAVWA W DQEAYDKKMAETK++RDAAR VHEA QK++QEELEA SST HVTERQEK SDGNGE DIEI EGVY+KR E+R+L+YYYDKSY FDPK+IGVV GET V+IDG +HVVKSVD GK+ LE +S ITQWELL NRC EGVTLDTDLRRFI HL Sbjct: 3 SQSATGRGQRNRRARDLDAMQTGAGKQDEDHDHWQAREAVWASWADQEAYDKKMAETKDRRDAARTVHEAKQKEKQEELEAASSTSHVTERQEKVSDGNGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE) HSP 1 Score: 199 bits (505), Expect = 7.420e-54 Identity = 108/219 (49.32%), Postives = 143/219 (65.30%), Query Frame = 1 Query: 316 DGNGEGDIEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLEDRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALS--GVLT-GMLWNPNDAIDRANRSGDDTDPES-KMKISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANFWSDRHDESLKDFAAQPGSLSQLNFLGGLGCVA 960 D + +++++ V +KR+EL L+YY+DK+Y F+P +I VV+G T VKIDGRI VV+S DHGK+ L + ITQWELL+NR EG TLD +LRRFI+ Y VMM VP G+ T GMLWN +A++RA D+ D ES KM + EL S++ + +R LSL +FT +P+ TL NFW D SL+DFA GSLSQLN L GLGC + Sbjct: 193 DASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLPKNFWGGAVDGSLRDFAEGSGSLSQLNCLKGLGCAS 410
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI) HSP 1 Score: 169 bits (427), Expect = 4.300e-43 Identity = 97/241 (40.25%), Postives = 151/241 (62.66%), Query Frame = 1 Query: 268 AVSSTPHVTERQEKGSDGNGEGDIEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLEDRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPAL-----SGVLTGMLWNPNDAIDRANRSGDDTDPESKMKISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANFWSDRHDESLKDFAAQPGSLSQLNFLGGLGCVADDDLV 975 +++S P + + +G + IEI +GV++KRA L L+ Y++ Y FDP++IGV LG T V ID VV+S D G+++L D S + QW +L+NR D GVTL+ + RRFI+HLVT Y MM VVP + ++ M+WNP +A R +T+ E + ++ ++++ RV+TLRDL+L +FT ++ TL A+FW +E L++FA + GSL ++NFLG L CV + ++V Sbjct: 732 SITSIPLIAKLLTRGLCDDPLDGIEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDG-SVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKR------ETNKERREELDQIIN---RVNTLRDLTLRIFTGAAVKDTLPASFWDVEGNEELREFAEEAGSLKKINFLGRLECVHNREVV 962
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59) HSP 1 Score: 128 bits (322), Expect = 1.010e-30 Identity = 67/167 (40.12%), Postives = 101/167 (60.48%), Query Frame = 1 Query: 337 IEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLEDRESRITQWELLKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSG---VLTGMLWNPNDAIDRANRSGDDTDPESKMKISELMSIKVRVDTLRDLSLAVFT 828 IEI EGVY+ R+ ++ Y+ YAFDP +IGV +G T V ++ V++ D+G +TL D++S++TQW++L+NR GVTL+ DLRR+I LV Y VM + VP + V GM+ + + A +S D D S++ EL+ IK D +RD +L +FT Sbjct: 167 IEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFT 333
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: A0A6H5JU26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU26_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.490e-21 Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 1 Query: 85 MPTGADKKDQDHDHWRKREAVWAGWGDQEAYDKKMAETKEKRDAAREVHEANQKKRQ 255 MPTGA KKDQDHDHW REAVWAGWG QEAYDKKMAETKE+RDAARE HE +K++Q Sbjct: 1 MPTGAGKKDQDHDHWPLREAVWAGWGYQEAYDKKMAETKERRDAAREAHEIKRKEKQ 57
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: A0A6H5JFX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 3.600e-17 Identity = 52/104 (50.00%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 553 LKNRCDEGVTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDAIDRANRSGDDTDPESKMKISELMSIKVRVDTLRDLSLAVFTKIPMEATLGANF 864 ++ RCDEG++LDT+LRR ANRSG TDPES MK SELMSIKVRVDTLRD+SLAVFTKI +++TLGANF Sbjct: 75 VETRCDEGLSLDTNLRR-------------------------------------ANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFTKILIQSTLGANF 141
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 3.700e-10 Identity = 63/213 (29.58%), Postives = 104/213 (48.83%), Query Frame = 1 Query: 337 IEISEGVYYKRAELRNLQYYYDKSYAFDPKNIGVVLGETGVKIDGRIHVVKSVDHGKFTLED----RESRITQWELLKNRCDEG---VTLDTDLRRFILHLVTKYAVMMGSVVPALSGVLTGMLWNPNDA--IDRANRSGDDTDPESKMKISELMSIKVRVDTLRDLSLAVFTKIPM-EATLGANF--WSDRHDESLKDFAAQPGSLSQLNFL 939 +E + VY+ + + Y+ +P +IG+++GET VK+DG + V SV+ G ++L + QWE+L+NR +G TL+ D R+F + L+ +Y M ++VP L+ G P + +N + TD + L + V T R L+ A K+ M +A G F + D+ L+ FA + GSL +LN L Sbjct: 163 LEDLDEVYFN-VGTKGFKESYNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVPYLNH---GQAAIPEGEGRVQVSNMTYKMTDVSGE----GLAARHEDVMTARSLTKAALKKLKMVDAIDGLRFPGLAQEGDDDLRTFAEREGSLGELNGL 367 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1004.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1004.86.1 >prot_L-elsbetiae_contig1004.86.1 ID=prot_L-elsbetiae_contig1004.86.1|Name=mRNA_L-elsbetiae_contig1004.86.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=325bp MYPFPITWFAQSAVRRGGRNRTATVPGKMPTGADKKDQDHDHWRKREAVWback to top mRNA from alignment at L-elsbetiae_contig1004:9818..11449+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1004.86.1 ID=mRNA_L-elsbetiae_contig1004.86.1|Name=mRNA_L-elsbetiae_contig1004.86.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1632bp|location=Sequence derived from alignment at L-elsbetiae_contig1004:9818..11449+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1004:9818..11449+ >mRNA_L-elsbetiae_contig1004.86.1 ID=mRNA_L-elsbetiae_contig1004.86.1|Name=mRNA_L-elsbetiae_contig1004.86.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig1004:9818..11449+ (Laminarionema elsbetiae ELsaHSoW15)back to top |