mRNA_L-elsbetiae_contig10.5.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.5.1
Unique NamemRNA_L-elsbetiae_contig10.5.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: D1J766_ECTSI (50S ribosomal protein L20, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J766_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.670e-62
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339
            MVRVKRGNVARKRRNKILKLAKGFCG+HSSLFRIANQQVIKSLLYAYSGRK KKRVFR+LWITR+NAAVK Y+LKYNEF+HNLKKSKI+LNRKMLSQLAILDP AFSALV  T
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFCGSHSSLFRIANQQVIKSLLYAYSGRKKKKRVFRQLWITRINAAVKHYNLKYNEFIHNLKKSKIILNRKMLSQLAILDPPAFSALVFAT 113          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A0R6M3F2_UNDPI (50S ribosomal protein L20, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M3F2_UNDPI)

HSP 1 Score: 184 bits (468), Expect = 1.730e-58
Identity = 94/113 (83.19%), Postives = 106/113 (93.81%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339
            MVRVKRGNVAR RRNKILKLAKGFCGAHSSLFR+ANQQVIKSL+YAY GRK KKR+FR+LWITR+NAAV  Y+LKY++F+HNLK+SKILLNRKMLSQLAILDPSAFS++V  T
Sbjct:    1 MVRVKRGNVARNRRNKILKLAKGFCGAHSSLFRVANQQVIKSLIYAYRGRKEKKRIFRQLWITRINAAVSNYNLKYSKFIHNLKRSKILLNRKMLSQLAILDPSAFSSIVKLT 113          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8F0FB19_9PHAE (50S ribosomal protein L20 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB19_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.170e-56
Identity = 91/113 (80.53%), Postives = 105/113 (92.92%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339
            MVRVKRGNVAR RRNKIL+LAKGFCGAHSSLFRIANQQVIKSL+Y+Y GRK KKR+FR+LWITR+NAA ++Y+LKY+ F+HNLK+SK+LLNRKMLSQLAILDPSAFS +V  T
Sbjct:    1 MVRVKRGNVARNRRNKILRLAKGFCGAHSSLFRIANQQVIKSLVYSYIGRKEKKRIFRQLWITRINAAARQYNLKYSRFIHNLKRSKVLLNRKMLSQLAILDPSAFSYIVEAT 113          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8F0JZA2_9PHAE (50S ribosomal protein L20 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JZA2_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.940e-55
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339
            MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSL+YAY GRK KKR+FR+LWITR+NAA   Y+L Y+ F+HNLK++K+LLNRKMLSQLAILDP AFS +V  T
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLIYAYRGRKEKKRMFRQLWITRINAAASYYNLNYSRFIHNLKQAKVLLNRKMLSQLAILDPPAFSFIVEAT 113          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: D1GJI6_FUCVE (50S ribosomal protein L20, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJI6_FUCVE)

HSP 1 Score: 167 bits (422), Expect = 1.780e-51
Identity = 86/113 (76.11%), Postives = 102/113 (90.27%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339
            MVRVKRGNVARKRRNKILKLAKGF GA SSLFRIANQQVIKSL+Y+Y GRK KKR+FR+LWITR+N++ ++Y++KYN F++ LK+SKILLNRKMLSQLAILDP AFS ++  T
Sbjct:    1 MVRVKRGNVARKRRNKILKLAKGFNGAQSSLFRIANQQVIKSLVYSYIGRKEKKRIFRKLWITRINSSTRQYNIKYNRFIYKLKQSKILLNRKMLSQLAILDPLAFSNIIEIT 113          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8E5XRD5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD5_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.580e-51
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVS 333
            MVR+KRGNVARKRR KIL LAKGFCG+HSSLFR+ANQQV+KSLLYAY GRK KKR+FR+LWITR+N AV+ Y   Y++F H+LK S ILLNRKMLSQLAI+DPS FS+LVS
Sbjct:    1 MVRIKRGNVARKRRKKILNLAKGFCGSHSSLFRVANQQVLKSLLYAYIGRKEKKRMFRQLWITRINGAVRNYGTNYSKFTHSLKVSNILLNRKMLSQLAIIDPSGFSSLVS 111          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A1N7TJI7_9PHAE (50S ribosomal protein L20 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.180e-50
Identity = 85/113 (75.22%), Postives = 101/113 (89.38%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339
            MVRVKRGNVARKRR KILKLA+GF G  SSLFRIANQQV+KSL+YAY GRK KKRVFR+LWITR+N++ ++Y++KY+ F++ LK+SKILLNRKMLSQLAILDPSAFS L+  T
Sbjct:    1 MVRVKRGNVARKRRKKILKLAQGFRGPQSSLFRIANQQVMKSLVYAYIGRKKKKRVFRKLWITRINSSTRQYNMKYSHFIYKLKQSKILLNRKMLSQLAILDPSAFSNLIKVT 113          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8E5BDH4_9PHAE (Ribosomal protein L20 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BDH4_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.740e-50
Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTTG 342
            M+RVKRGN+ARKRR KILKLAKGF G HSSLFR+ANQQV+KSL YAY GRK KKRVFR+LWI+R+NAAV+KYD+ Y+EF+  LKK  ILLNRKMLSQ+AILDP +F  L++  G
Sbjct:    1 MIRVKRGNIARKRRKKILKLAKGFAGTHSSLFRVANQQVLKSLTYAYVGRKKKKRVFRQLWISRINAAVRKYDITYSEFIFKLKKKNILLNRKMLSQIAILDPISFLKLLNVIG 114          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A2I4Q2E5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 1.700e-49
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVS 333
            MVRVKRGN+ARKRRNKILK AKGF GAHS+ FRIANQQV+KSL Y Y GRK KKRVFR+LWI R+NAAVKKYDL Y++F+  LK++ ILLNRKMLSQLAILDP AFS+L++
Sbjct:    1 MVRVKRGNIARKRRNKILKRAKGFFGAHSNSFRIANQQVLKSLRYEYVGRKTKKRVFRQLWIIRINAAVKKYDLCYSQFIFKLKQASILLNRKMLSQLAILDPKAFSSLIA 111          
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8F0JXR7_9PHAE (50S ribosomal protein L20 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXR7_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 6.460e-49
Identity = 80/110 (72.73%), Postives = 99/110 (90.00%), Query Frame = 1
Query:    1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALV 330
            MVRVKRGNVARKRRNKIL  AKGFCGAHSS FR+ANQQVIKS LY Y GRK KKR+FR+LWITR+NAA ++Y+++Y+ F++ +K+++ILLNRKMLSQLAILDP +FS++V
Sbjct:    1 MVRVKRGNVARKRRNKILNFAKGFCGAHSSSFRVANQQVIKSFLYGYIGRKKKKRIFRQLWITRINAASRQYNIRYSRFIYFMKQARILLNRKMLSQLAILDPFSFSSMV 110          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J766_ECTSI2.670e-6290.2750S ribosomal protein L20, chloroplastic n=9 Tax=E... [more]
A0A0R6M3F2_UNDPI1.730e-5883.1950S ribosomal protein L20, chloroplastic n=26 Tax=... [more]
A0A8F0FB19_9PHAE1.170e-5680.5350S ribosomal protein L20 n=1 Tax=Desmarestia acul... [more]
A0A8F0JZA2_9PHAE1.940e-5580.5350S ribosomal protein L20 n=2 Tax=Laminariales Tax... [more]
D1GJI6_FUCVE1.780e-5176.1150S ribosomal protein L20, chloroplastic n=3 Tax=F... [more]
A0A8E5XRD5_9PHAE3.580e-5176.5850S ribosomal protein L20, chloroplastic n=1 Tax=I... [more]
A0A1N7TJI7_9PHAE4.180e-5075.2250S ribosomal protein L20 n=1 Tax=Coccophora langs... [more]
A0A8E5BDH4_9PHAE4.740e-5072.81Ribosomal protein L20 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A2I4Q2E5_9PHAE1.700e-4976.5850S ribosomal protein L20, chloroplastic n=1 Tax=D... [more]
A0A8F0JXR7_9PHAE6.460e-4972.7350S ribosomal protein L20 n=1 Tax=Protohalopteris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:9382..9726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score195.3
Seed ortholog evalue1.6e-47
Seed eggNOG ortholog2880.D1J766
Preferred namerpl20
KEGG koko:K02887
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0009987,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0031967,GO:0031975,GO:0034622,GO:0042254,GO:0042255,GO:0042273,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0292@1,KOG4707@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815231.5415692-CDS-L-elsbetiae_contig10:9381..97261622815231.5415692-CDS-L-elsbetiae_contig10:9381..9726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 9382..9726 +
1691682783.6499276-CDS-L-elsbetiae_contig10:9381..97261691682783.6499276-CDS-L-elsbetiae_contig10:9381..9726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 9382..9726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.5.1prot_L-elsbetiae_contig10.5.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 9382..9726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.5.1

>prot_L-elsbetiae_contig10.5.1 ID=prot_L-elsbetiae_contig10.5.1|Name=mRNA_L-elsbetiae_contig10.5.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGR
KMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAI
LDPSAFSALVSTTG*
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mRNA from alignment at L-elsbetiae_contig10:9382..9726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.5.1 ID=mRNA_L-elsbetiae_contig10.5.1|Name=mRNA_L-elsbetiae_contig10.5.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig10:9382..9726+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTAGAGTCAAACGAGGTAATGTTGCTAGAAAGCGTAGGAACAAAAT TTTAAAACTTGCAAAAGGGTTTTGCGGCGCTCATTCAAGCTTATTTCGGA TTGCAAACCAACAAGTAATAAAAAGTTTGTTATATGCGTATAGTGGAAGA AAAATGAAAAAAAGAGTATTTCGTCGGTTATGGATTACTAGAATGAATGC AGCGGTTAAAAAGTATGACTTAAAGTATAATGAGTTTGTACATAACTTAA AAAAATCTAAAATCCTTTTAAACCGTAAAATGTTATCACAATTGGCTATT TTGGATCCATCAGCTTTTTCAGCTTTAGTTTCAACAACGGGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:9382..9726+

>mRNA_L-elsbetiae_contig10.5.1 ID=mRNA_L-elsbetiae_contig10.5.1|Name=mRNA_L-elsbetiae_contig10.5.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig10:9382..9726+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTAGAGTCAAACGAGGTAATGTTGCTAGAAAGCGTAGGAACAAAAT
TTTAAAACTTGCAAAAGGGTTTTGCGGCGCTCATTCAAGCTTATTTCGGA
TTGCAAACCAACAAGTAATAAAAAGTTTGTTATATGCGTATAGTGGAAGA
AAAATGAAAAAAAGAGTATTTCGTCGGTTATGGATTACTAGAATGAATGC
AGCGGTTAAAAAGTATGACTTAAAGTATAATGAGTTTGTACATAACTTAA
AAAAATCTAAAATCCTTTTAAACCGTAAAATGTTATCACAATTGGCTATT
TTGGATCCATCAGCTTTTTCAGCTTTAGTTTCAACAACGGGATAAATGGT
TAGAGTCAAACGAGGTAATGTTGCTAGAAAGCGTAGGAACAAAATTTTAA
AACTTGCAAAAGGGTTTTGCGGCGCTCATTCAAGCTTATTTCGGATTGCA
AACCAACAAGTAATAAAAAGTTTGTTATATGCGTATAGTGGAAGAAAAAT
GAAAAAAAGAGTATTTCGTCGGTTATGGATTACTAGAATGAATGCAGCGG
TTAAAAAGTATGACTTAAAGTATAATGAGTTTGTACATAACTTAAAAAAA
TCTAAAATCCTTTTAAACCGTAAAATGTTATCACAATTGGCTATTTTGGA
TCCATCAGCTTTTTCAGCTTTAGTTTCAACAACGGGATAA
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