mRNA_L-elsbetiae_contig10.5.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: D1J766_ECTSI (50S ribosomal protein L20, chloroplastic n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J766_ECTSI) HSP 1 Score: 194 bits (493), Expect = 2.670e-62 Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339 MVRVKRGNVARKRRNKILKLAKGFCG+HSSLFRIANQQVIKSLLYAYSGRK KKRVFR+LWITR+NAAVK Y+LKYNEF+HNLKKSKI+LNRKMLSQLAILDP AFSALV T Sbjct: 1 MVRVKRGNVARKRRNKILKLAKGFCGSHSSLFRIANQQVIKSLLYAYSGRKKKKRVFRQLWITRINAAVKHYNLKYNEFIHNLKKSKIILNRKMLSQLAILDPPAFSALVFAT 113
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A0R6M3F2_UNDPI (50S ribosomal protein L20, chloroplastic n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M3F2_UNDPI) HSP 1 Score: 184 bits (468), Expect = 1.730e-58 Identity = 94/113 (83.19%), Postives = 106/113 (93.81%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339 MVRVKRGNVAR RRNKILKLAKGFCGAHSSLFR+ANQQVIKSL+YAY GRK KKR+FR+LWITR+NAAV Y+LKY++F+HNLK+SKILLNRKMLSQLAILDPSAFS++V T Sbjct: 1 MVRVKRGNVARNRRNKILKLAKGFCGAHSSLFRVANQQVIKSLIYAYRGRKEKKRIFRQLWITRINAAVSNYNLKYSKFIHNLKRSKILLNRKMLSQLAILDPSAFSSIVKLT 113
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8F0FB19_9PHAE (50S ribosomal protein L20 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB19_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.170e-56 Identity = 91/113 (80.53%), Postives = 105/113 (92.92%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339 MVRVKRGNVAR RRNKIL+LAKGFCGAHSSLFRIANQQVIKSL+Y+Y GRK KKR+FR+LWITR+NAA ++Y+LKY+ F+HNLK+SK+LLNRKMLSQLAILDPSAFS +V T Sbjct: 1 MVRVKRGNVARNRRNKILRLAKGFCGAHSSLFRIANQQVIKSLVYSYIGRKEKKRIFRQLWITRINAAARQYNLKYSRFIHNLKRSKVLLNRKMLSQLAILDPSAFSYIVEAT 113
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8F0JZA2_9PHAE (50S ribosomal protein L20 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0JZA2_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.940e-55 Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSL+YAY GRK KKR+FR+LWITR+NAA Y+L Y+ F+HNLK++K+LLNRKMLSQLAILDP AFS +V T Sbjct: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLIYAYRGRKEKKRMFRQLWITRINAAASYYNLNYSRFIHNLKQAKVLLNRKMLSQLAILDPPAFSFIVEAT 113
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: D1GJI6_FUCVE (50S ribosomal protein L20, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJI6_FUCVE) HSP 1 Score: 167 bits (422), Expect = 1.780e-51 Identity = 86/113 (76.11%), Postives = 102/113 (90.27%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339 MVRVKRGNVARKRRNKILKLAKGF GA SSLFRIANQQVIKSL+Y+Y GRK KKR+FR+LWITR+N++ ++Y++KYN F++ LK+SKILLNRKMLSQLAILDP AFS ++ T Sbjct: 1 MVRVKRGNVARKRRNKILKLAKGFNGAQSSLFRIANQQVIKSLVYSYIGRKEKKRIFRKLWITRINSSTRQYNIKYNRFIYKLKQSKILLNRKMLSQLAILDPLAFSNIIEIT 113
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8E5XRD5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD5_9PHAE) HSP 1 Score: 166 bits (420), Expect = 3.580e-51 Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVS 333 MVR+KRGNVARKRR KIL LAKGFCG+HSSLFR+ANQQV+KSLLYAY GRK KKR+FR+LWITR+N AV+ Y Y++F H+LK S ILLNRKMLSQLAI+DPS FS+LVS Sbjct: 1 MVRIKRGNVARKRRKKILNLAKGFCGSHSSLFRVANQQVLKSLLYAYIGRKEKKRMFRQLWITRINGAVRNYGTNYSKFTHSLKVSNILLNRKMLSQLAIIDPSGFSSLVS 111
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A1N7TJI7_9PHAE (50S ribosomal protein L20 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1N7TJI7_9PHAE) HSP 1 Score: 163 bits (413), Expect = 4.180e-50 Identity = 85/113 (75.22%), Postives = 101/113 (89.38%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTT 339 MVRVKRGNVARKRR KILKLA+GF G SSLFRIANQQV+KSL+YAY GRK KKRVFR+LWITR+N++ ++Y++KY+ F++ LK+SKILLNRKMLSQLAILDPSAFS L+ T Sbjct: 1 MVRVKRGNVARKRRKKILKLAQGFRGPQSSLFRIANQQVMKSLVYAYIGRKKKKRVFRKLWITRINSSTRQYNMKYSHFIYKLKQSKILLNRKMLSQLAILDPSAFSNLIKVT 113
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8E5BDH4_9PHAE (Ribosomal protein L20 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BDH4_9PHAE) HSP 1 Score: 163 bits (413), Expect = 4.740e-50 Identity = 83/114 (72.81%), Postives = 98/114 (85.96%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVSTTG 342 M+RVKRGN+ARKRR KILKLAKGF G HSSLFR+ANQQV+KSL YAY GRK KKRVFR+LWI+R+NAAV+KYD+ Y+EF+ LKK ILLNRKMLSQ+AILDP +F L++ G Sbjct: 1 MIRVKRGNIARKRRKKILKLAKGFAGTHSSLFRVANQQVLKSLTYAYVGRKKKKRVFRQLWISRINAAVRKYDITYSEFIFKLKKKNILLNRKMLSQIAILDPISFLKLLNVIG 114
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A2I4Q2E5_9PHAE (50S ribosomal protein L20, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E5_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.700e-49 Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALVS 333 MVRVKRGN+ARKRRNKILK AKGF GAHS+ FRIANQQV+KSL Y Y GRK KKRVFR+LWI R+NAAVKKYDL Y++F+ LK++ ILLNRKMLSQLAILDP AFS+L++ Sbjct: 1 MVRVKRGNIARKRRNKILKRAKGFFGAHSNSFRIANQQVLKSLRYEYVGRKTKKRVFRQLWIIRINAAVKKYDLCYSQFIFKLKQASILLNRKMLSQLAILDPKAFSSLIA 111
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Match: A0A8F0JXR7_9PHAE (50S ribosomal protein L20 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXR7_9PHAE) HSP 1 Score: 160 bits (406), Expect = 6.460e-49 Identity = 80/110 (72.73%), Postives = 99/110 (90.00%), Query Frame = 1 Query: 1 MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRKMKKRVFRRLWITRMNAAVKKYDLKYNEFVHNLKKSKILLNRKMLSQLAILDPSAFSALV 330 MVRVKRGNVARKRRNKIL AKGFCGAHSS FR+ANQQVIKS LY Y GRK KKR+FR+LWITR+NAA ++Y+++Y+ F++ +K+++ILLNRKMLSQLAILDP +FS++V Sbjct: 1 MVRVKRGNVARKRRNKILNFAKGFCGAHSSSFRVANQQVIKSFLYGYIGRKKKKRIFRQLWITRINAASRQYNIRYSRFIYFMKQARILLNRKMLSQLAILDPFSFSSMV 110 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10.5.1 >prot_L-elsbetiae_contig10.5.1 ID=prot_L-elsbetiae_contig10.5.1|Name=mRNA_L-elsbetiae_contig10.5.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp MVRVKRGNVARKRRNKILKLAKGFCGAHSSLFRIANQQVIKSLLYAYSGRback to top mRNA from alignment at L-elsbetiae_contig10:9382..9726+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10.5.1 ID=mRNA_L-elsbetiae_contig10.5.1|Name=mRNA_L-elsbetiae_contig10.5.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=345bp|location=Sequence derived from alignment at L-elsbetiae_contig10:9382..9726+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10:9382..9726+ >mRNA_L-elsbetiae_contig10.5.1 ID=mRNA_L-elsbetiae_contig10.5.1|Name=mRNA_L-elsbetiae_contig10.5.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig10:9382..9726+ (Laminarionema elsbetiae ELsaHSoW15)back to top |