mRNA_L-elsbetiae_contig10.20.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10.20.1
Unique NamemRNA_L-elsbetiae_contig10.20.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_GALSU (ATP synthase subunit c, chloroplastic n=4 Tax=Rhodophyta TaxID=2763 RepID=ATPH_GALSU)

HSP 1 Score: 134 bits (337), Expect = 1.720e-39
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 246
            MDSI+SAASVIAAGLAVGLAAIGPGIGQGTA+ QAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVAL+LLFANPF N
Sbjct:    1 MDSIISAASVIAAGLAVGLAAIGPGIGQGTASAQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFIN 82
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: H2EV64_9STRA (ATP synthase subunit c, chloroplastic n=1 Tax=Ulnaria acus TaxID=1436140 RepID=H2EV64_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.370e-39
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 246
            MDSIVSAASVIAAGL++GL+AIGPGIGQG AAGQAVEGIARQPEAE+KIRGTLLLS AFMEALTIYGLVVALALLFANPF +
Sbjct:    1 MDSIVSAASVIAAGLSIGLSAIGPGIGQGNAAGQAVEGIARQPEAESKIRGTLLLSLAFMEALTIYGLVVALALLFANPFNS 82
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: C6KIJ2_AURAN (ATP synthase subunit c, chloroplastic n=4 Tax=Ochrophyta TaxID=2696291 RepID=C6KIJ2_AURAN)

HSP 1 Score: 132 bits (332), Expect = 9.660e-39
Identity = 73/82 (89.02%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 246
            MDSI++AASVI AGL+VGLAAIGPGIGQGTAAGQAVEGIARQPE EN+IRGTLLLS AFMEALTIYGLVVALALLFANPF  
Sbjct:    1 MDSIIAAASVIGAGLSVGLAAIGPGIGQGTAAGQAVEGIARQPEVENQIRGTLLLSLAFMEALTIYGLVVALALLFANPFAG 82
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: K9ZV94_9STRA (ATP synthase subunit c, chloroplastic n=18 Tax=Eustigmatophyceae TaxID=5747 RepID=K9ZV94_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.410e-38
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 1 
Query:    4 DSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFTN 246
            DSIVSAASVIAAG+AVGLAAIGPGIGQG AAGQAVEGIARQPEAE+KIRGTLLLS AFMEALTIYGLVVAL+L+FANPF++
Sbjct:    3 DSIVSAASVIAAGIAVGLAAIGPGIGQGNAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALSLIFANPFSS 83
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic n=530 Tax=Streptophytina TaxID=131221 RepID=ATPH_ARATH)

HSP 1 Score: 130 bits (328), Expect = 3.820e-38
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 240
            M+ +VSAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_AMBTC (ATP synthase subunit c, chloroplastic n=7777 Tax=Eukaryota TaxID=2759 RepID=ATPH_AMBTC)

HSP 1 Score: 130 bits (327), Expect = 5.430e-38
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 240
            M+ ++SAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: A0A199UTF9_ANACO (ATP synthase subunit C, plastid n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UTF9_ANACO)

HSP 1 Score: 130 bits (327), Expect = 1.040e-37
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 240
            M+ ++SAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:   23 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 102
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_PEA (ATP synthase subunit c, chloroplastic n=300 Tax=cellular organisms TaxID=131567 RepID=ATPH_PEA)

HSP 1 Score: 129 bits (325), Expect = 1.100e-37
Identity = 71/80 (88.75%), Postives = 78/80 (97.50%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 240
            M+ +++AASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE+KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 80
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BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: ATPH_DIALT (ATP synthase subunit c, chloroplastic n=8 Tax=Eukaryota TaxID=2759 RepID=ATPH_DIALT)

HSP 1 Score: 129 bits (325), Expect = 1.160e-37
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPFT 243
            M+ I+SAASVIAAGL+VGLAAIGPGIGQG+AAGQA+EGIARQPEAE KIRGTLLLS AFMEALTIYGLVVAL+LLFANPFT
Sbjct:    1 MNPIISAASVIAAGLSVGLAAIGPGIGQGSAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALSLLFANPFT 81
[Close]
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Match: A0A7T8ZS27_9ROSA (ATP synthase subunit c, chloroplastic n=3 Tax=Urticaceae TaxID=3499 RepID=A0A7T8ZS27_9ROSA)

HSP 1 Score: 130 bits (327), Expect = 1.210e-37
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIRGTLLLSFAFMEALTIYGLVVALALLFANPF 240
            M+ ++SAASVIAAGLAVGLA+IGPG+GQGTAAGQAVEGIARQPEAE KIRGTLLLS AFMEALTIYGLVVALALLFANPF
Sbjct:   28 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 107
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ATPH_GALSU1.720e-3991.46ATP synthase subunit c, chloroplastic n=4 Tax=Rhod... [more]
H2EV64_9STRA3.370e-3990.24ATP synthase subunit c, chloroplastic n=1 Tax=Ulna... [more]
C6KIJ2_AURAN9.660e-3989.02ATP synthase subunit c, chloroplastic n=4 Tax=Ochr... [more]
K9ZV94_9STRA1.410e-3890.12ATP synthase subunit c, chloroplastic n=18 Tax=Eus... [more]
ATPH_ARATH3.820e-3891.25ATP synthase subunit c, chloroplastic n=530 Tax=St... [more]
ATPH_AMBTC5.430e-3890.00ATP synthase subunit c, chloroplastic n=7777 Tax=E... [more]
A0A199UTF9_ANACO1.040e-3790.00ATP synthase subunit C, plastid n=1 Tax=Ananas com... [more]
ATPH_PEA1.100e-3788.75ATP synthase subunit c, chloroplastic n=300 Tax=ce... [more]
ATPH_DIALT1.160e-3788.89ATP synthase subunit c, chloroplastic n=8 Tax=Euka... [more]
A0A7T8ZS27_9ROSA1.210e-3790.00ATP synthase subunit c, chloroplastic n=3 Tax=Urti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10contigL-elsbetiae_contig10:41021..41269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.2e-32
Seed eggNOG ortholog2880.D1J793
Preferred nameatpH
KEGG koko:K02110,ko:K02155,ko:K02919,ko:K02967
KEGG TC3.A.2.1,3.A.2.2
KEGG Pathwayko00190,ko00195,ko01100,ko03010,ko04142,ko04145,ko04721,ko04966,ko05110,ko05120,ko05152,ko05323,map00190,map00195,map01100,map03010,map04142,map04145,map04721,map04966,map05110,map05120,map05152,map05323
KEGG ModuleM00157,M00160,M00178,M00179
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0031976,GO:0031984,GO:0032991,GO:0033177,GO:0034220,GO:0034357,GO:0034641,GO:0034654,GO:0042623,GO:0042625,GO:0042626,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045259,GO:0045263,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG0232@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00194,ko03011
Exons1
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815232.1537595-CDS-L-elsbetiae_contig10:41020..412691622815232.1537595-CDS-L-elsbetiae_contig10:41020..41269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 41021..41269 +
1691682783.9851243-CDS-L-elsbetiae_contig10:41020..412691691682783.9851243-CDS-L-elsbetiae_contig10:41020..41269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10 41021..41269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10.20.1prot_L-elsbetiae_contig10.20.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10 41021..41269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10.20.1

>prot_L-elsbetiae_contig10.20.1 ID=prot_L-elsbetiae_contig10.20.1|Name=mRNA_L-elsbetiae_contig10.20.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MDSIVSAASVIAAGLAVGLAAIGPGIGQGTAAGQAVEGIARQPEAENKIR
GTLLLSFAFMEALTIYGLVVALALLFANPFTN*
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mRNA from alignment at L-elsbetiae_contig10:41021..41269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10.20.1 ID=mRNA_L-elsbetiae_contig10.20.1|Name=mRNA_L-elsbetiae_contig10.20.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=249bp|location=Sequence derived from alignment at L-elsbetiae_contig10:41021..41269+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTCTATTGTTTCTGCTGCATCTGTTATAGCTGCTGGTCTTGCTGT
TGGTTTAGCTGCAATTGGTCCAGGGATTGGACAAGGGACTGCTGCTGGTC
AAGCAGTTGAAGGTATCGCTCGTCAACCAGAAGCAGAAAATAAAATTCGT
GGTACTTTACTTCTAAGTTTTGCCTTTATGGAAGCGTTAACTATTTACGG
TTTAGTTGTAGCACTAGCTTTATTATTTGCAAACCCATTTACTAATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10:41021..41269+

>mRNA_L-elsbetiae_contig10.20.1 ID=mRNA_L-elsbetiae_contig10.20.1|Name=mRNA_L-elsbetiae_contig10.20.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig10:41021..41269+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATTCTATTGTTTCTGCTGCATCTGTTATAGCTGCTGGTCTTGCTGT
TGGTTTAGCTGCAATTGGTCCAGGGATTGGACAAGGGACTGCTGCTGGTC
AAGCAGTTGAAGGTATCGCTCGTCAACCAGAAGCAGAAAATAAAATTCGT
GGTACTTTACTTCTAAGTTTTGCCTTTATGGAAGCGTTAACTATTTACGG
TTTAGTTGTAGCACTAGCTTTATTATTTGCAAACCCATTTACTAATTAAA
TGGATTCTATTGTTTCTGCTGCATCTGTTATAGCTGCTGGTCTTGCTGTT
GGTTTAGCTGCAATTGGTCCAGGGATTGGACAAGGGACTGCTGCTGGTCA
AGCAGTTGAAGGTATCGCTCGTCAACCAGAAGCAGAAAATAAAATTCGTG
GTACTTTACTTCTAAGTTTTGCCTTTATGGAAGCGTTAACTATTTACGGT
TTAGTTGTAGCACTAGCTTTATTATTTGCAAACCCATTTACTAATTAA
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