mRNA_L-digitata_M_contig10180.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10180.1.1
Unique NamemRNA_L-digitata_M_contig10180.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 8.900e-65
Identity = 105/111 (94.59%), Postives = 110/111 (99.10%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAFYQFAAQ RFDKKVKGLSLGQGQGLKATRLIEEA+QKGTWVYLQNCHLYISWLAELER+CE+LSP+TVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA
Sbjct: 3608 SDPTKAFYQFAAQMRFDKKVKGLSLGQGQGLKATRLIEEASQKGTWVYLQNCHLYISWLAELERMCEELSPETVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 3718          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A6H5JN05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN05_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 3.060e-64
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTK FYQFAAQ RFDKKVKGLSLGQGQGLKATRLIEEA+QKGTWVYLQNCHLYISWLAELER+CE+LSP+TVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA
Sbjct: 2791 SDPTKVFYQFAAQMRFDKKVKGLSLGQGQGLKATRLIEEASQKGTWVYLQNCHLYISWLAELERMCEELSPETVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 2901          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S1U4X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4X8_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.270e-57
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAFY+FAAQ  FDKKVK LSLGQGQG KA RLIEE  Q+GTWVYLQNCHL+ISWL ELERLCE  SPDT HKDFRLWLTSMPC +FPVSILQNGVKMTNEPPKGLKA
Sbjct:  625 SDPTKAFYEFAAQMHFDKKVKALSLGQGQGPKAVRLIEEGQQRGTWVYLQNCHLFISWLVELERLCEGFSPDTAHKDFRLWLTSMPCPQFPVSILQNGVKMTNEPPKGLKA 735          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S2CY64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CY64_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.180e-56
Identity = 82/111 (73.87%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAF+QFA   + DKK+  LSLGQGQG+KA RLIEE  QKGTWV+LQNCHLY+SWL +LE++CE+L+P+TVHKDFR+WLTS P   FPVSILQNG+KMTNEPPKGLKA
Sbjct:   50 SDPTKAFFQFATDMKMDKKIMPLSLGQGQGVKAERLIEEGVQKGTWVFLQNCHLYVSWLTQLEQMCEELTPETVHKDFRIWLTSAPADAFPVSILQNGIKMTNEPPKGLKA 160          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN)

HSP 1 Score: 196 bits (497), Expect = 1.280e-55
Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAF  F A+ RFDKKVK LSLGQGQG KAT++IEEATQKG+WVYLQNCHL+ISWL ELERLC+ LSPD  HKDFRLWLTSMPC +FPVSILQNGVKMTNEPPKGLKA
Sbjct: 3585 SDPTKAFNLFCAEMRFDKKVKKLSLGQGQGTKATKMIEEATQKGSWVYLQNCHLFISWLTELERLCDGLSPDATHKDFRLWLTSMPCGDFPVSILQNGVKMTNEPPKGLKA 3695          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A482RTD3_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTD3_9ARCH)

HSP 1 Score: 187 bits (474), Expect = 3.670e-54
Identity = 87/111 (78.38%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAF +FAA+ + D+KV+ LSLGQGQG KA ++IEEATQKG WV LQNCHLYISWL ELER+CE LSPD+VHKDFRLWLTSMPCKEFP S+LQ+ VKMTNEPPKGLKA
Sbjct:   10 SDPTKAFSEFAAKMKMDRKVRMLSLGQGQGPKAAKMIEEATQKGNWVLLQNCHLYISWLQELERICESLSPDSVHKDFRLWLTSMPCKEFPSSVLQSAVKMTNEPPKGLKA 120          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S2CY45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CY45_9STRA)

HSP 1 Score: 185 bits (470), Expect = 2.650e-52
Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DP KAF +FA + RFDKKVK LSLGQGQG KAT +I++ATQKG W YLQNCHL++SWL  LER+C++LSPDTVHKDFRLWLTSMP  +FPV+ILQNGVKMTNEPPKGLKA
Sbjct:  284 SDPAKAFLEFAKEMRFDKKVKMLSLGQGQGTKATNMIQDATQKGLWAYLQNCHLFLSWLTTLERICDELSPDTVHKDFRLWLTSMPSPKFPVAILQNGVKMTNEPPKGLKA 394          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S3H3N1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3N1_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.840e-52
Identity = 85/111 (76.58%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAF +FA +++ D+KV+ LSLGQGQG KA ++IEEATQKG WV LQNCHLYISWL ELER+CE+LS D+VHKDFRLWLTSMPCKEFP S+LQ+ VKMTNEPPKGLKA
Sbjct:   83 SDPTKAFSEFAVKQKMDRKVRMLSLGQGQGPKAVKMIEEATQKGNWVLLQNCHLYISWLQELERICENLSGDSVHKDFRLWLTSMPCKEFPSSVLQSSVKMTNEPPKGLKA 193          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.030e-51
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTK FYQFAAQ  F+K+VKGLSLGQGQG KA RLIE+A Q+G WVYLQNCHL++SWL ELER+CE L+PD  H+DFRLWLTSMPC  FPVS+LQ  VKMTNEPP+GL+A
Sbjct: 2808 SDPTKGFYQFAAQMHFEKRVKGLSLGQGQGAKAARLIEDAAQRGGWVYLQNCHLFVSWLPELERVCEALAPDATHRDFRLWLTSMPCAAFPVSVLQGAVKMTNEPPRGLRA 2918          
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A8J2SZZ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZZ7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 2.750e-49
Identity = 81/111 (72.97%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
            +DPTKAF  F  + +F KKV+ LSLGQGQG KAT++IE+A QKGTWVYLQNCHL++SWL  LE LC++L+P+  H+DFRLWLTSMPC +FPVSILQNGVKMTNEPPKGLKA
Sbjct: 3560 SDPTKAFNIFCGEMKFHKKVQSLSLGQGQGPKATQMIEDAAQKGTWVYLQNCHLFVSWLINLEVLCDNLTPEKTHRDFRLWLTSMPCAQFPVSILQNGVKMTNEPPKGLKA 3670          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF24_ECTSI8.900e-6594.59Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JN05_9PHAE3.060e-6493.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U4X8_9STRA2.270e-5784.68Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2CY64_9STRA1.180e-5673.87Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0YHW5_AURAN1.280e-5582.88Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A482RTD3_9ARCH3.670e-5478.38Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2CY45_9STRA2.650e-5276.58Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3H3N1_9STRA4.840e-5276.58Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835YSP2_9STRA1.030e-5174.77Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A8J2SZZ7_9STRA2.750e-4972.97Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10180contigL-digitata_M_contig10180:3539..4428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LF24
PFAMsAAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size363
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.46e-65
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size363
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406623.1207447-CDS-L-digitata_M_contig10180:3538..37631682406623.1207447-CDS-L-digitata_M_contig10180:3538..3763Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10180 3539..3763 -
1682406623.13119-CDS-L-digitata_M_contig10180:4290..44281682406623.13119-CDS-L-digitata_M_contig10180:4290..4428Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10180 4291..4428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10180.1.1prot_L-digitata_M_contig10180.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10180 3539..4428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10180.1.1

>prot_L-digitata_M_contig10180.1.1 ID=prot_L-digitata_M_contig10180.1.1|Name=mRNA_L-digitata_M_contig10180.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=121bp
ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQ
NCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVK
MTNEPPKGLKARYICGATMW*
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mRNA from alignment at L-digitata_M_contig10180:3539..4428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10180.1.1 ID=mRNA_L-digitata_M_contig10180.1.1|Name=mRNA_L-digitata_M_contig10180.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=890bp|location=Sequence derived from alignment at L-digitata_M_contig10180:3539..4428- (Laminaria digitata LdigPH10_18mv male)
GCAGACCCCACGAAAGCTTTCTACCAGTTCGCTGCTCAGAAAAGATTCGA CAAGAAGGTGAAAGGCCTCAGTCTAGGCCAGGGGCAGGGGCTTAAGGCCA CAAGACTGATCGAGGAGGCCACCCAGAAGGGGACGTGGGTGAGTCGTACC CCCTGTCTTCGAAACGCCTACTTCTGTCTGTAACCGTACTTCGGGACCTC TTACCGGCAGCGACACAATCCACACGATTTTTGCTACGAAACAATTCCTT TGTTACATGCGCAATGCTTCGGAGTGTCATCAGTACTTTTGCCATCCGAC AATGTGTTCTATGTACAGCATGGACTTCAACGTTGATCACCCATAAGCAT TACCGAAAGAAGAAGAAAACCACGGGAAACAAAAAAAGGAAACGAATATT GTTGTTGTTGTTATGAGCATGTTTGCCATTCGGCAATGTCTTTTTCATTA GCTTCCTTAAACGTCGACCACTCGTAAGCATTAATATTCCCAAAAAAAAC AAAAATGATTTATTCGTAATACATTACATGTTCTGGTCTGTTTCTTTCCT TTCTCTACGCCTTTCTACCGCACCACCCTAAGCGTCACGATACCACGCCT CATTCTCACATTCACCCCCTTAAAACCCGTGCACTTATCTACTCGTTTTT GGGATAATCCAACAGGTTTACCTGCAAAACTGCCATTTGTATATCTCCTG GCTGGCCGAACTGGAGCGTCTCTGCGAAGACCTCAGTCCTGACACGGTGC ACAAGGACTTCCGGCTGTGGCTGACCTCGATGCCTTGCAAGGAGTTTCCC GTTTCTATCCTCCAAAACGGAGTGAAGATGACAAACGAGCCGCCAAAGGG TTTGAAGGCGAGATACATTTGTGGAGCCACAATGTGGTAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10180:3539..4428-

>mRNA_L-digitata_M_contig10180.1.1 ID=mRNA_L-digitata_M_contig10180.1.1|Name=mRNA_L-digitata_M_contig10180.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig10180:3539..4428- (Laminaria digitata LdigPH10_18mv male)
GCAGACCCCACGAAAGCTTTCTACCAGTTCGCTGCTCAGAAAAGATTCGA
CAAGAAGGTGAAAGGCCTCAGTCTAGGCCAGGGGCAGGGGCTTAAGGCCA
CAAGACTGATCGAGGAGGCCACCCAGAAGGGGACGTGGGTTTACCTGCAA
AACTGCCATTTGTATATCTCCTGGCTGGCCGAACTGGAGCGTCTCTGCGA
AGACCTCAGTCCTGACACGGTGCACAAGGACTTCCGGCTGTGGCTGACCT
CGATGCCTTGCAAGGAGTTTCCCGTTTCTATCCTCCAAAACGGAGTGAAG
ATGACAAACGAGCCGCCAAAGGGTTTGAAGGCGAGATACATTTGTGGAGC
CACAATGTGGTAG
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