mRNA_L-digitata_M_contig10180.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: D8LF24_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF24_ECTSI) HSP 1 Score: 222 bits (565), Expect = 8.900e-65 Identity = 105/111 (94.59%), Postives = 110/111 (99.10%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAFYQFAAQ RFDKKVKGLSLGQGQGLKATRLIEEA+QKGTWVYLQNCHLYISWLAELER+CE+LSP+TVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA
Sbjct: 3608 SDPTKAFYQFAAQMRFDKKVKGLSLGQGQGLKATRLIEEASQKGTWVYLQNCHLYISWLAELERMCEELSPETVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 3718
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A6H5JN05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN05_9PHAE) HSP 1 Score: 220 bits (561), Expect = 3.060e-64 Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTK FYQFAAQ RFDKKVKGLSLGQGQGLKATRLIEEA+QKGTWVYLQNCHLYISWLAELER+CE+LSP+TVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA
Sbjct: 2791 SDPTKVFYQFAAQMRFDKKVKGLSLGQGQGLKATRLIEEASQKGTWVYLQNCHLYISWLAELERMCEELSPETVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 2901
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S1U4X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4X8_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.270e-57 Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAFY+FAAQ FDKKVK LSLGQGQG KA RLIEE Q+GTWVYLQNCHL+ISWL ELERLCE SPDT HKDFRLWLTSMPC +FPVSILQNGVKMTNEPPKGLKA
Sbjct: 625 SDPTKAFYEFAAQMHFDKKVKALSLGQGQGPKAVRLIEEGQQRGTWVYLQNCHLFISWLVELERLCEGFSPDTAHKDFRLWLTSMPCPQFPVSILQNGVKMTNEPPKGLKA 735
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S2CY64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CY64_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.180e-56 Identity = 82/111 (73.87%), Postives = 97/111 (87.39%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAF+QFA + DKK+ LSLGQGQG+KA RLIEE QKGTWV+LQNCHLY+SWL +LE++CE+L+P+TVHKDFR+WLTS P FPVSILQNG+KMTNEPPKGLKA
Sbjct: 50 SDPTKAFFQFATDMKMDKKIMPLSLGQGQGVKAERLIEEGVQKGTWVFLQNCHLYVSWLTQLEQMCEELTPETVHKDFRIWLTSAPADAFPVSILQNGIKMTNEPPKGLKA 160
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: F0YHW5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHW5_AURAN) HSP 1 Score: 196 bits (497), Expect = 1.280e-55 Identity = 92/111 (82.88%), Postives = 100/111 (90.09%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAF F A+ RFDKKVK LSLGQGQG KAT++IEEATQKG+WVYLQNCHL+ISWL ELERLC+ LSPD HKDFRLWLTSMPC +FPVSILQNGVKMTNEPPKGLKA
Sbjct: 3585 SDPTKAFNLFCAEMRFDKKVKKLSLGQGQGTKATKMIEEATQKGSWVYLQNCHLFISWLTELERLCDGLSPDATHKDFRLWLTSMPCGDFPVSILQNGVKMTNEPPKGLKA 3695
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A482RTD3_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTD3_9ARCH) HSP 1 Score: 187 bits (474), Expect = 3.670e-54 Identity = 87/111 (78.38%), Postives = 99/111 (89.19%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAF +FAA+ + D+KV+ LSLGQGQG KA ++IEEATQKG WV LQNCHLYISWL ELER+CE LSPD+VHKDFRLWLTSMPCKEFP S+LQ+ VKMTNEPPKGLKA
Sbjct: 10 SDPTKAFSEFAAKMKMDRKVRMLSLGQGQGPKAAKMIEEATQKGNWVLLQNCHLYISWLQELERICESLSPDSVHKDFRLWLTSMPCKEFPSSVLQSAVKMTNEPPKGLKA 120
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S2CY45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CY45_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.650e-52 Identity = 85/111 (76.58%), Postives = 98/111 (88.29%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DP KAF +FA + RFDKKVK LSLGQGQG KAT +I++ATQKG W YLQNCHL++SWL LER+C++LSPDTVHKDFRLWLTSMP +FPV+ILQNGVKMTNEPPKGLKA
Sbjct: 284 SDPAKAFLEFAKEMRFDKKVKMLSLGQGQGTKATNMIQDATQKGLWAYLQNCHLFLSWLTTLERICDELSPDTVHKDFRLWLTSMPSPKFPVAILQNGVKMTNEPPKGLKA 394
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A7S3H3N1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3N1_9STRA) HSP 1 Score: 183 bits (464), Expect = 4.840e-52 Identity = 85/111 (76.58%), Postives = 99/111 (89.19%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAF +FA +++ D+KV+ LSLGQGQG KA ++IEEATQKG WV LQNCHLYISWL ELER+CE+LS D+VHKDFRLWLTSMPCKEFP S+LQ+ VKMTNEPPKGLKA
Sbjct: 83 SDPTKAFSEFAVKQKMDRKVRMLSLGQGQGPKAVKMIEEATQKGNWVLLQNCHLYISWLQELERICENLSGDSVHKDFRLWLTSMPCKEFPSSVLQSSVKMTNEPPKGLKA 193
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A835YSP2_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP2_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.030e-51 Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTK FYQFAAQ F+K+VKGLSLGQGQG KA RLIE+A Q+G WVYLQNCHL++SWL ELER+CE L+PD H+DFRLWLTSMPC FPVS+LQ VKMTNEPP+GL+A
Sbjct: 2808 SDPTKGFYQFAAQMHFEKRVKGLSLGQGQGAKAARLIEDAAQRGGWVYLQNCHLFVSWLPELERVCEALAPDATHRDFRLWLTSMPCAAFPVSVLQGAVKMTNEPPRGLRA 2918
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Match: A0A8J2SZZ7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZZ7_9STRA) HSP 1 Score: 177 bits (450), Expect = 2.750e-49 Identity = 81/111 (72.97%), Postives = 96/111 (86.49%), Query Frame = 1
Query: 1 ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQNCHLYISWLAELERLCEDLSPDTVHKDFRLWLTSMPCKEFPVSILQNGVKMTNEPPKGLKA 333
+DPTKAF F + +F KKV+ LSLGQGQG KAT++IE+A QKGTWVYLQNCHL++SWL LE LC++L+P+ H+DFRLWLTSMPC +FPVSILQNGVKMTNEPPKGLKA
Sbjct: 3560 SDPTKAFNIFCGEMKFHKKVQSLSLGQGQGPKATQMIEDAAQKGTWVYLQNCHLFVSWLINLEVLCDNLTPEKTHRDFRLWLTSMPCAQFPVSILQNGVKMTNEPPKGLKA 3670 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig10180.1.1 >prot_L-digitata_M_contig10180.1.1 ID=prot_L-digitata_M_contig10180.1.1|Name=mRNA_L-digitata_M_contig10180.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=121bp ADPTKAFYQFAAQKRFDKKVKGLSLGQGQGLKATRLIEEATQKGTWVYLQback to top mRNA from alignment at L-digitata_M_contig10180:3539..4428- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig10180.1.1 ID=mRNA_L-digitata_M_contig10180.1.1|Name=mRNA_L-digitata_M_contig10180.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=890bp|location=Sequence derived from alignment at L-digitata_M_contig10180:3539..4428- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig10180:3539..4428- >mRNA_L-digitata_M_contig10180.1.1 ID=mRNA_L-digitata_M_contig10180.1.1|Name=mRNA_L-digitata_M_contig10180.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=363bp|location=Sequence derived from alignment at L-digitata_M_contig10180:3539..4428- (Laminaria digitata LdigPH10_18mv male)back to top |