mRNA_L-digitata_M_contig1018.4.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1018.4.1
Unique NamemRNA_L-digitata_M_contig1018.4.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig1018.4.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.590e-18
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:  187 MGEVRVWFEGQLRRMLGFDEVEEIAKCALESFPVSKPLELKQYLEQFLGQSKAVDKLCT 363
            M + R WFEG+LRRMLGFDEVEEIA+ AL+SFPVS+P+EL+QYLEQFLGQS+    L T
Sbjct:    1 MAKTRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLLT 59
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BLAST of mRNA_L-digitata_M_contig1018.4.1 vs. uniprot
Match: A0A7S2SAT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAT0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.540e-7
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  193 EVRVWFEGQLRRMLGFDEVEEIAKCALESFPVSKPLELKQYLEQFLGQSKAVDKLCTDLSARR 381
            E + W  G+LR++ GFDEVEE+A   L +FP    + L+Q+L + LG S+A++ L  +LS+RR
Sbjct:   22 ETKAWLLGELRKLFGFDEVEEMADYLL-AFPPDDAVSLQQFLVELLGASEAIETLVRELSSRR 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1018.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFY4_9PHAE3.590e-1871.19zf-C2HC5 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2SAT0_9STRA6.540e-744.44Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1018contigL-digitata_M_contig1018:8145..11300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size452
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSecreted protein
Ec32 orthologEc-27_001060.2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.9212344-CDS-L-digitata_M_contig1018:8144..82521682406622.9212344-CDS-L-digitata_M_contig1018:8144..8252Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 8145..8252 -
1682406622.9306629-CDS-L-digitata_M_contig1018:8801..88971682406622.9306629-CDS-L-digitata_M_contig1018:8801..8897Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 8802..8897 -
1682406622.9391494-CDS-L-digitata_M_contig1018:10430..104901682406622.9391494-CDS-L-digitata_M_contig1018:10430..10490Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1018 10431..10490 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406622.9471004-UTR-L-digitata_M_contig1018:10490..106131682406622.9471004-UTR-L-digitata_M_contig1018:10490..10613Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1018 10491..10613 -
1682406622.955401-UTR-L-digitata_M_contig1018:11237..113001682406622.955401-UTR-L-digitata_M_contig1018:11237..11300Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig1018 11238..11300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1018.4.1prot_L-digitata_M_contig1018.4.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1018 8145..10490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1018.4.1

>prot_L-digitata_M_contig1018.4.1 ID=prot_L-digitata_M_contig1018.4.1|Name=mRNA_L-digitata_M_contig1018.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=88bp
MGEVRVWFEGQLRRMLGFDEVEEIAKCALESFPVSKPLELKQYLEQFLGQ
SKAVDKLCTDLSARRSGTPAAAGAAKNQSSASDDFWGA
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mRNA from alignment at L-digitata_M_contig1018:8145..11300-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1018.4.1 ID=mRNA_L-digitata_M_contig1018.4.1|Name=mRNA_L-digitata_M_contig1018.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=3156bp|location=Sequence derived from alignment at L-digitata_M_contig1018:8145..11300- (Laminaria digitata LdigPH10_18mv male)
GGAGTCCGGAGTGCTGCCTAGCTGAAGAGCTCAGCTGAAGCTATATAGAG
GGCCCCGTTGTCGGTGAGAAATTGGACTGAACTAGGGAAGTGACCGCACC
CGGTCTGAGTGCAAAAGTGGTGATACCTGTTGTCTACTGCTGGAATTGCG
CAGACGCAGAACCCCCAATCCTGACAGTCTCCTTGCGTCGTGTTCTCTGG
GCGAGAAGTACGCTGCTGCTTACTGTATCATGGACCACCTCGTACTGCTG
TTAGGGTACTCACCAAGGAAGGCTGCGTAAAACAGGGTCAACGAGTGCTG
CATTATTGGCTAGCTTCGTATCTAGGCTCCCTGCTGCGTGATGTGTGCTT
GCCCCTTTATCACAATGCAACCTTTGCTCTAGAATGCTTTGGTTTGCTTT
TTCGTGTTTCGTAGAGTTCAACGAGGGCACCTCTACCTCTGCGGAACGAC
GGCGGGAATGATCCGCGCTGTGTGCCTTGGGTGCCTTGTGTGCCTTGGGT
CTCACTTTTTCCGATGCTGTTGCCACTGCCACTGCCACTACTAGTTTAGA
CCACTACGAGTACAGCAGTATACGAGTACCTGCAAGCTTTTTCCTCGTCT
GTGTTGGACACTTTTTTGTTTGGACCTAGCCTTATTCCGTTCGCCCCTCT
GCACATGTTTGACAAACCTTGGCGACGTTTTCTATAGGTGCGTATCATAC
CGCAGGAGAGGGGACACCGTCACTGACAGCTACGAGGGTATCAGGCACGG
CTGCACACGAGTGTTGATCAAGGATCACCTCGCAAAGCGGAGCGAAATAA
CTGCTGAACGATGGGCGAAGTTCGGGTATGGTTCGAAGGCCAACTCCGGC
GGATGCTTGGTTTCGACGAGGTGATTTGCTTTCTTCCTGGTCGTAGGCAG
AGAACAGAGTAAGATTCGCCGTCTCGAGGAAGGGGGAAATCTGGTTTTCA
TTGTGACGGACGAAATACCGGTAATCATGGTGCCCAACCGACCAACTGTG
GACTAAGCGCTGCATACAGCAGGAGAGGACGAAGTGCTCATTCGATCGTG
GCTTCGGCTGAACGTGCATGGGCACGCGAGCATTGTAGGGTTTACACGAG
CGGACGGCTCGACTGCCGTTGATAGGCCTAGATGCTTGCCTGGTATTTAC
GTATTTACTGTGTCTGGTAGGTAGTATCACTAAGGTAGGACTAATGTTGT
GGTTTTCTCGCGACGACTATGCAGCGAGTGCCAACAGCAGCGAGGGAGCT
TCTCTAGTTATCGAGCGTCATGTACGGGCATGACACCCAAAGCCCACACG
TAGGTTTACAGCATCGCTTTCCACCTTACTTGACGTCATCGTGTGATATG
AACACCCATCTGCACAAGTGGATTCCTGTTACCTGGTACCTAGCCCACGT
GCTGGTGATGCTCCTGTGCCGATTTTTGCCGGATGCCAAGCAAACAACAC
AGAAAGGAAAAAAGGACTGACCTACTATTAATAGTCTAGTCTACTGCTGT
TTGGGTCAAGTGCCAAAATGGCACTGTAAGTGTTGTTTACCGGTCGCTCA
AGGGGAGAGGGTCCGCTACGTAAGGCACCATATATAACCTCACCTCTTAA
AACTGTAATAGAACCTACTATACAGACAAGTAGAACTCTTGAGCTCCAGC
TTTCGGGTGCCGAGGTCTAGGGTTGGGCTGAAAATCGAGGGCTCCTGAGG
TCAAACTAAAGGGCGGCAGCACTATGAAATAGACTAATCACACGTGGTAC
TCTGTTGTACCAGGTACCTTTGATATTCTTCATCCCTTTTGGGGCCCAGG
TATAGCGACCTAAACACGATAGGTTTTGGTCTTATCAGCCGTCTTGTATC
ATGGTGTGAGCGCGCGACTGTACGAGTAGGATCAGGCCGCTCCCGCCGTG
TCGCACGGCTCTGTATTCGTAACATGCCGTCGTCATGTTTTCCCTCTGAG
TCCGATCGATTACGGGTGTGGTAATGTCTACTGGTATGTTTCTGCGGGAG
TACCGCGTATTACAAGCAAACATCAACAAACGGGGACGATTGCTCAATTT
TGCGCTACGGTGCTTTGAATTTTGAGCATCGACAGACAATAAAACACAAA
GAGAAACGCAACTGCCTACCCAACTCTGATGTTCGGGGTGCACTATTTAG
TATTAAACGTGCGTAAAACAACCGCCATTTGGATCCATCAAGACGGAGAA
AACCAGCAGTACTCGTAGCTCTACGGTAGTACAAGCTGAAACACGGCCTT
TAGCACTATCGCAGTAGCGACAACATCGCGCTGCGGCAGGACCAGCGGCA
AATCGCACAAAAATATTGGATAAGGCTCGATTTAATTCCGCTGCGCTCTC
CCCCTGCCCGCGGTTGCTCGGCCTCGCGTTGGACCTATTCCTGCGCACCG
CAGGTGGAAGAGATCGCGAAGTGTGCGCTCGAAAGCTTTCCCGTGTCGAA
GCCCCTGGAGCTCAAGCAGTATCTGGAGCAGTTTTTGGGCCAGTCAAAGG
TGAACCCCTTCTTGTTATCGTGGCCGAGAATATTCTCGAGCACACCCGAG
GGTTTGGAAAATTTGAAACAGCCTGCCTTCTTTGATGCTCGGTCGTTCGT
ACAGGCTCTGCGCTCCACGATGCTGATCCGGGAGATGAAGGCTTGCAGTT
TCTGCGACGTCGATGTTGGACGGAGACACGTCGCACACATGCACTCAACA
TATCAACATTTTTATTTTAAAAGCATAACAACAGCCGTCGACGTATAATC
AACTGAGGGTTTATTTCCGGATCGCTCGCAAATAAAAATACCACCAGATT
TCATGGTGGGGATACACAATCAATCATGCCTATCTATACTCATTATTATT
CACCTATATATATGTATCTATACCTATTTGTATTCACCTATATCTATCTA
TGGCGCGCAATATCATGAAACTATCAACATTTTCCCTCAACCTTTTCCTG
TGCAACCGCTACTACCAAGGACCTCTGAAACGTTGAGTCAATTAGTAACC
CGCGCCCTCGGACGAATTTTCCGCCCGTATTCTATCGACGGTTTCCAGGC
TGTGGATAAGCTCTGCACCGATCTCTCCGCTAGGCGGAGTGGAACACCGG
CAGCAGCAGGGGCAGCGAAAAACCAATCGAGCGCAAGCGATGACTTTTGG
GGGGCG
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Coding sequence (CDS) from alignment at L-digitata_M_contig1018:8145..11300-

>mRNA_L-digitata_M_contig1018.4.1 ID=mRNA_L-digitata_M_contig1018.4.1|Name=mRNA_L-digitata_M_contig1018.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=264bp|location=Sequence derived from alignment at L-digitata_M_contig1018:8145..11300- (Laminaria digitata LdigPH10_18mv male)
ATGGGCGAAGTTCGGGTATGGTTCGAAGGCCAACTCCGGCGGATGCTTGG
TTTCGACGAGGTGGAAGAGATCGCGAAGTGTGCGCTCGAAAGCTTTCCCG
TGTCGAAGCCCCTGGAGCTCAAGCAGTATCTGGAGCAGTTTTTGGGCCAG
TCAAAGGCTGTGGATAAGCTCTGCACCGATCTCTCCGCTAGGCGGAGTGG
AACACCGGCAGCAGCAGGGGCAGCGAAAAACCAATCGAGCGCAAGCGATG
ACTTTTGGGGGGCG
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