prot_L-digitata_M_contig1018.4.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig1018.4.1
Unique Nameprot_L-digitata_M_contig1018.4.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length88
Homology
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BLAST of mRNA_L-digitata_M_contig1018.4.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 9.660e-19
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0 
Query:    1 MGEVRVWFEGQLRRMLGFDEVEEIAKCALESFPVSKPLELKQYLEQFLGQSKAVDKLCT 59
            M + R WFEG+LRRMLGFDEVEEIA+ AL+SFPVS+P+EL+QYLEQFLGQS+    L T
Sbjct:    1 MAKTRAWFEGELRRMLGFDEVEEIARFALDSFPVSQPVELRQYLEQFLGQSRGGKSLLT 59
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BLAST of mRNA_L-digitata_M_contig1018.4.1 vs. uniprot
Match: A0A7S2SAT0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAT0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.290e-7
Identity = 28/63 (44.44%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:    3 EVRVWFEGQLRRMLGFDEVEEIAKCALESFPVSKPLELKQYLEQFLGQSKAVDKLCTDLSARR 65
            E + W  G+LR++ GFDEVEE+A   L +FP    + L+Q+L + LG S+A++ L  +LS+RR
Sbjct:   22 ETKAWLLGELRKLFGFDEVEEMADYLL-AFPPDDAVSLQQFLVELLGASEAIETLVRELSSRR 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1018.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFY4_9PHAE9.660e-1971.19zf-C2HC5 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2SAT0_9STRA2.290e-744.44Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1018contigL-digitata_M_contig1018:8145..10490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1018.4.1mRNA_L-digitata_M_contig1018.4.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig1018 8145..11300 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig1018.4.1 ID=prot_L-digitata_M_contig1018.4.1|Name=mRNA_L-digitata_M_contig1018.4.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=88bp
MGEVRVWFEGQLRRMLGFDEVEEIAKCALESFPVSKPLELKQYLEQFLGQ
SKAVDKLCTDLSARRSGTPAAAGAAKNQSSASDDFWGA
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