mRNA_L-digitata_M_contig1018.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: A0A6H5JFY4_9PHAE (zf-C2HC5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFY4_9PHAE) HSP 1 Score: 349 bits (896), Expect = 2.550e-110 Identity = 207/337 (61.42%), Postives = 235/337 (69.73%), Query Frame = 3
Query: 486 PAPQWSGVSCQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGDTKGGGASEGVSGGAAP-SAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTSHNWLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVETKE------AGEGGAQEKSDEAVNAAMEGLSLDFGANARGTSGGIGGGAVGAANTTAVEQQPPAGSGQAADQRPSLENTGLRGRAKEVYDVMRINLDKQSRRQ-PGGRGGK---GSRIAGGGGVRAEKSRVSLWRVQHDVESEDVLRRSQPSADGGSTVGGFVPDGLDKFQPRDELA 1463
P P+WSGV+C CMGKTHD+VTNCT CGKIACV EGGFGCSFC LP TGREP+S + G +G +G AAP SAALKEALERKD+LLLFDRTSASRTRVLDDQGDYFTSHNWLSQRERE GEAEEKARRD+AA RRGARR+VK+SIDIMGRRV+ET A GG + +DE + +G+SLDFG+ E+ G+G +QR SLENTGLRGRAKEVYDVMR NLDK+SRRQ PGG GGK GSRI G E SRV+LWRVQHDV+S+D+LR+SQ S G KF+P DELA
Sbjct: 228 PVPEWSGVTCLCMGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSATSGGV------DGAAGAAAPHSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKARRDDAASRRGARRQVKMSIDIMGRRVIETHPGEDGGLADGGGGEXXADEDASRKTQGVSLDFGSXXXXXXXXXXXXXXXXXXXXXAEEADTPGAGNG-NQRLSLENTGLRGRAKEVYDVMRANLDKKSRRQRPGGAGGKAVAGSRIVG---AVPEASRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADELA 553
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: D7FU14_ECTSI (Similar to thyroid hormone receptor interactor 4 isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU14_ECTSI) HSP 1 Score: 339 bits (870), Expect = 1.030e-109 Identity = 199/325 (61.23%), Postives = 234/325 (72.00%), Query Frame = 3
Query: 522 MGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGDTKGGGASEGVSGGAAP-SAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTSHNWLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVETKEAGEG-----GAQEKSDEAVNAAMEGLSLDFGANARGTSGGIGGGAVGAANTTAVEQQPPAGSGQAADQRPSLENTGLRGRAKEVYDVMRINLDKQSRRQ-PGGRGGK---GSRIAGGGGVRAEKSRVSLWRVQHDVESEDVLRRSQPSADGGSTVGGFVPDGLDKFQPRDELAC 1466
MGKTHD+VTNCT CGKIACV EGGFGCSFC LP TGREP+S + G +G +G AP SAALKEALERKD+LLLFDRTSASRTRVLDDQGDYFTSHNWLSQRERE GEAEEK RRD+AA RRGARR+VK+SIDIMGRRV+ET++ GEG G + ++D+ + +G+SLDFG+++ G G A + E+ +G+G +QR SLENTGLRGRAKEVYDVMR NLDK+SRR+ P G GGK GSRI G E SRV+LWRVQHDV+S+D+LR+SQ S G KF+P DELAC
Sbjct: 1 MGKTHDVVTNCTDCGKIACVKEGGFGCSFCGCRLPTTGREPRSAASGGV------DGAAGATAPQSAALKEALERKDRLLLFDRTSASRTRVLDDQGDYFTSHNWLSQREREKGEAEEKVRRDDAASRRGARRQVKMSIDIMGRRVIETQDPGEGRADGGGGEGEADDDASKKTQGVSLDFGSSSAAGGGAAGSSAXXXXXGSIGEEAGTSGAGNG-NQRLSLENTGLRGRAKEVYDVMRANLDKKSRRRRPRGAGGKAVAGSRIVG---AVPETSRVNLWRVQHDVDSDDLLRQSQASGXXXXXXX-XXXXGFGKFEPADELAC 314
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: A0A0C9R7G9_9HYME (Trip4_1 protein n=2 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9R7G9_9HYME) HSP 1 Score: 95.5 bits (236), Expect = 3.550e-17 Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 3
Query: 507 VSCQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGDTKGGGASEGVSGGAAPSAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTSHN--WLSQRERESGEAEEKARRDEAAQRR-GARREVKLSIDIMGRRVVETKEAGE 980
V C C KTH ++ NC TCG+I C EG C FC ++ ++ + S+ + K AL+++DKLL FDR SA RTRV+DD+ DY+ S N WLS+ ER AE + R E +R+ G+R E K ++DI GR+VVE ++ E
Sbjct: 132 VKCDCEAKTHKLINNCLTCGRIVCEQEGAGPCFFCGELVCTPNQQNVLSTNSKN-----SDNLYNKLMEQKPSKAALKQRDKLLEFDRNSAKRTRVIDDESDYYQSSNSVWLSKEER----AEMERREAEMKERKYGSRLEKKFTVDIFGRQVVEEEDDSE 283
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: A0A0N8D2Q7_9CRUS (Activating signal cointegrator n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0N8D2Q7_9CRUS) HSP 1 Score: 92.8 bits (229), Expect = 2.670e-16 Identity = 57/158 (36.08%), Postives = 89/158 (56.33%), Query Frame = 3
Query: 513 CQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSG------GDTKGGGASEGVSGGAAPSAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVE 962
C+C H ++ NC CG++ C EG C FC +P +E SQ+ G G +G + A P A A+ K+KLL FDRTS RTRV+DD+ DYF + + WL+ ++R++ ++E+ R+ R G+RR +K+++D GR+V+E
Sbjct: 131 CECQASKHSLIRNCLECGRVICSQEGPGPCIFCTENMPANEKETYSQANKPAPQRSKQSGKGFLDGTA--ALPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADGNKWLNPKQRDALRSKERELRES---RHGSRRGMKVTLDFAGRQVIE 283
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: E9GBD9_DAPPU (ASCH domain-containing protein n=4 Tax=Daphnia TaxID=6668 RepID=E9GBD9_DAPPU) HSP 1 Score: 92.4 bits (228), Expect = 3.520e-16 Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 3
Query: 513 CQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGD----TKGGGASEGVSGGAAPSAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFT--SHNWLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVE 962
C+C H +V NC CG++ C EG C FC + +E QS TK G P A A+ K+KLL FDRTS RTRV+DD+ DYF S+ WL+ ++R++ +EK RD R G+RR++K+++D GR+V+E
Sbjct: 129 CECQASKHSLVRNCLECGRVICAQEGPGPCVFCTENMSACEKEALLQSNNAPAQRTKQSGRRFLDGTAPLPDKAFTTAMAHKEKLLEFDRTSEHRTRVIDDESDYFNADSNKWLNPKQRDALRTKEKELRDS---RHGSRRQIKVTLDFAGRQVIE 281
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: A0A7R9FI96_9NEOP (Hypothetical protein n=1 Tax=Timema tahoe TaxID=61484 RepID=A0A7R9FI96_9NEOP) HSP 1 Score: 92.0 bits (227), Expect = 6.950e-16 Identity = 57/157 (36.31%), Postives = 91/157 (57.96%), Query Frame = 3
Query: 513 CQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGDTKGGGASEGVSGGAAPSAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTSHN-WLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVETKEAGE 980
C+C H ++ NC CG+I C EG C FC ++ + QSG +G + + GGA + AL+ +D+LL +DRTS RTRV+DD+ DYF +++ WLS ERE +EK +RD+ R +R + ++++D GR+V+E ++ G+
Sbjct: 166 CECQASKHRLINNCLKCGRIVCEQEGSGPCLFCYTLVCSQDEQTMLQSG-SKQGDKLYQKLMGGAKQD--TETALQHRDRLLEYDRTSERRTRVIDDESDYFAANSVWLSSAEREKMREKEKEQRDK---RHASRLDKRVTLDFAGRQVLEEEDGGD 316
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: A0A7R9K444_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9K444_TIMGE) HSP 1 Score: 92.0 bits (227), Expect = 7.410e-16 Identity = 57/157 (36.31%), Postives = 91/157 (57.96%), Query Frame = 3
Query: 513 CQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGDTKGGGASEGVSGGAAPSAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTSHN-WLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVETKEAGE 980
C+C H ++ NC CG+I C EG C FC ++ + QSG +G + + GGA + AL+ +D+LL +DRTS RTRV+DD+ DYF +++ WLS ERE +EK +RD+ R +R + ++++D GR+V+E ++ G+
Sbjct: 179 CECQASKHRLINNCLKCGRIVCEQEGSGPCLFCYTLVCSQDEQTMLQSG-SKQGDKLYQKLMGGAKQD--TETALQHRDRLLEYDRTSERRTRVIDDESDYFAANSVWLSSAEREKMREKEKEQRDK---RHASRLDKRVTLDFAGRQVLEEEDGGD 329
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: A7RPW2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPW2_NEMVE) HSP 1 Score: 91.3 bits (225), Expect = 8.980e-16 Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 3
Query: 513 CQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAA---------VLPRTGR----------------EPKSQSGGDTKGGGASEGVSGGAAPSAALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVE 962
C+C+G+ H +V NCT+CG+I C EG C FC A ++ R + E KSQ T G +G L +A+ K+KLL +D+TS RT+V+DD+ DYF++ + WLS++E+E +E+ R A+R G+RR++K+++D GRRVVE
Sbjct: 125 CECLGQKHGLVNNCTSCGRIVCDQEGAGPCYFCGALVCSRAEQEIIARESKKSAKLLKQLMSQEFSEEVKSQGRMGTSNGKDLQG----------LDKAIAHKNKLLEYDKTSVCRTKVIDDECDYFSTDGNKWLSKKEKEQLTVKEEELR---AKRHGSRRDMKITLDFAGRRVVE 288
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: UPI00077AD339 (activating signal cointegrator 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AD339) HSP 1 Score: 90.9 bits (224), Expect = 1.220e-15 Identity = 60/164 (36.59%), Postives = 97/164 (59.15%), Query Frame = 3
Query: 513 CQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTG-------REPKSQSGGDTKGGGASEGVSGGAAPSA--ALKEALERKDKLLLFDRTSASRTRVLDDQGDYFTS--HNWLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVETKE 971
C+C+G+ H ++ NC CG+I C+ EG C FC A++ T + KSQ + + E S A L+EA+ K+KL+ FD++ RT+V+DD+ DYF S + WLS+RER++ +E+ R++ R G+RR++K+++D GRRV++ KE
Sbjct: 134 CECLGQKHQLINNCIECGRIVCMQEGSGPCYFCGALVCSTEEKEILAQKSKKSQKLYEKLLTRSIEDASEETLSVADKGLQEAIAHKNKLIEFDKSGVRRTKVIDDECDYFASDSNRWLSKRERDTLRKKEEDLREK---RHGSRRQMKVTLDFAGRRVIDEKE 294
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Match: UPI001EE5E5BD (LOW QUALITY PROTEIN: activating signal cointegrator 1-like n=3 Tax=Haliotis TaxID=6452 RepID=UPI001EE5E5BD) HSP 1 Score: 90.1 bits (222), Expect = 2.600e-15 Identity = 69/196 (35.20%), Postives = 105/196 (53.57%), Query Frame = 3
Query: 510 SCQCMGKTHDIVTNCTTCGKIACVVEGGFGCSFCAAVLPRTGREPKSQSGGDTKGG--------GAS-------EGVSGGAAPSAALK------EALERKDKLLLFDRTSASRTRVLDDQGDYFTSHN-WLSQRERESGEAEEKARRDEAAQRRGARREVKLSIDIMGRRVVETKEAGEGGAQEKSDEAVNAAMEG 1031
+C+C H +V NCT CG++ C EG C F T E + + G K GA+ EG GG P+AA+K +AL+ K++LL FDRTSA RT+V+DD+ DYF S + WLS+++RE+ + E+ R +QR +RR+ K+++D GR+VV+ + + +DE V +G
Sbjct: 166 TCECQASKHSLVNNCTCCGRVVCQQEGSGPCVF-XXXXXXTREEQEILNRGSKKSERLRQQLMKGATIVPFLETEGGGGGLLPTAAVKMSEGLEKALKHKERLLDFDRTSARRTKVIDDESDYFASDSKWLSKKDREALKKREEELR---SQRFASRRDRKITLDFAGRQVVDAESDAAKYMYDANDEVVQQVYQG 357 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1018.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig1018.3.1 >prot_L-digitata_M_contig1018.3.1 ID=prot_L-digitata_M_contig1018.3.1|Name=mRNA_L-digitata_M_contig1018.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=466bp MYQKPAEEEDFWGGGTKSGRSASAKGTATPAPTPAGKPVPAPIRATTTNTback to top mRNA from alignment at L-digitata_M_contig1018:6422..8113- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig1018.3.1 ID=mRNA_L-digitata_M_contig1018.3.1|Name=mRNA_L-digitata_M_contig1018.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1692bp|location=Sequence derived from alignment at L-digitata_M_contig1018:6422..8113- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig1018:6422..8113- >mRNA_L-digitata_M_contig1018.3.1 ID=mRNA_L-digitata_M_contig1018.3.1|Name=mRNA_L-digitata_M_contig1018.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=1398bp|location=Sequence derived from alignment at L-digitata_M_contig1018:6422..8113- (Laminaria digitata LdigPH10_18mv male)back to top |