mRNA_L-digitata_M_contig99888.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99888.2.1
Unique NamemRNA_L-digitata_M_contig99888.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6N8V3M1_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V3M1_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 9.690e-14
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   37 AEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            A+DRA+L TLY S GG  W R  RW TD++IGDW GV VD D RVV L  + NNLSG
Sbjct:  643 ADDRAVLETLYRSLGGPDWARADRWLTDSSIGDWHGVRVDGDGRVVGLLLNRNNLSG 699          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.730e-11
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            DR  L++L+ STGG  W R   WDTDA++  W+GV V+V  RVV L    NNL G
Sbjct:    5 DREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQG 59          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X3PGE1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A7X3PGE1_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 4.990e-11
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            DRA L+ LY ST G +W  N  W TDA IG+W GV VD D RVV L  + N LSG
Sbjct:  302 DRAALVALYESTDGPNWLVNENWLTDAPIGEWSGVLVDDDGRVVRLSLYRNGLSG 356          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X4J8B7_9BACT (BIG2 domain-containing protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4J8B7_9BACT)

HSP 1 Score: 64.7 bits (156), Expect = 1.740e-10
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            +R IL  LY++TGG++W+ N+ W TDA + DW GV+VD   RVV L  H N+L+G
Sbjct:  530 EREILGILYNATGGRNWRNNNNWLTDAPLRDWYGVSVDGQDRVVRLLLHENDLAG 584          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.430e-10
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   34 AAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            A+ DR  L+ L+H+TGG +W R   W T A +G W+GV V+   RVVEL    NNL G
Sbjct:  190 ASPDRDALVALFHATGGDNWTRKSNWCTAARLGTWEGVQVNQQGRVVELDLSDNNLRG 247          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X3XW89_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XW89_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-9
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            +RA+L  LY +TGG  W RN  W + A +G+W GV V  D RV++L    NNLSG
Sbjct:   40 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVIDLLLPSNNLSG 94          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A7X4EFU7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4EFU7_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 3.920e-9
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   43 DRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            +RA+L  LY +TGG  W RN  W + A +G+W GV V  D RV++L    NNLSG
Sbjct:   41 ERAVLGILYEATGGDDWTRNDNWLSAAPLGEWYGVTVAADGRVIDLLLPSNNLSG 95          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6B1AS51_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6B1AS51_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 1.370e-8
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   34 AAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQ 183
            A +DR++L+ LY +T G +W  N +W TDA +G+W GV VD + RV+ L+
Sbjct:  480 AQDDRSVLVALYEATDGPNWVNNEKWLTDAPLGEWYGVEVDANGRVIRLE 529          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6L7TJ10_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TJ10_9CHLR)

HSP 1 Score: 56.2 bits (134), Expect = 1.690e-7
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1
Query:   28 GSAAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            GSAA DRA+L+TLY++     W   + W +DA++G+W GV  D + RV+EL      L G
Sbjct: 1136 GSAASDRAVLVTLYNAVDAPGWVFEN-WLSDASLGEWQGVTTDANGRVIELDLGAFLLDG 1194          
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Match: A0A6N8V013_9BACT (BIG2 domain-containing protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V013_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.690e-7
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   34 AAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVDVDSRVVELQRHVNNLSG 207
            A +DRA+L  LY    G +W++   W   +++G+W GV VD   RVVEL    NNLSG
Sbjct:  638 ARDDRAVLEILYEVLDGPNWRQADGWLNASSLGNWHGVRVDSQGRVVELSLLSNNLSG 695          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99888.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6N8V3M1_9BACT9.690e-1461.40BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A6H5KQP2_9PHAE1.730e-1150.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7X3PGE1_9BACT4.990e-1156.36Uncharacterized protein n=1 Tax=Gemmatimonadales b... [more]
A0A7X4J8B7_9BACT1.740e-1050.91BIG2 domain-containing protein n=1 Tax=Gemmatimona... [more]
A0A6H5JBQ0_9PHAE4.430e-1048.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7X3XW89_9BACT1.680e-949.09Uncharacterized protein (Fragment) n=1 Tax=Gemmati... [more]
A0A7X4EFU7_9BACT3.920e-949.09Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
A0A6B1AS51_9GAMM1.370e-846.00Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6L7TJ10_9CHLR1.690e-743.33Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A6N8V013_9BACT1.690e-744.83BIG2 domain-containing protein n=2 Tax=Gemmatimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99888contigL-digitata_M_contig99888:552..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH90
PFAMsLRRNT_2,LRR_1,LRR_4,LRR_8,Pkinase,Pkinase_Tyr
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.45e-14
EggNOG OGsCOG4886@1|root,2QVSR@2759|Eukaryota
DescriptionLeucine rich repeat
Cds size207
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.975646-UTR-L-digitata_M_contig99888:551..5571682408658.975646-UTR-L-digitata_M_contig99888:551..557Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig99888 552..557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.9892082-CDS-L-digitata_M_contig99888:557..7641682408658.9892082-CDS-L-digitata_M_contig99888:557..764Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99888 558..764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99888.2.1prot_L-digitata_M_contig99888.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99888 558..764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99888.2.1

>prot_L-digitata_M_contig99888.2.1 ID=prot_L-digitata_M_contig99888.2.1|Name=mRNA_L-digitata_M_contig99888.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=69bp
MTSTITAGSAAEDRAILLTLYHSTGGKSWKRNHRWDTDANIGDWDGVAVD
VDSRVVELQRHVNNLSGF*
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mRNA from alignment at L-digitata_M_contig99888:552..764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99888.2.1 ID=mRNA_L-digitata_M_contig99888.2.1|Name=mRNA_L-digitata_M_contig99888.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=213bp|location=Sequence derived from alignment at L-digitata_M_contig99888:552..764+ (Laminaria digitata LdigPH10_18mv male)
ACGAAGATGACGTCCACGATCACGGCAGGCTCGGCTGCGGAAGACCGTGC GATACTCCTTACCTTGTACCACTCTACGGGTGGCAAGTCCTGGAAACGCA ATCATCGCTGGGATACGGACGCCAACATCGGCGACTGGGACGGTGTTGCC GTCGACGTCGACAGCCGGGTTGTTGAGTTGCAACGTCATGTCAACAACCT GAGTGGTTTCTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99888:552..764+

>mRNA_L-digitata_M_contig99888.2.1 ID=mRNA_L-digitata_M_contig99888.2.1|Name=mRNA_L-digitata_M_contig99888.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=207bp|location=Sequence derived from alignment at L-digitata_M_contig99888:552..764+ (Laminaria digitata LdigPH10_18mv male)
ATGACGTCCACGATCACGGCAGGCTCGGCTGCGGAAGACCGTGCGATACT
CCTTACCTTGTACCACTCTACGGGTGGCAAGTCCTGGAAACGCAATCATC
GCTGGGATACGGACGCCAACATCGGCGACTGGGACGGTGTTGCCGTCGAC
GTCGACAGCCGGGTTGTTGAGTTGCAACGTCATGTCAACAACCTGAGTGG
TTTCTGA
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