mRNA_L-digitata_M_contig9982.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9982.2.1
Unique NamemRNA_L-digitata_M_contig9982.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9982.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9982contigL-digitata_M_contig9982:4335..7821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size329
Hectar predicted targeting categorysignal peptide
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.4095252-CDS-L-digitata_M_contig9982:4334..45971682408658.4095252-CDS-L-digitata_M_contig9982:4334..4597Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9982 4335..4597 +
1682408658.422723-CDS-L-digitata_M_contig9982:7756..77841682408658.422723-CDS-L-digitata_M_contig9982:7756..7784Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9982 7757..7784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408658.4359968-UTR-L-digitata_M_contig9982:7784..78211682408658.4359968-UTR-L-digitata_M_contig9982:7784..7821Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig9982 7785..7821 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9982.2.1prot_L-digitata_M_contig9982.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9982 4335..7784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9982.2.1

>prot_L-digitata_M_contig9982.2.1 ID=prot_L-digitata_M_contig9982.2.1|Name=mRNA_L-digitata_M_contig9982.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=97bp
SLRSNVLYLLRSLADSILLSLARHLRGSRTILRRAPRKGAAAISLPLDNL
QICSCFSGLLQRNSKRRACTGNTGSRQGDTRDLADTPRKIKWTPRG*
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mRNA from alignment at L-digitata_M_contig9982:4335..7821+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9982.2.1 ID=mRNA_L-digitata_M_contig9982.2.1|Name=mRNA_L-digitata_M_contig9982.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=3487bp|location=Sequence derived from alignment at L-digitata_M_contig9982:4335..7821+ (Laminaria digitata LdigPH10_18mv male)
TCTCTGCGGTCGAACGTGCTGTATTTACTGCGCTCACTGGCTGACAGTAT
CCTTCTCTCTCTTGCGAGACACCTCCGAGGGTCGCGGACGATCCTGCGCC
GAGCGCCGAGGAAGGGCGCCGCGGCCATTTCTCTGCCCTTGGACAACCTC
CAAATTTGCTCTTGTTTTAGTGGGCTACTGCAGCGTAACAGCAAGAGGCG
GGCCTGCACAGGCAACACGGGGAGCAGGCAGGGGGATACCCGTGACCTCG
CAGACACTCCGAGGTGAGTTGCTGGCCGCCGCTACTGCCGAGTTGGTTCG
ACGAAAGAGGTGACGTCTCGCCGTGTTTCCGGGGGCGCAATCCAGGCATT
CGCTGTTGCTGCTGCTGCTGCTGTTCTTGCTGGTGGTGTTTTGTTTCTCT
CACCTTTAGGGTCGCGGGGGCGGACTGAAGTTGCCTCGTGTTCTTGAGTT
AGAATAGATGAGAGTGCTGTATGGAGAGTGTTCAAAGCAACGCTCGGGAC
GGGGTAGCGTTGCGGACAACCTGCCCTCCCACGGCGACTCACACTACTTT
CCTTTTACCGAGTAGGCGGATCCCCTCCTGGCTTGGAAGCTTGCTTGCGC
GTTTGTTTTAGACGGAAGGAAAAAGCTTGCAATTGCGCATTCGTTCGATC
ATCACGTACACAAAAGGATACTGGTATTGTTTTACGCAGAAACAGAAATG
TTGCCCTGTGTTATTTTCAAGTCGTTTCACGTGTTCGCGAGATCAAAATC
GATTTTGTACCCGTGTTGAATCAATACAGCGGTAGCAGTAGGTATCATAC
AGGCACAATAGGTCTATAACTACAGCAGCAGTACATCGTATTCCCATGAT
GAGGCCAAGCACGAGAGCATGTAACATGAAACATCCCTATATTTCTCTGC
CTCTTTGTCTCTTCCTCTCGAAGAGTAGCAGCGATGTAGTCAGTGTATCG
AGTGCGCCGTTGCCCCGCCTGTGTTTGACAAGGCAAAGACGATTACTCGT
GGCGATCGATGCCCACCCCCCCCGTCAATGATTGAGTTATTCAGTATTTT
AGTGAGGAAGATCACATTTTGATTGATCTCTCGCTCGGCTCATGTTGCTG
CTGCTCGCTTTGTTTTGTCTCTCAAGTGAAAAAAACAAACAAAACTGTTT
AACACGTCGGACATATCACGATCTAGATCATCTATCACGATCTAGATCAT
CTACTACTGTAGGTCCTGTCCTGTCCCTATGAGCTGTTGCGCAGGGTATG
TACAGCAGTACAGATGCAACCCAGGACACAAGTCCTAGATCATGCAGATA
ACACGGCTCCAACTCGGCAAACATGAGCTAGATCCTATCATACCTAATCA
AGAATATATCTGCCCTGAAAGATCTAGATCATGAAGTAAGAATCGATGAT
CTGTCCGAGGTGTGAACTGTTTGGTCGAGCTTGCTGTTATCATTGAGAGA
GTTAATTGAGTGTATCGGCATCGATACTGGTACTGCTGTATGTATCTGCG
ATGGTCACTGAGAGGAAGAGACAGGCAGAGATTGGAGATGAAGAGGTCGA
GATGATATTTACCGGTCCTCCCTCTGGAAAGTAGTACTGCATCCTGTCAT
TGGTTCCTGGTATGATGGTCTATACGAGTACTCGTACATGCGACGCGTAC
AGTAGATTCCAGGTGCGCACACGCAGTAGCAGCAAGTTTGGCAGCAGCAG
CGGCAGCGGCAGCGGCAGCAGTCGCACGCAAAGCATGCTTCAATTGCAAT
GTTGATGCTTGTTTCATACCACCAGCCACCGGGCACCTGGTAGCTATGTA
TGCTCCTCTGCTATTGCTGCTGCTGCTATGATACAACGTGGGATGAAATC
CATATCGTCATCTAGCTTATGGTATGATATGATGCCGACGGGGTGACTGC
TGTCATACCGGTATATCTCCAATCCCATTTATTTTCCTCGTCCTACTCTC
CCGCTCCCTCCCAGTAGTAACTCAGATCCGGGGTCACACAGAGGGCTCTT
CCCCCTCCTCCCCGCCACGGTACGCGCCCTTTATTTTTATCGCGAGAATA
ATTCAGCATTTTCTTCCCTCGTCGACTCGCGTCGAATTGCGCCTCGCGAT
GCTATTAATAGCAGTGTATCCCTTTTCCATTTTTATTTTTTGCAAATATA
TATAAATTCAAAATCTCACCACGGTGGGATTTGAACTCCAGGACCAACGC
TAGTACTCGTAGCATTCGAGGGTAACCACTATTAATAGCCCACATTACCA
GGCCAGGTACGTGAATACGTACGAAGTAGTTGTATAATCCAGCGAGCGAC
AGTATCAGCAGCAGCCCTATGATATATTATGGGCTCATGGTCTACCTGGT
TTATAGGATGTCTGTATGTACGAGTAAGGAAAAGTACATTTACACAAGGT
TTTCATACAGCGGTACTCGTAGATCTACTGTAAGTGGAACGGCTGCTATT
TGCGCGAATGTGAGGGTCCCACGCGGGGAGTTGATGACTGCAAGGGGGGC
GGAAATAATGTCCCGCTAATAACCGTAATAATGCGAGTGAACGCCCCCCC
CCCCGGACCGATGTGTCAAGCTCGATTTCTCCGTATAACAAAGGTGCAAA
ATACCAAACGACACGTTTTTCGGACAGCCCTCGACGAGATCTGTCCAACG
CCACCCTTTTCGGCGCTGACATTCTTCTTGCTGTGGAGATATCGAGCTTG
AAAAGTCGGGGGGGGCGTTTACTCGCATTATTACGGTACAGTATGTGCAA
TGCCCCGCTATGTATTCTGTGTGTAAGGATTTCTGTCCCCGGATTTCCCT
TTCCCCAAGCGTAAACACAAGTACGATGTACCAGTACTGTTTTGTATTAC
AGTAGTATATCGTACTATTAATAAAACACACCTATTAATAATTAACATTT
TGAACCCTTTTACTTGAGCAGTGCTGCAAAAAGTATCCCACGCAAATGGT
CGCAGTGGGTTAAAACCCCTAATATGGAGGTTTAGAACGGACGAATGCAG
GCTTGAAAAAGTGGAAACCCGGGTACAGCAGTCCTTGTGTACGGGATACC
ATACGCAGCGGGACAGACTGCCGTCATGTGCACATCAGTTTGCGTTACAC
GTGCGCGTACGACACAATGGAACGCAGCACAACACGAGACGACTAAATGG
ACACGACCAGACACAACTTGTGCGGGTGATGATGGTCTGTATTTGTGTGT
CCGTTATTTGTATTTGAATGCGCATGATTTGTGTGTGTGTGTGTGTTCAG
TGTTCAGGGTATATGCTTTCTCATGCACACGATGTGTGTGTGTGTCCACG
TTTGTTGTATCATGAGCAATTGCATGATTACTCAAAACACCCCCTCCCCT
GCCCCCTCTCCCCCTCCGACGTTCCGCCTCCGCTTCCGTACGCGTAATTT
ATATTTTTATTGTTCTCGGCAGGAAAATAAAATGGACGCCGCGCGGCTAG
ACGCTGAAGGTTCTGCCGTGGCCGCGGCGGCAGCGGC
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Coding sequence (CDS) from alignment at L-digitata_M_contig9982:4335..7821+

>mRNA_L-digitata_M_contig9982.2.1 ID=mRNA_L-digitata_M_contig9982.2.1|Name=mRNA_L-digitata_M_contig9982.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=291bp|location=Sequence derived from alignment at L-digitata_M_contig9982:4335..7821+ (Laminaria digitata LdigPH10_18mv male)
TCTCTGCGGTCGAACGTGCTGTATTTACTGCGCTCACTGGCTGACAGTAT
CCTTCTCTCTCTTGCGAGACACCTCCGAGGGTCGCGGACGATCCTGCGCC
GAGCGCCGAGGAAGGGCGCCGCGGCCATTTCTCTGCCCTTGGACAACCTC
CAAATTTGCTCTTGTTTTAGTGGGCTACTGCAGCGTAACAGCAAGAGGCG
GGCCTGCACAGGCAACACGGGGAGCAGGCAGGGGGATACCCGTGACCTCG
CAGACACTCCGAGGAAAATAAAATGGACGCCGCGCGGCTAG
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