mRNA_L-digitata_M_contig99608.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99608.1.1
Unique NamemRNA_L-digitata_M_contig99608.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99608.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99608contigL-digitata_M_contig99608:234..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog62928.azo3776
PFAMsDUF3592
Model size534
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue0.000757
EggNOG OGs28N9P@1|root,2ZBDN@2|Bacteria,1R70P@1224|Proteobacteria,2VYME@28216|Betaproteobacteria,2KZ34@206389|Rhodocyclales
DescriptionProtein of unknown function (DUF3592)
Cds size534
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408655.427233-CDS-L-digitata_M_contig99608:233..7671682408655.427233-CDS-L-digitata_M_contig99608:233..767Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99608 234..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99608.1.1prot_L-digitata_M_contig99608.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99608 234..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99608.1.1

>prot_L-digitata_M_contig99608.1.1 ID=prot_L-digitata_M_contig99608.1.1|Name=mRNA_L-digitata_M_contig99608.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=178bp
MDDGPSNEMATRPSAARLVVVASLSLAGCALLGLGFWGVQGALADQDLAQ
TDGVVVASSTKQISLMMRSNSPNAPTHDTVFDVQYQYTVAGDRYTGRRHS
YDELHEALTDPQEIVARLAAVAPGEPVAVYYSPADPAQAVLARREMGPAA
FAGGLGLGLLLAALFVLRLGFRDPGYS*
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mRNA from alignment at L-digitata_M_contig99608:234..767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99608.1.1 ID=mRNA_L-digitata_M_contig99608.1.1|Name=mRNA_L-digitata_M_contig99608.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=534bp|location=Sequence derived from alignment at L-digitata_M_contig99608:234..767+ (Laminaria digitata LdigPH10_18mv male)
ATGGATGATGGTCCGAGCAATGAGATGGCCACTCGCCCGAGCGCGGCCCG
ACTTGTGGTGGTGGCATCACTCAGTCTGGCGGGCTGCGCTTTGCTGGGGC
TTGGGTTCTGGGGCGTACAAGGGGCTCTGGCGGACCAGGATCTGGCGCAG
ACCGACGGGGTGGTCGTGGCCTCATCTACGAAGCAGATCTCCTTGATGAT
GCGCAGTAACTCGCCCAACGCGCCCACCCACGACACGGTCTTCGATGTGC
AGTACCAATACACGGTCGCCGGCGACCGCTACACGGGTCGCCGCCACTCA
TACGATGAGTTGCACGAGGCGCTGACGGATCCGCAAGAGATTGTCGCTCG
CCTGGCCGCAGTCGCACCCGGTGAGCCCGTTGCCGTCTACTACTCTCCTG
CCGATCCGGCCCAGGCCGTCTTGGCGCGGCGCGAGATGGGGCCGGCGGCC
TTTGCCGGAGGCCTAGGCTTGGGCCTGCTGCTCGCTGCTCTCTTTGTGCT
GCGGCTCGGTTTTCGAGACCCGGGGTACTCTTGA
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Coding sequence (CDS) from alignment at L-digitata_M_contig99608:234..767+

>mRNA_L-digitata_M_contig99608.1.1 ID=mRNA_L-digitata_M_contig99608.1.1|Name=mRNA_L-digitata_M_contig99608.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=534bp|location=Sequence derived from alignment at L-digitata_M_contig99608:234..767+ (Laminaria digitata LdigPH10_18mv male)
ATGGATGATGGTCCGAGCAATGAGATGGCCACTCGCCCGAGCGCGGCCCG
ACTTGTGGTGGTGGCATCACTCAGTCTGGCGGGCTGCGCTTTGCTGGGGC
TTGGGTTCTGGGGCGTACAAGGGGCTCTGGCGGACCAGGATCTGGCGCAG
ACCGACGGGGTGGTCGTGGCCTCATCTACGAAGCAGATCTCCTTGATGAT
GCGCAGTAACTCGCCCAACGCGCCCACCCACGACACGGTCTTCGATGTGC
AGTACCAATACACGGTCGCCGGCGACCGCTACACGGGTCGCCGCCACTCA
TACGATGAGTTGCACGAGGCGCTGACGGATCCGCAAGAGATTGTCGCTCG
CCTGGCCGCAGTCGCACCCGGTGAGCCCGTTGCCGTCTACTACTCTCCTG
CCGATCCGGCCCAGGCCGTCTTGGCGCGGCGCGAGATGGGGCCGGCGGCC
TTTGCCGGAGGCCTAGGCTTGGGCCTGCTGCTCGCTGCTCTCTTTGTGCT
GCGGCTCGGTTTTCGAGACCCGGGGTACTCTTGA
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