mRNA_L-digitata_M_contig99586.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig99586.1.1
Unique NamemRNA_L-digitata_M_contig99586.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig99586.1.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.320e-26
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 TRDVPFSTYGEDEATVAAADNLAAMPGFANMNGVAVGSDGRADPHSQLFRSSALGVETGPFVSQV 195
            TRDVPFS YGEDEATVAAADNLA MPGF NM GVAV  DGRADP SQLFR+SA GVETGPF+SQ+
Sbjct:  201 TRDVPFSQYGEDEATVAAADNLATMPGFQNMVGVAVDRDGRADPQSQLFRTSAFGVETGPFISQL 265
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BLAST of mRNA_L-digitata_M_contig99586.1.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.480e-23
Identity = 52/66 (78.79%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 TRDVPFSTYGEDEATVAAADNLAAMPGFANMNGVAVGSDGR-ADPHSQLFRSSALGVETGPFVSQV 195
            TRDVPFS YGEDEATVAAADNLA MPGFA++ GVAV  + R ADP SQLFRSSA GVETGPF+SQ+
Sbjct:  201 TRDVPFSQYGEDEATVAAADNLATMPGFADIVGVAVDPETRRADPQSQLFRSSAFGVETGPFISQL 266
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BLAST of mRNA_L-digitata_M_contig99586.1.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 90.1 bits (222), Expect = 1.520e-19
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 TRDVPFSTYGEDEATVAAADNLAAMPGFANMNGVAVGSDGRADPHSQLFRSSALGVETGPFVSQV 195
            TR+VPFS YGED  TV AA +LAAMPGFA++N VAVG DG  DP +QLFRSSA+GVE GP VSQ+
Sbjct:  195 TREVPFSQYGEDPTTVEAAASLAAMPGFADLNFVAVGPDGSPDPLTQLFRSSAVGVEIGPHVSQL 259
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BLAST of mRNA_L-digitata_M_contig99586.1.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 85.5 bits (210), Expect = 6.420e-18
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    4 RDVPFSTYGEDEATVAAADNLAAMPGFANMNGVAVGSDGRADPHSQLFRSSALGVETGPFVSQV 195
            RDVPF  YG DE T  AA NLA M GF N++ V++GSDG  DP SQLFR++ +GVETGPFVSQ+
Sbjct:  267 RDVPFMQYGTDEITTTAAANLAGMGGFPNLDAVSIGSDGTVDPFSQLFRATFVGVETGPFVSQL 330
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BLAST of mRNA_L-digitata_M_contig99586.1.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 85.1 bits (209), Expect = 8.630e-18
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    4 RDVPFSTYGEDEATVAAADNLAAMPGFANMNGVAVGSDGRADPHSQLFRSSALGVETGPFVSQV 195
            RDVPF  YG D+ TV AA NLA M GF N++ V++GSDG  DP SQLFR++ +GVETGPF+SQ+
Sbjct:  148 RDVPFMQYGTDDITVTAAANLAGMEGFPNLDAVSIGSDGTVDPLSQLFRATFVGVETGPFISQL 211
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig99586.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B7ZGM6_9PHAE3.320e-2683.08Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
Q4LDE6_9PHAE8.480e-2378.79Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA1.520e-1970.77Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
O82433_FUCDI6.420e-1864.06Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO8.630e-1862.50Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig99586contigL-digitata_M_contig99586:3..702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTP5
Model size195
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.86e-07
EggNOG OGs2EKT6@1|root,2SQKZ@2759|Eukaryota
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408654.683044-CDS-L-digitata_M_contig99586:2..601682408654.683044-CDS-L-digitata_M_contig99586:2..60Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99586 3..60 +
1682408654.6991005-CDS-L-digitata_M_contig99586:565..7021682408654.6991005-CDS-L-digitata_M_contig99586:565..702Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig99586 566..702 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig99586.1.1prot_L-digitata_M_contig99586.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig99586 3..702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig99586.1.1

>prot_L-digitata_M_contig99586.1.1 ID=prot_L-digitata_M_contig99586.1.1|Name=mRNA_L-digitata_M_contig99586.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=65bp
TRDVPFSTYGEDEATVAAADNLAAMPGFANMNGVAVGSDGRADPHSQLFR
SSALGVETGPFVSQV
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mRNA from alignment at L-digitata_M_contig99586:3..702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig99586.1.1 ID=mRNA_L-digitata_M_contig99586.1.1|Name=mRNA_L-digitata_M_contig99586.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=700bp|location=Sequence derived from alignment at L-digitata_M_contig99586:3..702+ (Laminaria digitata LdigPH10_18mv male)
ACCAGGGACGTACCCTTCTCTACGTACGGCGAAGACGAGGCAACCGTAGC
TGCAGCAGGTGATACACGCGGAAATATGTTATTTTCTGGGTTGCAGCACG
CAAGATGGTGGCTTCTTTGTATCTGAAGGAATGCATATCGTCAGTTTTCC
CAGCGCCATTCCTTGAAATCCAGCGACAAATCAGGGGCGGTGTAATAGGT
ACGACCCCGCTTGTGACCGAGACGCCCCTCACGTCTTTATCACGCATGAC
CGCGTGCAGAATGCAAAGTACCTTCATCATTAAAATCGACACAAAGAGCC
GCTCTGGCCACACACACTAGGATTAGGAGCCCCAGCAAGCGCTGAAATGA
GCACCAGGTACGTGTGGAAGCAAGGTTGGCCCTTGTCGCAACGCATGAGG
CACTCAAGCAAAGAAATGGTTCGTTTGGCTTCCGTCTTGGTGCCGCCACG
TTCAATGGCGAACGTTCATTCCTCACCTCTACTGGCGATCATCAGAACCC
TATAGTCATGATACTGAAACTGGCATTGCGTTAATAATCTGCACCTTGGA
TGATGCGTGCCAGACAACTTGGCCGCCATGCCGGGTTTCGCCAACATGAA
CGGGGTGGCAGTCGGGTCGGATGGCAGAGCGGATCCCCACTCGCAGCTGT
TTCGGTCCTCTGCTCTCGGTGTCGAAACAGGACCTTTCGTTTCCCAGGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig99586:3..702+

>mRNA_L-digitata_M_contig99586.1.1 ID=mRNA_L-digitata_M_contig99586.1.1|Name=mRNA_L-digitata_M_contig99586.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=195bp|location=Sequence derived from alignment at L-digitata_M_contig99586:3..702+ (Laminaria digitata LdigPH10_18mv male)
ACCAGGGACGTACCCTTCTCTACGTACGGCGAAGACGAGGCAACCGTAGC
TGCAGCAGACAACTTGGCCGCCATGCCGGGTTTCGCCAACATGAACGGGG
TGGCAGTCGGGTCGGATGGCAGAGCGGATCCCCACTCGCAGCTGTTTCGG
TCCTCTGCTCTCGGTGTCGAAACAGGACCTTTCGTTTCCCAGGTG
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