prot_L-digitata_M_contig9925.1.2 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig9925.1.2
Unique Name	prot_L-digitata_M_contig9925.1.2
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	360

Homology

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: D8LRK7_ECTSI (YqgFc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRK7_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.750e-94
Identity = 172/260 (66.15%), Postives = 192/260 (73.85%), Query Frame = 0

Query:  104 VHPSVAWLYP---SSATPXXXXXXXXXXXRKK-LRRTLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGISRKVEIDSLAASVILDDYFAGGGRDGAERVEP--GEATAATLFAAGRDGQGGRGXXXXXXXXXXXDMYGEGSRQRLDEMRAESARSAAAGDDFVPTMRAPKRRRK 357
            VHPSV+WLYP   SS T            + +  RRTLCVDYGTRRVGLAIG+GISPR VPGVTN G++LEV RQVL+RARGEGIRDIVVGLPLER     NGTE EMC+ VRGFAS+LAD GAASRP+A VFLWDERFSSAQA AMLDPYGGG+S KVEIDSLAAS+IL  +F  GG + AE+V+P  G  TA    AAGRDG+   G     XXXXX D YGEGSR+R  EMR ESARSAAAG+D        KRRR+
Sbjct:   44 VHPSVSWLYPPKPSSTTAVKTTDTRSQETKTRPSRRTLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDLEVARQVLVRARGEGIRDIVVGLPLER-----NGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSKVEIDSLAASLILKHFFEEGGTNNAEKVKPSTGVVTAEVWRAAGRDGE--EGEEDESXXXXXEDAYGEGSRRRFQEMREESARSAAAGEDSARRRAWRKRRRR 296

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A8J2T1I1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1I1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.200e-19
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 0

Query:  136 TLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGISRKVEIDSLAASVILDDYFA 274
            TL VDYG RRVG+ +G+G + R +  + +  +   VV ++L  AR E I  IVVGLPLE+     +G E   C   R FA    DA AA+ P+  + LWDERFSS +AEA+L    G       +D++AA VILDD+FA
Sbjct:   78 TLGVDYGLRRVGVCVGVGFASRPLEVIEHDEDIDAVVARLLQIARRERIASIVVGLPLEK-----DGAEGLQCAATRRFA----DALAAAAPATPLVLWDERFSSREAEALLAHRPGAA-----LDAVAACVILDDFFA 202

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A7S2ZDD4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZDD4_9RHOD)

HSP 1 Score: 94.7 bits (234), Expect = 4.050e-19
Identity = 66/157 (42.04%), Postives = 84/157 (53.50%), Query Frame = 0

Query:  134 RRTLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAML---DPYGGGISRKVEIDSLAASVILDDYFAGGGRDGAERVEPG 287
            ++TL VDYG RRVGLA+ +GI+PR +  + NRGN  EV R++   AR E +  +VVGLPL      S G E E     R F   L  A     P   ++LWDERFS+  A   L     Y   +   V  DS AA  IL+D+F   G D AE + PG
Sbjct:   22 KKTLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLN-----SKGDEGEQAAATRKFCEYLRIA----LPEPPIYLWDERFSTQTARNRLMSSKTYRNQVENFV--DSEAAVAILEDFFENSGDD-AELLYPG 166

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A7S3X7E5_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3X7E5_EMIHU)

HSP 1 Score: 94.4 bits (233), Expect = 5.240e-19
Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 0

Query:  135 RTLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRA-RGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGISRKVEIDSLAASVILDDYFAG 275
            RTL VD+G RR GLA+  GI+P  +  + ++   L  V   ++RA R EG   +V+G+P     Y S+G E E     R F  +LA   AA RP   V+LWDERFSSA+A +M    G G +R   ID +AA++IL+++F G
Sbjct:   62 RTLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMP-----YNSSGGEGEQAVATRRFGELLARE-AAPRP---VYLWDERFSSAEA-SMRANAGDGAARGQSIDDVAAAIILEEFFEG 193

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: R1ED05_EMIHU (YqgFc domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ED05_EMIHU)

HSP 1 Score: 94.4 bits (233), Expect = 6.100e-19
Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 0

Query:  135 RTLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRA-RGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGISRKVEIDSLAASVILDDYFAG 275
            RTL VD+G RR GLA+  GI+P  +  + ++   L  V   ++RA R EG   +V+G+P     Y S+G E E     R F  +LA   AA RP   V+LWDERFSSA+A +M    G G +R   ID +AA++IL+++F G
Sbjct:   26 RTLGVDFGLRRTGLAVSAGIAPLPIGIIDDQSANLTAVAAQVVRAARSEGASQLVLGMP-----YNSSGGEGEQAVATRRFGELLARE-AAPRP---VYLWDERFSSAEA-SMRANAGDGAARGQSIDDVAAAIILEEFFEG 157

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A7S4D691_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D691_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 5.960e-18
Identity = 62/153 (40.52%), Postives = 89/153 (58.17%), Query Frame = 0

Query:  135 RTLCVDYGTRRVGLAIGIG-ISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGISRKVEIDSLAASVILDDYFAGGGRDGAERVEP 286
            R L VDYGT+RVG+AI  G I+PR V  + N G++ +V+R++   AR E I   VVG+PL+R     +G E       R F+  LAD  +   P   V++W+E FSS  AE++L     G      +D++AA +IL+DYF+  G  GAE + P
Sbjct:   74 RVLGVDYGTKRVGIAISAGGIAPRPVKIIQNSGDDSQVIREIKFMARAEQISSFVVGVPLQR-----DGAETNQSIINRNFSQTLADEVS---PRVPVYVWNEAFSSVAAESLLLHKSRG-EIDACLDAVAACMILEDYFSEDGW-GAELIPP 216

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A0M9UCW6_9CHLR (Putative pre-16S rRNA nuclease n=2 Tax=Ardenticatena maritima TaxID=872965 RepID=A0A0M9UCW6_9CHLR)

HSP 1 Score: 83.6 bits (205), Expect = 8.070e-16
Identity = 56/149 (37.58%), Postives = 88/149 (59.06%), Query Frame = 0

Query:  139 VDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGI-SRKVEIDSLAASVILDDYFAGGGRDGAERVEP 286
            +DYG RRVG+A G+G++PR V  V   G+   ++ +++  AR E    I+VGLPL      ++G+E E     R FA +LA     ++    V+LWDER++S  A+  +   G    +R+ ++D++AA+V+L+ YF   G  GAERV P
Sbjct:    1 MDYGKRRVGVAAGVGMAPRPV-AVLPHGSLESLIARLVELARAEQAAKIIVGLPLN-----TDGSEGEQAAQCRAFAEVLA-----AQTDIPVYLWDERYTSKDAQQQMIAAGTTQKARREKLDAVAAAVMLEHYFEHQGV-GAERVIP 137

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A7S3E813_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E813_9RHOD)

HSP 1 Score: 82.8 bits (203), Expect = 2.640e-15
Identity = 50/114 (43.86%), Postives = 64/114 (56.14%), Query Frame = 0

Query:  134 RRTLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAML 247
            ++TL VDYG RRVGLA+ +GI+PR +  + NRGN  EV R++   AR E +  +VVGLPL      S G E E     R F   L  A     P   ++LWDERFS+  A   L
Sbjct:   22 KKTLAVDYGLRRVGLALSVGIAPRRLNKIYNRGNLGEVARRISDVARREMVLQVVVGLPLN-----SKGDEGEQAAATRKFCEYLRIA----LPEPPIYLWDERFSTQTARNRL 126

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A7S2WGV2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WGV2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 5.410e-13
Identity = 58/159 (36.48%), Postives = 82/159 (51.57%), Query Frame = 0

Query:  134 RRTLCVDYGTRRVGLAIGIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGGGISRKVE------IDSLAASVILDDYFAGGGRDGAERVEP 286
            R  L VDYGTRR+GLA+  G SPR V  + + GN  E+V ++L  A+GE    +VVG PL +     +G E       R F  +LA   A       V++ DER+SSA+AEA L      +S+K +      +D+ +A  IL  +F        ER+ P
Sbjct:   57 RLALGVDYGTRRIGLAMSAGFSPRPVLTIKHTGNTTEMVHKILNIAKGEDAELLVVGNPLNQ-----DGEENFQSDLTRNFTQVLASEVARRSLKLGVYMKDERYSSAEAEANLQ----FVSKKSKGRMLAVLDAESACSILRAFFNEPVDSSVERITP 206

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BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Match: A0A7S0L5P9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5P9_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 6.580e-13
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = 0

Query:  135 RTLCVDYGTRRVGLAIGIGISPRV-----VPGVTNR--GNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTSNGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPYGG-GISRKVEIDSLAASVILDDYFAG 275
            R+L VD GT R G+A+  G +P       VP       G+  ++V+ V   A+ EG+  IVVG+P     Y   G E +  Q  R FA MLA+   A  P   VFLWDERFS+A+A+  +  +GG G +    +D++AA+VIL+ +++G
Sbjct:   16 RSLGVDLGTVRTGIAVSSGYAPLPLTVLRVPRAAEEPVGDVSQLVQLVCNAAQREGVDQIVVGMP-----YNHTGGEGKQAQYTRQFAQMLANV--ARLP---VFLWDERFSTAEAQHRM--HGGFGAASGEAVDAVAAAVILEAFYSG 152

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot

BLAST of mRNA_L-digitata_M_contig9925.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRK7_ECTSI	3.750e-94	66.15	YqgFc domain-containing protein n=2 Tax=Ectocarpus...	[more]
A0A8J2T1I1_9STRA	2.200e-19	44.60	Hypothetical protein n=2 Tax=Pelagomonas calceolat...	[more]
A0A7S2ZDD4_9RHOD	4.050e-19	42.04	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7S3X7E5_EMIHU	5.240e-19	42.25	Hypothetical protein (Fragment) n=1 Tax=Emiliania ...	[more]
R1ED05_EMIHU	6.100e-19	42.25	YqgFc domain-containing protein n=2 Tax=Emiliania ...	[more]
A0A7S4D691_HETAK	5.960e-18	40.52	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A0M9UCW6_9CHLR	8.070e-16	37.58	Putative pre-16S rRNA nuclease n=2 Tax=Ardenticate...	[more]
A0A7S3E813_9RHOD	2.640e-15	43.86	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7S2WGV2_9STRA	5.410e-13	36.48	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S0L5P9_9EUKA	6.580e-13	38.26	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 134..243 e-value: 1.0E-7 score: 41.6
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 133..281 e-value: 1.4E-23 score: 85.3
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 135..274 e-value: 1.2E-21 score: 77.5
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 119..288
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 134..277 score: 16.990309
IPR005227	Putative pre-16S rRNA nuclease	CDD	cd16964	YqgF	coord: 137..273 e-value: 2.57872E-30 score: 110.655
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..337
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 292..359
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..129
None	No IPR available	PANTHER	PTHR33317:SF4	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 119..288
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 134..274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig9925	contig	L-digitata_M_contig9925:435..2217 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig9925.1.2	mRNA_L-digitata_M_contig9925.1.2	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig9925 405..2217 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig9925.1.2 ID=prot_L-digitata_M_contig9925.1.2|Name=mRNA_L-digitata_M_contig9925.1.2|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=360bp
MAEARARRPRRPRQSLAATVAVCFCSLSVLAPPYLPGHAYVIPAAATRAR
LLRRLVATTATYRRCNATPAEQAEEMMPFSSGDTDGDSDQQAEYDDNDDN
EDDVHPSVAWLYPSSATPPPSGGSSSTASRKKLRRTLCVDYGTRRVGLAI
GIGISPRVVPGVTNRGNELEVVRQVLIRARGEGIRDIVVGLPLERQVYTS
NGTEAEMCQTVRGFASMLADAGAASRPSASVFLWDERFSSAQAEAMLDPY
GGGISRKVEIDSLAASVILDDYFAGGGRDGAERVEPGEATAATLFAAGRD
GQGGRGGGEEEQQEEEEDMYGEGSRQRLDEMRAESARSAAAGDDFVPTMR
APKRRRKRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006641	YqgF/RNaseH-like_dom
IPR037027	YqgF/RNaseH-like_dom_sf
IPR005227	YqgF
IPR012337	RNaseH-like_sf