prot_L-digitata_M_contig9818.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9818.1.1
Unique Nameprot_L-digitata_M_contig9818.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length117
Homology
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: D7G8N0_ECTSI (50S ribosomal protein L24, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8N0_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 2.340e-64
Identity = 103/116 (88.79%), Postives = 106/116 (91.38%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSAGLSKDLFEK+NVRSLPVR GDEVMV RGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKV ITKIKMDKDR ALL RKDR+R+GGKPA    DA VNMAGVD
Sbjct:   56 MSAGLSKDLFEKYNVRSLPVRAGDEVMVVRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVQITKIKMDKDRVALLARKDRSRNGGKPAAGAADADVNMAGVD 171          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A835YVZ0_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 5.210e-46
Identity = 82/116 (70.69%), Postives = 91/116 (78.45%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSK+L  K+NVRS+PVRK DEVMV RG YKNREGKV  CYRRK+VIHIER+TREKANG TV +GIHPSKV ITK+K+DKDRK LLERK R    G  A    +  VNMAGVD
Sbjct:   30 MSASLSKELQAKYNVRSVPVRKDDEVMVVRGHYKNREGKVTACYRRKYVIHIERVTREKANGATVQIGIHPSKVVITKLKLDKDRKELLERKQRKSKAG-AAKKASEKDVNMAGVD 144          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A3R5U3L5_9STRA (50S ribosomal protein L24, chloroplastic n=4 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A3R5U3L5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.230e-42
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSKDL  K+ VRS+P+RK DEV V RG++KNR+GKV   YR+KFVIHI+R+TREKANG TV+VGIHPSKV ITK+K++K RKA+LERK RT +  K  G   +A VN+AGVD
Sbjct:   31 MSAPLSKDLRAKYKVRSIPIRKEDEVTVVRGSFKNRDGKVTQVYRKKFVIHIDRVTREKANGATVNVGIHPSKVIITKLKLNKSRKAILERKARTSAADKNKGKLTEADVNLAGVD 146          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A7S2C9Q4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9Q4_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.190e-42
Identity = 74/116 (63.79%), Postives = 92/116 (79.31%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSKDL  K+NVRS+P+RK DEVMV RG++KNREGKV   YR+K+VIHIER++R+KANG  V++GIHPS   ITK+K+DKDRK +L+RKDR++   K      DA VNMAGVD
Sbjct:   30 MSASLSKDLVSKYNVRSMPIRKDDEVMVVRGSHKNREGKVIQVYRKKYVIHIERVSRDKANGAPVNIGIHPSNCVITKLKLDKDRKNILDRKDRSKDSSKGL---SDADVNMAGVD 142          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A7J6P5Z0_PEROL (60S ribosomal protein L26 n=7 Tax=Alveolata TaxID=33630 RepID=A0A7J6P5Z0_PEROL)

HSP 1 Score: 145 bits (365), Expect = 2.260e-42
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSK+L  K+NVRS+P+RK DEVMV RG Y +REGKV  CYR+KFVIHIER+TR+K NG+  +VG+HPSKV ITK+KMDKDRKALLERK+R++  GK +   +D  V MA VD
Sbjct:   30 MSAPLSKELRAKYNVRSVPIRKDDEVMVVRGHYSDREGKVTACYRKKFVIHIERLTRDKVNGSHANVGVHPSKVVITKLKMDKDRKALLERKNRSKDSGKKSYTEKD--VAMAQVD 143          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: F0YHH6_AURAN (50S ribosomal protein L24, chloroplastic n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH6_AURAN)

HSP 1 Score: 144 bits (363), Expect = 3.900e-42
Identity = 76/116 (65.52%), Postives = 88/116 (75.86%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSK+L  K+NVRS+PVRK DEVMV RG YKNREGKV  CYRRKFVIH+ERITR+KANG  V+VGI PS   ITK+K+DKDRK +L RKDR++ G          G N+AGVD
Sbjct:   30 MSASLSKELQAKYNVRSIPVRKDDEVMVVRGIYKNREGKVTACYRRKFVIHVERITRDKANGAQVNVGIQPSNCIITKLKLDKDRKTILGRKDRSKGGAVE-------GANLAGVD 138          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A7S2V566_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V566_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.860e-42
Identity = 73/116 (62.93%), Postives = 88/116 (75.86%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSKDL  K+NVRS+P+RK DEV VTRG +KNREGKV  CYR+K+V+H+ER T+EK NG  VHVGI PS V ITK+K+DK+RKA+LERKDR +   K  G   +  VNM  VD
Sbjct:   30 MSAPLSKDLQAKYNVRSMPIRKDDEVQVTRGYFKNREGKVVQCYRKKYVVHVERCTKEKTNGAQVHVGIAPSNVVITKLKLDKNRKAILERKDRAKGAEKGKGKYTETDVNMGNVD 145          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: M2VUW9_GALSU (60S ribosomal protein L26e n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VUW9_GALSU)

HSP 1 Score: 141 bits (356), Expect = 2.380e-41
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVN-MAGVD 116
            MSA LSK+L  K+NVRSLP+RK DEV++ RGAYK REGKV TCYR+K+ IH+ER+TREKANG TV VGIHPS V I+K+K+DKDRKA LERK+R R   K  G   +A V+ MA VD
Sbjct:    1 MSAPLSKELRTKYNVRSLPIRKEDEVIIVRGAYKGREGKVTTCYRKKYRIHVERVTREKANGMTVPVGIHPSNVVISKLKLDKDRKATLERKNRDRLMDKGKGKFTEAEVSAMADVD 117          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A7S2D046_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D046_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.650e-41
Identity = 77/116 (66.38%), Postives = 91/116 (78.45%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSK+L EK+NVR++P+RK DEVMV RG  KNREGKV   YR+K+VIHIERITR+KAN   V++GIHPS V ITK+K+DKDRKA+LERKDR  S    + A  D  VNMAGVD
Sbjct:   43 MSATLSKELQEKYNVRTMPIRKDDEVMVMRGNQKNREGKVIQVYRKKYVIHIERITRDKANQAPVNIGIHPSNVQITKLKLDKDRKAILERKDRKSS----SDAVTDTEVNMAGVD 154          
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Match: A0A451FLG4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Eustigmatophyceae sp. Mont 10/10-1w TaxID=2506145 RepID=A0A451FLG4_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.940e-41
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 0
Query:    1 MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVIHIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGKPAGAGQDAGVNMAGVD 116
            MSA LSKDL  K+ VRS+P+RK DEV V RG +KN +GKV   YR+KFVIHI+RITREKANG TV+VGIHPSKV ITK+KM+K RKA+LERK R     K  G   +A VN+AGVD
Sbjct:   30 MSAPLSKDLQAKYKVRSMPIRKEDEVTVVRGRHKNSDGKVTQVYRKKFVIHIDRITREKANGATVNVGIHPSKVVITKLKMNKSRKAILERKARKSDADKAKGKFTEADVNLAGVD 145          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9818.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8N0_ECTSI2.340e-6488.7950S ribosomal protein L24, chloroplastic n=2 Tax=E... [more]
A0A835YVZ0_9STRA5.210e-4670.6950S ribosomal protein L24, chloroplastic n=1 Tax=T... [more]
A0A3R5U3L5_9STRA1.230e-4265.5250S ribosomal protein L24, chloroplastic n=4 Tax=E... [more]
A0A7S2C9Q4_9STRA2.190e-4263.7950S ribosomal protein L24, chloroplastic n=1 Tax=F... [more]
A0A7J6P5Z0_PEROL2.260e-4265.5260S ribosomal protein L26 n=7 Tax=Alveolata TaxID=... [more]
F0YHH6_AURAN3.900e-4265.5250S ribosomal protein L24, chloroplastic n=1 Tax=A... [more]
A0A7S2V566_9STRA6.860e-4262.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M2VUW9_GALSU2.380e-4165.8160S ribosomal protein L26e n=1 Tax=Galdieria sulph... [more]
A0A7S2D046_9STRA3.650e-4166.3850S ribosomal protein L24, chloroplastic n=1 Tax=D... [more]
A0A451FLG4_9STRA3.940e-4165.5250S ribosomal protein L24, chloroplastic n=1 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 19..46
e-value: 1.0E-5
score: 35.0
IPR005824KOWPFAMPF00467KOWcoord: 22..53
e-value: 6.7E-7
score: 29.0
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealTIGRFAMTIGR01080TIGR01080coord: 1..92
e-value: 1.7E-34
score: 116.6
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPFAMPF16906Ribosomal_L26coord: 1..92
e-value: 6.4E-26
score: 91.0
IPR005756Ribosomal protein L26/L24, eukaryotic/archaealPANTHERPTHR1114360S RIBOSOMAL PROTEIN L26 FAMILY MEMBERcoord: 1..106
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 1..111
e-value: 4.9E-38
score: 132.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..116
IPR041988Ribosomal protein L26/L24, KOW domainCDDcd06089KOW_RPL26coord: 23..74
e-value: 3.97227E-12
score: 54.8282
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 1..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9818contigL-digitata_M_contig9818:2960..8879 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9818.1.1mRNA_L-digitata_M_contig9818.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9818 2956..8879 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9818.1.1 ID=prot_L-digitata_M_contig9818.1.1|Name=mRNA_L-digitata_M_contig9818.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=117bp
MSAGLSKDLFEKHNVRSLPVRKGDEVMVTRGAYKNREGKVETCYRRKFVI
HIERITREKANGNTVHVGIHPSKVHITKIKMDKDRKALLERKDRTRSGGK
PAGAGQDAGVNMAGVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR005756Ribosomal_L26/L24P_euk/arc
IPR014722Rib_L2_dom2
IPR041988KOW_RPL26/RPL24
IPR008991Translation_prot_SH3-like_sf