mRNA_L-digitata_M_contig101383.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101383.1.1
Unique NamemRNA_L-digitata_M_contig101383.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-21
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQNQKAKD 147
            F +C KSFRSKRLDDGE+KCINVCA+K+IKLT RVALRFQDIQ QKAKD
Sbjct:   33 FDECSKSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKD 81
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A024TE29_9STRA (zf-Tim10_DDP domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TE29_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.420e-9
Identity = 23/43 (53.49%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQ 129
            F++C++SFRSK+L+D E  C+N+CA+KF+K T RV +RF + Q
Sbjct:   39 FNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAEAQ 81
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A024G9K4_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9K4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.330e-9
Identity = 22/41 (53.66%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQD 123
            F++C+ SFRSK+LDD ES C+N CA+KF++ T R ++R Q+
Sbjct:   34 FTECVHSFRSKKLDDKESNCVNTCAEKFLRHTMRSSIRLQE 74
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A7S2CLT1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLT1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.430e-8
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQ 129
            F+ CIK+FRS  L D ESKC+N CA+KFIKL  R   R+Q+ Q
Sbjct:   59 FNDCIKTFRSSTLSDQESKCVNSCAEKFIKLGRRAGYRYQEHQ 101
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A7S3BME1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BME1_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 2.680e-8
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQNQ 135
            FS+C+  FRSK L   E KCIN CA+KFIK +GRV  RF ++  Q
Sbjct:   59 FSECVNGFRSKALTAPEEKCINTCAEKFIKHSGRVGQRFGELTAQ 103
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A388M117_CHABU (zf-Tim10_DDP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M117_CHABU)

HSP 1 Score: 53.9 bits (128), Expect = 3.450e-8
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDI 126
            F+ C+ SFR K LD  E  C+  C +KF+K TGRV+LRFQ+I
Sbjct:   41 FNNCVDSFRRKTLDKTEETCVKRCVEKFLKHTGRVSLRFQEI 82
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: W4FPA0_9STRA (zf-Tim10_DDP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.760e-8
Identity = 23/43 (53.49%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQ 129
            F++C++SFRSK+L+D E  C+N+CA+KF+K T RV +RF + Q
Sbjct:   39 FNECVQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAEAQ 81
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: A0A1Y1IU56_KLENI (Mitochondrial import inner membrane translocon protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IU56_KLENI)

HSP 1 Score: 52.8 bits (125), Expect = 9.830e-8
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQN 132
            FS C+ +FR K LD  E KCI  CA+KF+K T RV++RF ++ +
Sbjct:   41 FSNCVDTFRRKTLDKDEDKCIRRCAEKFLKHTARVSMRFAELNS 84
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: B7G5E1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5E1_PHATC)

HSP 1 Score: 52.8 bits (125), Expect = 1.030e-7
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQNQKAK 144
            F  C+ SFRSK LD  E  CI  CAD+++K+T RV LRF + Q  + K
Sbjct:   39 FDGCVTSFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQQK 86
[Close]
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Match: G4YG78_PHYSP (zf-Tim10_DDP domain-containing protein n=12 Tax=Peronosporaceae TaxID=4777 RepID=G4YG78_PHYSP)

HSP 1 Score: 52.0 bits (123), Expect = 1.890e-7
Identity = 21/41 (51.22%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQD 123
            FS C+ +FRSK+LDD E+ C+N CA+KF++ T R ++R Q+
Sbjct:   34 FSDCVHAFRSKKLDDKETSCVNNCAEKFLRHTMRSSVRLQE 74
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L457_9PHAE1.340e-2183.67zf-Tim10_DDP domain-containing protein n=2 Tax=Ect... [more]
A0A024TE29_9STRA1.420e-953.49zf-Tim10_DDP domain-containing protein n=4 Tax=Aph... [more]
A0A024G9K4_9STRA8.330e-953.66zf-Tim10_DDP domain-containing protein n=1 Tax=Alb... [more]
A0A7S2CLT1_9STRA1.430e-858.14Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3BME1_9EUKA2.680e-855.56Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A388M117_CHABU3.450e-854.76zf-Tim10_DDP domain-containing protein n=1 Tax=Cha... [more]
W4FPA0_9STRA4.760e-853.49zf-Tim10_DDP domain-containing protein n=2 Tax=Aph... [more]
A0A1Y1IU56_KLENI9.830e-850.00Mitochondrial import inner membrane translocon pro... [more]
B7G5E1_PHATC1.030e-750.00Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
G4YG78_PHYSP1.890e-751.22zf-Tim10_DDP domain-containing protein n=12 Tax=Pe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101383contigL-digitata_M_contig101383:255..401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6I8
Preferred nameTIMM9
PFAMszf-Tim10_DDP
Model size147
Max annot lvl2759|Eukaryota
KEGG koko:K17777,ko:K17779
KEGG TC3.A.8.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001666,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007155,GO:0007160,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008270,GO:0008320,GO:0008565,GO:0009628,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019866,GO:0022610,GO:0022804,GO:0022857,GO:0022884,GO:0031090,GO:0031224,GO:0031589,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0036293,GO:0036294,GO:0040008,GO:0040014,GO:0042221,GO:0042719,GO:0042721,GO:0042802,GO:0042803,GO:0042886,GO:0042887,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046983,GO:0048638,GO:0050789,GO:0050793,GO:0050877,GO:0050896,GO:0050954,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070482,GO:0070585,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072321,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990351,GO:1990542
Exons1
Evalue7.69e-23
EggNOG OGsKOG3479@1|root,KOG3479@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial protein import TIM9.10 complex subunit, Tim9 homolog
Ec32 orthologEc-05_006340.1
Descriptionchaperone-mediated protein transport
Cds size147
COG categoryO
BRITEko00000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406618.304447-CDS-L-digitata_M_contig101383:254..4011682406618.304447-CDS-L-digitata_M_contig101383:254..401Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101383 255..401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101383.1.1prot_L-digitata_M_contig101383.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101383 255..401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101383.1.1

>prot_L-digitata_M_contig101383.1.1 ID=prot_L-digitata_M_contig101383.1.1|Name=mRNA_L-digitata_M_contig101383.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=49bp
FSKCIKSFRSKRLDDGESKCINVCADKFIKLTGRVALRFQDIQNQKAKD
back to top

mRNA from alignment at L-digitata_M_contig101383:255..401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101383.1.1 ID=mRNA_L-digitata_M_contig101383.1.1|Name=mRNA_L-digitata_M_contig101383.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=147bp|location=Sequence derived from alignment at L-digitata_M_contig101383:255..401- (Laminaria digitata LdigPH10_18mv male)
TTTTCTAAATGTATAAAGAGCTTCCGAAGCAAGCGGCTAGACGATGGGGA
GTCGAAGTGCATCAACGTCTGCGCGGACAAATTCATCAAGCTCACCGGCC
GAGTGGCGTTAAGGTTCCAAGACATCCAGAATCAGAAGGCTAAGGAC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig101383:255..401-

>mRNA_L-digitata_M_contig101383.1.1 ID=mRNA_L-digitata_M_contig101383.1.1|Name=mRNA_L-digitata_M_contig101383.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=147bp|location=Sequence derived from alignment at L-digitata_M_contig101383:255..401- (Laminaria digitata LdigPH10_18mv male)
TTTTCTAAATGTATAAAGAGCTTCCGAAGCAAGCGGCTAGACGATGGGGA
GTCGAAGTGCATCAACGTCTGCGCGGACAAATTCATCAAGCTCACCGGCC
GAGTGGCGTTAAGGTTCCAAGACATCCAGAATCAGAAGGCTAAGGAC
back to top