prot_L-digitata_M_contig101164.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig101164.1.1
Unique Nameprot_L-digitata_M_contig101164.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length222
Homology
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BLAST of mRNA_L-digitata_M_contig101164.1.1 vs. uniprot
Match: A0A7Y4JW95_9DELT (Uncharacterized protein n=1 Tax=Corallococcus exercitus TaxID=2316736 RepID=A0A7Y4JW95_9DELT)

HSP 1 Score: 54.7 bits (130), Expect = 3.100e-5
Identity = 23/46 (50.00%), Postives = 26/46 (56.52%), Query Frame = 0 
Query:   87 TQLCGTQCVDTLSDTSHCGGCNVACTAMEFCNAGTCAPTCTAPRTQ 132
            T  CG  CV+T SD +HCGGC +ACT  E C AG C   C     Q
Sbjct:   45 TTQCGDTCVNTASDPAHCGGCGMACTTTEACEAGACVAVCRIDEQQ 90
[Close]
BLAST of mRNA_L-digitata_M_contig101164.1.1 vs. uniprot
Match: A0A3A8S7Q9_9DELT (Uncharacterized protein n=14 Tax=Corallococcus TaxID=83461 RepID=A0A3A8S7Q9_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 7.680e-5
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0 
Query:   87 TQLCGTQCVDTLSDTSHCGGCNVACTAMEFCNAGTCAPTC 126
            T  CG  CV+T SD++HCGGC+ ACT+ E C AG C   C
Sbjct:   51 TTQCGDTCVNTDSDSAHCGGCDQACTSTEACEAGVCVAVC 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101164.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y4JW95_9DELT3.100e-550.00Uncharacterized protein n=1 Tax=Corallococcus exer... [more]
A0A3A8S7Q9_9DELT7.680e-555.00Uncharacterized protein n=14 Tax=Corallococcus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006969Stigma-specific protein Stig1PFAMPF04885Stig1coord: 82..123
e-value: 4.6E-7
score: 30.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101164contigL-digitata_M_contig101164:2..667 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101164.1.1mRNA_L-digitata_M_contig101164.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig101164 2..667 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig101164.1.1 ID=prot_L-digitata_M_contig101164.1.1|Name=mRNA_L-digitata_M_contig101164.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=222bp
AGFPDADSDAGFPDADSDAGFPDAESDAGFPDADSDAGFPDADSDAGTPD
ADAGTPDADAGTPDADAGTPDADAGAPDGGPICPLGTQLCGTQCVDTLSD
TSHCGGCNVACTAMEFCNAGTCAPTCTAPRTQCPGGCFYVQNDPNNCGTC
GNACGSNVCYQGGCVAPSAGHVVVIGHDMRSTHPATVNIAGNAVFLPVQS
PLTVGIFRERTWSSTEQAIDTV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006969Stig1