mRNA_L-digitata_M_contig10116.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10116.3.1
Unique NamemRNA_L-digitata_M_contig10116.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A6H5J6N0_9PHAE (Epimerase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J6N0_9PHAE)

HSP 1 Score: 428 bits (1100), Expect = 5.660e-149
Identity = 205/219 (93.61%), Postives = 215/219 (98.17%), Query Frame = 1 
Query:    1 AGKALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            +GKALIAQNKGGGHGE+GYHLALKLIEKDISVT+LQD AG NKD QPFASYG+LESKGATIVWGDFSEGVGKL+PEGESFDYVFDNYAKDVDTCK+LADC+KAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEK+VA+LGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNE AV+QV
Sbjct:   49 SGKALIAQNKGGGHGELGYHLALKLIEKDISVTLLQDGAGKNKDNQPFASYGDLESKGATIVWGDFSEGVGKLIPEGESFDYVFDNYAKDVDTCKDLADCSKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKYVADLGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNERAVDQV 267
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BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A836C9R0_9STRA (Epimerase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R0_9STRA)

HSP 1 Score: 312 bits (799), Expect = 1.090e-102
Identity = 155/221 (70.14%), Postives = 177/221 (80.09%), Query Frame = 1 
Query:    1 AGKALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSE--GVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            AGKALI QNKGGGHGE+GYHLA  L EK + VT+LQDSA   K KQPFASYGELESKG  +VWGDF+   GVG  +P  E+FDYVFDNYAKD  T K++A  AK+W VKNY YVSS GMYK+++EVP  E+  VKE+GQRQVE    E+GLPWTSFRPQYIYGPLTNKRDYLDWF+DRVV  +   PLP HGDQ VA+THAEDVASMLA+VVGN +AV Q+
Sbjct:   45 AGKALIVQNKGGGHGELGYHLANILQEKGVEVTLLQDSAAK-KAKQPFASYGELESKGVKVVWGDFAGEGGVGASLPSDEAFDYVFDNYAKDPATAKDVAVAAKSWSVKNYVYVSSAGMYKNTEEVPLVETDAVKETGQRQVELMAEEMGLPWTSFRPQYIYGPLTNKRDYLDWFYDRVVWAMSPFPLPHHGDQFVAITHAEDVASMLAAVVGNPSAVGQI 264
[Close]
BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A7S2XZ15_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ15_9STRA)

HSP 1 Score: 253 bits (647), Expect = 6.590e-80
Identity = 127/223 (56.95%), Postives = 153/223 (68.61%), Query Frame = 1 
Query:    1 AGKALIAQNKGGGHGEIGYHLALKLIEKDI----SVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            A  ALI QNKGGGHGE+GYHLA  L   ++    SVT++ D       K PF  YG L+  G  ++W D        +   ++F YVFDNYAKD DTCK +AD +K W V NY YVSS GMYK +DEVP TES+  KE+GQ+ VE++ A +GLPWT+FRPQYIYGPLTNKRDYLDWFF RV    + +PLP  GDQ VA+THA DVASM ASV+GN+ A  QV
Sbjct:   47 ASAALIVQNKGGGHGELGYHLAKILSSPEVPQVTSVTIINDGGPEPVQKLPFTEYGGLD--GVDVIWADIKSADIPALLGDKTFKYVFDNYAKDEDTCKAVADLSKKWDVDNYVYVSSAGMYKSTDEVPMTESTATKETGQKAVEEYAASIGLPWTAFRPQYIYGPLTNKRDYLDWFFHRVCRDRD-VPLPNSGDQFVAITHAADVASMFASVIGNDKAPEQV 266
[Close]
BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A7S2BN61_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BN61_9STRA)

HSP 1 Score: 249 bits (635), Expect = 1.840e-78
Identity = 127/219 (57.99%), Postives = 158/219 (72.15%), Query Frame = 1 
Query:    4 GKALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKD-KQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            G+ALI QNKGGGHGE+G+HLA  L +K ISVT+L D     K  KQP+ SY +LE KG  IVW D +      + EG +F+YVFDN++KD D+     D AK+W V NY +VSS GMY+ S   P  ES+DVK SGQR+VE  +AE GLPWTSFRPQYIYGP TNKRDYLDWFFDR V G + +P+P  G Q V++T+A+DVAS+LAS +GN +AV +V
Sbjct:   62 GRALIIQNKGGGHGELGFHLAGILEKKGISVTLLHDGGPEPKSGKQPWDSYTQLEGKGVEIVWSDVAASGSASLKEGPAFEYVFDNWSKDPDSATGFVDLAKSWDVSNYVFVSSAGMYESSVPQPMVESADVKLSGQRKVEVLLAENGLPWTSFRPQYIYGPNTNKRDYLDWFFDRAVRG-KTLPIPEDGSQGVSITNAQDVASLLASPLGNADAVGEV 279
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BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A6V1PCS3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PCS3_HETAK)

HSP 1 Score: 236 bits (601), Expect = 1.220e-73
Identity = 125/221 (56.56%), Postives = 156/221 (70.59%), Query Frame = 1 
Query:    4 GKALIAQNKGGGHGEIGYHLALKLIEKD--ISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFS-EGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            G ALI QNKGGGHGEIG+HLA  L E+    +VT+LQD  G    K PF+ YGELE+ G  +VW D   EGV +L   G+ FDYVFDN++KD  T K +AD AKA  V+ +AYVSSGGMYK    +P TE +D KE+GQR+VEK++   GLPWT+FRPQYIYGP TNKRDYLD+F DR+    + +P+P  G+QL ++THA DVA+MLA+   N  A  QV
Sbjct:   42 GSALIVQNKGGGHGEIGFHLAKILKEEKGCDAVTILQDG-GEPSGKLPFSRYGELEALGCEVVWCDVKGEGVARLA--GKKFDYVFDNWSKDEATVKPIADMAKAQNVETFAYVSSGGMYKYPPTLPITEDADAKETGQREVEKYLDAAGLPWTAFRPQYIYGPATNKRDYLDYFVDRISRD-QPVPIPHSGEQLASVTHAYDVAAMLAAATANPKAAKQV 258
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BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A0G4IC15_9ALVE (Epimerase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IC15_9ALVE)

HSP 1 Score: 232 bits (592), Expect = 4.410e-72
Identity = 121/219 (55.25%), Postives = 146/219 (66.67%), Query Frame = 1 
Query:    1 AGKALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            +G ALI QNKGGGHGEIG+HLA  L  K I VT+L D  G+   K PF  Y +L +    ++W D S      +  G++FDYVFDN +K+    K +AD AK WGVKNY YVSSGGMYK   E+P  E   VKE+GQ +VEK+   +GLPW+SFRPQYIYGP TNKRDYLD+FF RV +    IP+P        LTH EDVASMLA+V+GN NA  QV
Sbjct:   49 SGNALILQNKGGGHGEIGFHLAKLLNSKGIGVTILNDG-GSPISKTPFNMYDQLSN--TEVIWTDLSSADVPSLLSGKTFDYVFDNVSKNEAGAKTVADLAKQWGVKNYVYVSSGGMYKGGVEMPMEEGDPVKETGQLEVEKYADSIGLPWSSFRPQYIYGPFTNKRDYLDFFFHRVANDAP-IPIPGQPSTCTTLTHVEDVASMLAAVIGNPNAPKQV 263
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BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A7S0QRB5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QRB5_9CRYP)

HSP 1 Score: 224 bits (570), Expect = 4.430e-69
Identity = 120/217 (55.30%), Postives = 150/217 (69.12%), Query Frame = 1 
Query:   10 ALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSEGVGKLVPE--GESFDYVFDNYAKDVDTCKNLADCAKA-WGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVN 651
            ALI QNKGGGHGEIGYHLA +L  K ++VT+LQD+A    DK PF  Y  L+SK    V     E    +  +  G++F +VFDN+AKD  T + +A  A A W VK+YAYVSSGGMYK     P TE +  KE+GQR+VE+ +A  GLPWTSFRPQYIYGP TNKRDYLDWFF+R+V      PLP +G+QL++++H EDVA M+A VVG E A +
Sbjct:   23 ALIVQNKGGGHGEIGYHLAKQLSSKGLAVTLLQDAAAK-MDKPPFNDYELLKSKHGVEVLACKLEDPADIKDKLAGKAFSHVFDNFAKDKATAETVAGLATAGWDVKSYAYVSSGGMYKSGAAQPMTEDAATKETGQREVEQFLAAAGLPWTSFRPQYIYGPFTNKRDYLDWFFNRIVRDRP-CPLPGNGEQLLSISHVEDVARMMAGVVGKEAAAS 237
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BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A7S2U5K3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U5K3_9EUKA)

HSP 1 Score: 223 bits (568), Expect = 1.290e-68
Identity = 118/211 (55.92%), Postives = 146/211 (69.19%), Query Frame = 1 
Query:    1 AGKALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKES-GQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVV 630
            A + LI QNKGGGHGEIGYHLA KL     SVT++ D A       PF+ YG+L+SKG T V+ D  +        G+ FD V+DN+AK  DTC   AD AK WGV +Y YVSS GMYK  + +P  E+ +VK++ GQ++VE H+  +GLPWTSFRPQYIYGPLTNKRDYLD+FFDRVV G   +P+   G QLV LTHA DVA M+AS++
Sbjct:   36 ASRVLIIQNKGGGHGEIGYHLANKLASDGHSVTIMGDPA-TKLQSLPFSRYGDLKSKGVTTVFADPCD-PSSFANLGQ-FDVVYDNFAKGKDTCAVAADLAKQWGVSHYGYVSSAGMYKPGNLMPMVETLNVKDTAGQKEVEDHLDRMGLPWTSFRPQYIYGPLTNKRDYLDYFFDRVVRGRP-VPVAGSGQQLVTLTHAADVAGMMASII 242
[Close]
BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: I2CPE2_NANGC (NAD(P)-bd_dom domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPE2_NANGC)

HSP 1 Score: 223 bits (569), Expect = 1.350e-68
Identity = 118/217 (54.38%), Postives = 143/217 (65.90%), Query Frame = 1 
Query:   10 ALIAQNKGGGHGEIGYHLALKLI-EKDISVTVLQDSAGNNKDKQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            ALI QNKGGGHGEIGYHLALKL+ EK + VT+L D   + K  QPF SYG+L   G  I+  D      K +  G SF YVFDN+AK  +      D A+AW ++ Y +VSSGGMY+  D  P  E S V  +  R++E  +   GLP+T FRPQYIYGPLT+KRDYLDWFF R+V     +PLPLHGDQ   LTH EDVAS+LA+VV N  A+ QV
Sbjct:   55 ALIIQNKGGGHGEIGYHLALKLVKEKGLQVTLLNDKYDDQK--QPFKSYGDLTGAGVDILSADLGSADVKSLLSGRSFHYVFDNFAKSSEALPPFLDLARAWPLQVYVFVSSGGMYQVEDSFPLLEDSPVALNEPRKIELAIEASGLPYTFFRPQYIYGPLTSKRDYLDWFFHRLVRDKP-LPLPLHGDQFTTLTHVEDVASLLAAVVDNPQALRQV 268
[Close]
BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Match: A0A7S2G0W8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0W8_9STRA)

HSP 1 Score: 221 bits (564), Expect = 7.010e-68
Identity = 117/220 (53.18%), Postives = 150/220 (68.18%), Query Frame = 1 
Query:    4 GKALIAQNKGGGHGEIGYHLALKLIEK-DISVTVLQDSAGNNKD-KQPFASYGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADCAKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLPWTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAEDVASMLASVVGNENAVNQV 657
            G+AL+ QNKGGGHGE+GYHL L L +K  + VT++ D   + K  K+P+ SY  LE+ G  IVW D   G+  L  E   F++VFDN++KD D  K   + AK+WGV NY +VSS GMY  S +    ES DVKE+GQR VEK +A+ GLPWTSFRPQYIYGP TNKRDYLD+FF+R    +  IP P  G+Q +  T+AEDVA++LA+ V N  AV +V
Sbjct:   64 GRALVVQNKGGGHGELGYHLCLTLADKYGLEVTMVHDGGPDAKTGKEPWDSYKNLEAAGVEIVWADLGAGMPSLTGE---FEFVFDNWSKDADLAKPYVEAAKSWGVSNYVFVSSAGMY--SGKGSLKESDDVKETGQRAVEKMLADQGLPWTSFRPQYIYGPYTNKRDYLDFFFNRAARNMP-IPCPEGGEQGLCCTNAEDVAALLATPVANPAAVGEV 277
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10116.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6N0_9PHAE5.660e-14993.61Epimerase domain-containing protein n=2 Tax=Ectoca... [more]
A0A836C9R0_9STRA1.090e-10270.14Epimerase domain-containing protein (Fragment) n=1... [more]
A0A7S2XZ15_9STRA6.590e-8056.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2BN61_9STRA1.840e-7857.99Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V1PCS3_HETAK1.220e-7356.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4IC15_9ALVE4.410e-7255.25Epimerase domain-containing protein n=1 Tax=Chrome... [more]
A0A7S0QRB5_9CRYP4.430e-6955.30Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2U5K3_9EUKA1.290e-6855.92Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
I2CPE2_NANGC1.350e-6854.38NAD(P)-bd_dom domain-containing protein n=1 Tax=Na... [more]
A0A7S2G0W8_9STRA7.010e-6853.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10116contigL-digitata_M_contig10116:7325..9210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRS9
PFAMsEpimerase,NAD_binding_10
Model size657
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006412,GO:0006417,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009891,GO:0009893,GO:0009941,GO:0009987,GO:0010033,GO:0010287,GO:0010319,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0019538,GO:0022613,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032268,GO:0032270,GO:0032544,GO:0032991,GO:0034248,GO:0034250,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0048046,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Exons5
Evalue2.64e-150
EggNOG OGs28N8Y@1|root,2QUUA@2759|Eukaryota
Ec32 ortholog descriptionNAD-dependent epimerase/dehydratase, N-terminal domain
Ec32 orthologEc-08_002300.1
DescriptionNAD dependent epimerase/dehydratase family
Cds size657
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406614.9265914-CDS-L-digitata_M_contig10116:7324..74731682406614.9265914-CDS-L-digitata_M_contig10116:7324..7473Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10116 7325..7473 +
1682406614.9366636-CDS-L-digitata_M_contig10116:7893..80551682406614.9366636-CDS-L-digitata_M_contig10116:7893..8055Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10116 7894..8055 +
1682406614.9482672-CDS-L-digitata_M_contig10116:8423..84811682406614.9482672-CDS-L-digitata_M_contig10116:8423..8481Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10116 8424..8481 +
1682406614.9554415-CDS-L-digitata_M_contig10116:8622..87171682406614.9554415-CDS-L-digitata_M_contig10116:8622..8717Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10116 8623..8717 +
1682406614.9624043-CDS-L-digitata_M_contig10116:9017..92101682406614.9624043-CDS-L-digitata_M_contig10116:9017..9210Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10116 9018..9210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10116.3.1prot_L-digitata_M_contig10116.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10116 7325..9210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10116.3.1

>prot_L-digitata_M_contig10116.3.1 ID=prot_L-digitata_M_contig10116.3.1|Name=mRNA_L-digitata_M_contig10116.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=219bp
AGKALIAQNKGGGHGEIGYHLALKLIEKDISVTVLQDSAGNNKDKQPFAS
YGELESKGATIVWGDFSEGVGKLVPEGESFDYVFDNYAKDVDTCKNLADC
AKAWGVKNYAYVSSGGMYKDSDEVPFTESSDVKESGQRQVEKHVAELGLP
WTSFRPQYIYGPLTNKRDYLDWFFDRVVHGLEFIPLPLHGDQLVALTHAE
DVASMLASVVGNENAVNQV
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mRNA from alignment at L-digitata_M_contig10116:7325..9210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10116.3.1 ID=mRNA_L-digitata_M_contig10116.3.1|Name=mRNA_L-digitata_M_contig10116.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1886bp|location=Sequence derived from alignment at L-digitata_M_contig10116:7325..9210+ (Laminaria digitata LdigPH10_18mv male)
GCTGGTAAAGCTTTAATCGCCCAGAACAAGGGAGGTGGTCACGGAGAGAT
CGGATACCATTTGGCCTTGAAGCTGATCGAGAAGGACATCTCCGTTACCG
TGCTACAGGATAGCGCCGGCAACAACAAGGACAAGCAGCCCTTCGCCAGG
TTTGTTCCTATTCCTCCCCGAACAACCCTAAATATACTCGCACACGAACA
AACCCTGAATCCTTCGAACTTCGAAGTATACGAATATGTCTTCACCATTG
CTCGTGACTGTCGAATGTTGCTGTACCGGCAGACCGGTGGGTTCGACTGT
TCGAACCGCTGCGGCAGGTTTTCGGCCCTGGTGTCGGGGAGGCGGGTGTT
TTTTTGTTGTCTTGCTCATGCCACTTCTTCAGACAATTCGCGTGATGGGT
AGACAATAGACAAGGATGTACGTGTCTCGAGCTAGTTGGACCAGTACCCT
GGTATGGTACAGACCCACGGGTAGTATTATATGTATGGTACGAGTAGTAT
TTACATGTACCAGGTAATGCTGACTGCTGATCCCGCCAGCTCCTCCCACA
CTCTTTTCGGTGCGTGCAGCTACGGAGAGCTTGAGAGCAAGGGGGCGACG
ATTGTGTGGGGGGACTTTTCTGAGGGCGTAGGCAAGCTCGTCCCCGAAGG
AGAATCTTTCGACTACGTATTCGACAACTACGCTAAGGACGTTGACACCT
GCAAGAACTTGGCGGACTGTGCCAAAGCATGGTGCGTACCTACCTGGTAC
CTGGAGTTGGGGTGTGGTCGGCAAACGGCCAAGGTTCACTTGTATTTTGC
GGAGATGGTTGCTGAGTGCTGCGCGAATGGTGCACGTTTGCGTAACATGA
GTGCAGACGTGGCTGTGGTTGCAGGATGGCGTTTCGCCAACGGTGGCTTG
TACATAAAACATGCTCCCGACAGTGCATAGCGTGCGCGATAAGTAGGTCG
TTTAGTATGATGCCGTTGGGGTCGCAAACGACGGTAGTTTTTTCAGACCG
GTATGACCGCCGTCCGCTCCCTGCCAGACAATTCGTTTAAATGTATCTCG
ATCCTGTACCGAGCAACGAGCCAACACCGTCGCTTCGCGCACATCACAGG
GGGGTGAAGAACTACGCATACGTGTCGTCGGGCGGGATGTATAAGGACAG
CGATGAGGTCAGTACCGTTGCTATGTAAATTTATACCGCTGTATGAGCGG
TTGCCGACGTGACTGAACCAACGTTACCGTTTTGATTCGATGTGTTGCGT
GGAGGCCTCGTCGTATATATATTCAAACCTACGGCATGCGTTTCGCAGGT
ACCATTCACCGAGAGCAGTGACGTCAAGGAGAGCGGCCAGCGCCAGGTGG
AGAAGCATGTCGCCGAGCTGGGTCTGCCGTGGACATCGTTCCGGTGAGTC
GTTTGTCATCGCTCCTGTGATTTACGGGTACCACGCGACGCAATGATCCG
TTGACGATGTCGCGCTAGGATGCACCAGATACAAATCATAAGAGCATCGC
GGTGTTTGGTGACGGTGCTCACTGGAGGTGCAATCAGCGGGAGGTCCACC
AATGCATAGCCGAAATCTCCTCTCCGCAACGGGAACCTTTCGTGACCAAC
GTTTTTTAGCCTCCGCGTTTGCTAATCGATGTAGAGCTGTTGGTTTAATC
CCCGTGTGTCTTCTCCGCAACCTCGGCGTACTTCCCTTCACAGCCCGCAG
TACATCTACGGCCCTCTGACCAACAAGCGTGACTACCTGGATTGGTTCTT
CGACCGTGTTGTGCATGGTTTGGAGTTCATTCCTCTACCCTTGCACGGAG
ACCAGCTCGTCGCCCTCACGCACGCAGAGGATGTAGCGTCCATGCTCGCT
AGCGTTGTCGGGAACGAAAACGCGGTCAATCAGGTG
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Coding sequence (CDS) from alignment at L-digitata_M_contig10116:7325..9210+

>mRNA_L-digitata_M_contig10116.3.1 ID=mRNA_L-digitata_M_contig10116.3.1|Name=mRNA_L-digitata_M_contig10116.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=657bp|location=Sequence derived from alignment at L-digitata_M_contig10116:7325..9210+ (Laminaria digitata LdigPH10_18mv male)
GCTGGTAAAGCTTTAATCGCCCAGAACAAGGGAGGTGGTCACGGAGAGAT
CGGATACCATTTGGCCTTGAAGCTGATCGAGAAGGACATCTCCGTTACCG
TGCTACAGGATAGCGCCGGCAACAACAAGGACAAGCAGCCCTTCGCCAGC
TACGGAGAGCTTGAGAGCAAGGGGGCGACGATTGTGTGGGGGGACTTTTC
TGAGGGCGTAGGCAAGCTCGTCCCCGAAGGAGAATCTTTCGACTACGTAT
TCGACAACTACGCTAAGGACGTTGACACCTGCAAGAACTTGGCGGACTGT
GCCAAAGCATGGGGGGTGAAGAACTACGCATACGTGTCGTCGGGCGGGAT
GTATAAGGACAGCGATGAGGTACCATTCACCGAGAGCAGTGACGTCAAGG
AGAGCGGCCAGCGCCAGGTGGAGAAGCATGTCGCCGAGCTGGGTCTGCCG
TGGACATCGTTCCGCCCGCAGTACATCTACGGCCCTCTGACCAACAAGCG
TGACTACCTGGATTGGTTCTTCGACCGTGTTGTGCATGGTTTGGAGTTCA
TTCCTCTACCCTTGCACGGAGACCAGCTCGTCGCCCTCACGCACGCAGAG
GATGTAGCGTCCATGCTCGCTAGCGTTGTCGGGAACGAAAACGCGGTCAA
TCAGGTG
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