mRNA_L-digitata_M_contig101069.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig101069.1.1
Unique NamemRNA_L-digitata_M_contig101069.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A059FE04_9PROT (Isovaleryl-CoA dehydrogenase n=35 Tax=root TaxID=1 RepID=A0A059FE04_9PROT)

HSP 1 Score: 234 bits (596), Expect = 3.700e-74
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MI NTYP+LNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHS LCVNQLRRWGND+QK+RYL
Sbjct:    1 MIANTYPSLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSNLCVNQLRRWGNDNQKTRYL 119
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BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A399R3W2_9PROT (Isovaleryl-CoA dehydrogenase n=3 Tax=Henriciella TaxID=453849 RepID=A0A399R3W2_9PROT)

HSP 1 Score: 218 bits (554), Expect = 7.890e-68
Identity = 105/119 (88.24%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MIPNTYPTLNFDLGETADMIR+TV SFA + +AP AAEIDRTD FPR LLPKMGELGLLGITVEEEWGG+GLGYLEHVVAMEEISRASASVGLSYGAHS LCVNQLRRWG D+QK RYL
Sbjct:    1 MIPNTYPTLNFDLGETADMIRDTVKSFAADHVAPLAAEIDRTDVFPRHLLPKMGELGLLGITVEEEWGGSGLGYLEHVVAMEEISRASASVGLSYGAHSNLCVNQLRRWGTDEQKKRYL 119
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A4Q5XVF7_9PROT (Isovaleryl-CoA dehydrogenase n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A4Q5XVF7_9PROT)

HSP 1 Score: 207 bits (528), Expect = 6.260e-64
Identity = 102/119 (85.71%), Postives = 111/119 (93.28%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MIPNT  +L+FDLGETADMIR+TV+SFAQ+EIAPRAAEIDRTD FPRDL P+MGELGLLGITVEEEWGG+GLGYLEH VAMEEISRASASVGLSYGAHS LCVNQ+RRWG D+QK RYL
Sbjct:    1 MIPNTR-SLDFDLGETADMIRDTVSSFAQSEIAPRAAEIDRTDEFPRDLWPRMGELGLLGITVEEEWGGSGLGYLEHAVAMEEISRASASVGLSYGAHSNLCVNQMRRWGTDEQKRRYL 118
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A3C2E337_9PROT (Acyl-CoA dehydrogenase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E337_9PROT)

HSP 1 Score: 205 bits (521), Expect = 7.240e-63
Identity = 97/119 (81.51%), Postives = 108/119 (90.76%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MIPN YP++NFDLGETA+MIR+TV SFA +E+APRAAEIDRTD FP DL  KMG+LGLLGITVEE+WGGTGLGYLEHVVAMEEISR SASVGLSYGAHS LCVNQ+RRW ND+QK R+L
Sbjct:    1 MIPNQYPSMNFDLGETAEMIRDTVRSFASDELAPRAAEIDRTDEFPADLWRKMGDLGLLGITVEEDWGGTGLGYLEHVVAMEEISRGSASVGLSYGAHSNLCVNQVRRWANDEQKHRFL 119
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A2E1LQF9_9PROT (Acyl-CoA dehydrogenase n=2 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2E1LQF9_9PROT)

HSP 1 Score: 202 bits (515), Expect = 5.620e-62
Identity = 98/114 (85.96%), Postives = 104/114 (91.23%), Query Frame = 1 
Query:   16 YPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            YPTLNFDLGETADMIR+TV +FA NEIAP A+EIDRTD FPR LLP+MGE+GLLGITVEEEWGG+GLGYLEH VAMEEISRASASVGLSYGAHS LCVNQLRRWG D QK RYL
Sbjct:    5 YPTLNFDLGETADMIRDTVRAFAVNEIAPLASEIDRTDVFPRHLLPRMGEMGLLGITVEEEWGGSGLGYLEHCVAMEEISRASASVGLSYGAHSNLCVNQLRRWGTDAQKLRYL 118
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A2E5V035_9PROT (Acyl-CoA dehydrogenase n=2 Tax=Maricaulaceae TaxID=2800061 RepID=A0A2E5V035_9PROT)

HSP 1 Score: 199 bits (505), Expect = 1.830e-60
Identity = 98/119 (82.35%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MI N YPTL+F LG+TADMIR+TV SFA +EIAPRAAEID+TD FP DL  KMG+LGLLGITVEEE GG+GLGYLEHVVAMEEISRASASVGLSYGAHS LCVNQLRRWGND QK++YL
Sbjct:    1 MISNQYPTLDFHLGDTADMIRDTVRSFASDEIAPRAAEIDQTDIFPHDLWRKMGDLGLLGITVEEELGGSGLGYLEHVVAMEEISRASASVGLSYGAHSNLCVNQLRRWGNDAQKTKYL 119
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A1G9VVU5_9PROT (Isovaleryl-CoA dehydrogenase n=4 Tax=Maricaulis TaxID=74317 RepID=A0A1G9VVU5_9PROT)

HSP 1 Score: 197 bits (501), Expect = 8.060e-60
Identity = 98/119 (82.35%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MI N YP+L+FDLGETADMIR+TV SFA +EIAPRAAEIDR+D FP DL  KMG LGLLG+TV EE GGTGLGYLEHVVAMEEISRASASVGLSYGAHS LCVNQLRRWGN +QK+RYL
Sbjct:    5 MISNQYPSLDFDLGETADMIRDTVRSFASDEIAPRAAEIDRSDVFPADLWEKMGALGLLGMTVPEEDGGTGLGYLEHVVAMEEISRASASVGLSYGAHSNLCVNQLRRWGNAEQKARYL 123
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A0A2P2E7Z4_9PROT (Acyl-CoA dehydrogenase n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A2P2E7Z4_9PROT)

HSP 1 Score: 197 bits (500), Expect = 1.060e-59
Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            M+ N+YPTL+FDLGETA+ IRETV  F+  EIAPRAA+IDRTDTFPRDL PK+GELGLLGITVEE  GG+GLGYLEHV+AMEEISRASASVGLSYGAHS LCVNQLRRWG  +QK+RYL
Sbjct:    1 MLRNSYPTLDFDLGETAEAIRETVERFSAAEIAPRAADIDRTDTFPRDLWPKLGELGLLGITVEEADGGSGLGYLEHVIAMEEISRASASVGLSYGAHSNLCVNQLRRWGTAEQKARYL 119
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: A7HWV5_PARL1 (Acyl-CoA dehydrogenase domain protein n=12 Tax=Alphaproteobacteria TaxID=28211 RepID=A7HWV5_PARL1)

HSP 1 Score: 196 bits (499), Expect = 1.450e-59
Identity = 94/119 (78.99%), Postives = 107/119 (89.92%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            M+ N YP+L+FDLGETADMIR+TV +F  ++I+PRAAEIDRT+ FPRDL P++GELGLLGITVEEE+GGTGLGYLEHVVAMEEISR SASVGLSYGAHS LCVNQLRRWG D QK +YL
Sbjct:    1 MLANDYPSLDFDLGETADMIRDTVRAFTADKISPRAAEIDRTNEFPRDLWPQLGELGLLGITVEEEYGGTGLGYLEHVVAMEEISRGSASVGLSYGAHSNLCVNQLRRWGTDAQKRKYL 119
[Close]
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Match: Q0ANV6_MARMM (Isovaleryl-CoA dehydrogenase n=3 Tax=Maricaulis TaxID=74317 RepID=Q0ANV6_MARMM)

HSP 1 Score: 196 bits (499), Expect = 1.450e-59
Identity = 94/119 (78.99%), Postives = 108/119 (90.76%), Query Frame = 1 
Query:    1 MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLLPKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHSTLCVNQLRRWGNDDQKSRYL 357
            MIPN YP+L+F+LG+TA+MIR+TV SFA +EIAPRAAEID+TD FP DL  KMGELGLLGITV E+ GGTGLGYLEHV+AMEEISRASASVGLSYGAHS LCVNQ+RRWGN +QK++YL
Sbjct:    1 MIPNQYPSLDFNLGDTAEMIRDTVRSFASDEIAPRAAEIDKTDVFPADLWQKMGELGLLGITVSEDDGGTGLGYLEHVIAMEEISRASASVGLSYGAHSNLCVNQMRRWGNAEQKTKYL 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig101069.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A059FE04_9PROT3.700e-7495.80Isovaleryl-CoA dehydrogenase n=35 Tax=root TaxID=1... [more]
A0A399R3W2_9PROT7.890e-6888.24Isovaleryl-CoA dehydrogenase n=3 Tax=Henriciella T... [more]
A0A4Q5XVF7_9PROT6.260e-6485.71Isovaleryl-CoA dehydrogenase n=5 Tax=Proteobacteri... [more]
A0A3C2E337_9PROT7.240e-6381.51Acyl-CoA dehydrogenase n=3 Tax=Alphaproteobacteria... [more]
A0A2E1LQF9_9PROT5.620e-6285.96Acyl-CoA dehydrogenase n=2 Tax=Hyphomonadaceae Tax... [more]
A0A2E5V035_9PROT1.830e-6082.35Acyl-CoA dehydrogenase n=2 Tax=Maricaulaceae TaxID... [more]
A0A1G9VVU5_9PROT8.060e-6082.35Isovaleryl-CoA dehydrogenase n=4 Tax=Maricaulis Ta... [more]
A0A2P2E7Z4_9PROT1.060e-5980.67Acyl-CoA dehydrogenase n=6 Tax=Proteobacteria TaxI... [more]
A7HWV5_PARL11.450e-5978.99Acyl-CoA dehydrogenase domain protein n=12 Tax=Alp... [more]
Q0ANV6_MARMM1.450e-5978.99Isovaleryl-CoA dehydrogenase n=3 Tax=Maricaulis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig101069contigL-digitata_M_contig101069:3..359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1280948.HY36_03595
Preferred nameivD
PFAMsAcyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Model size357
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00246
KEGG koko:K00253
KEGG ReactionR04095
KEGG Pathwayko00280,ko01100,map00280,map01100
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.69e-77
EggNOG OGsCOG1960@1|root,COG1960@2|Bacteria,1MUDR@1224|Proteobacteria,2TREJ@28211|Alphaproteobacteria,43W6X@69657|Hyphomonadaceae
EC1.3.8.4
DescriptionCatalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA
Cds size357
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406613.7766833-CDS-L-digitata_M_contig101069:2..3591682406613.7766833-CDS-L-digitata_M_contig101069:2..359Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig101069 3..359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig101069.1.1prot_L-digitata_M_contig101069.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig101069 3..359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig101069.1.1

>prot_L-digitata_M_contig101069.1.1 ID=prot_L-digitata_M_contig101069.1.1|Name=mRNA_L-digitata_M_contig101069.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=119bp
MIPNTYPTLNFDLGETADMIRETVASFAQNEIAPRAAEIDRTDTFPRDLL
PKMGELGLLGITVEEEWGGTGLGYLEHVVAMEEISRASASVGLSYGAHST
LCVNQLRRWGNDDQKSRYL
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mRNA from alignment at L-digitata_M_contig101069:3..359-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig101069.1.1 ID=mRNA_L-digitata_M_contig101069.1.1|Name=mRNA_L-digitata_M_contig101069.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=357bp|location=Sequence derived from alignment at L-digitata_M_contig101069:3..359- (Laminaria digitata LdigPH10_18mv male)
ATGATTCCGAACACATATCCCACTTTGAACTTCGATCTCGGTGAAACTGC
GGACATGATCCGCGAGACCGTGGCAAGTTTCGCCCAGAACGAAATCGCCC
CTCGCGCCGCAGAGATTGACCGCACGGATACGTTTCCGCGCGACCTGTTG
CCGAAAATGGGCGAACTTGGCCTCCTCGGCATCACGGTCGAGGAAGAGTG
GGGCGGCACCGGGCTTGGCTATCTCGAACATGTGGTCGCGATGGAAGAAA
TTTCACGCGCTTCGGCTTCAGTCGGCCTGTCCTACGGCGCCCATTCCACT
CTTTGCGTCAACCAGCTTCGCCGCTGGGGGAATGACGACCAGAAATCCCG
CTACCTT
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Coding sequence (CDS) from alignment at L-digitata_M_contig101069:3..359-

>mRNA_L-digitata_M_contig101069.1.1 ID=mRNA_L-digitata_M_contig101069.1.1|Name=mRNA_L-digitata_M_contig101069.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=357bp|location=Sequence derived from alignment at L-digitata_M_contig101069:3..359- (Laminaria digitata LdigPH10_18mv male)
ATGATTCCGAACACATATCCCACTTTGAACTTCGATCTCGGTGAAACTGC
GGACATGATCCGCGAGACCGTGGCAAGTTTCGCCCAGAACGAAATCGCCC
CTCGCGCCGCAGAGATTGACCGCACGGATACGTTTCCGCGCGACCTGTTG
CCGAAAATGGGCGAACTTGGCCTCCTCGGCATCACGGTCGAGGAAGAGTG
GGGCGGCACCGGGCTTGGCTATCTCGAACATGTGGTCGCGATGGAAGAAA
TTTCACGCGCTTCGGCTTCAGTCGGCCTGTCCTACGGCGCCCATTCCACT
CTTTGCGTCAACCAGCTTCGCCGCTGGGGGAATGACGACCAGAAATCCCG
CTACCTT
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