mRNA_L-digitata_M_contig100969.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100969.1.1
Unique NamemRNA_L-digitata_M_contig100969.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 8.290e-67
Identity = 118/243 (48.56%), Postives = 164/243 (67.49%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALID-VTQPLELVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH N Q +++L +  G+G+ + D   S S CGTC + K+ QQNHP++A +D +T+ L+LV TDL GPISP++  G +++AKFTDH TRLK+VYF++KK +A+ +L+NY QDV +P G R+Q L SD GGEY   D+R+YC  T I Q F++ +TPQQNGISER+  ++ NM RC + E  +PK LW E    +V+L NR+P   L G TP+    G    +L  LR  G+RAFVH E +  KL
Sbjct:  245 GHPNVQVLEQLARIDGSGVHLRD---SFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHKALKGDTPYFRMFGKQA-NLSFLRIIGSRAFVHIEGHTTKL 483
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 2.420e-60
Identity = 108/245 (44.08%), Postives = 151/245 (61.63%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:  426 GHLNARSLDILRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 666
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 4.180e-60
Identity = 108/245 (44.08%), Postives = 152/245 (62.04%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   50 GHLNARSLDILRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 2.860e-59
Identity = 109/245 (44.49%), Postives = 152/245 (62.04%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK+   +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVHQERY KKL
Sbjct:   50 GHLNARSLDILRKDTGTGVDFRD---SLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSRLRVIGARAFVHQERYRKKL 290
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 3.090e-59
Identity = 108/245 (44.08%), Postives = 152/245 (62.04%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   50 GHLNARSLDILRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 3.580e-59
Identity = 108/245 (44.08%), Postives = 152/245 (62.04%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   50 GHLNARSLDILRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.430e-59
Identity = 106/245 (43.27%), Postives = 150/245 (61.22%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+ C  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ER  KKL
Sbjct:   50 GHLNARSLDILRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERCRKKL 290
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 7.720e-59
Identity = 108/245 (44.08%), Postives = 151/245 (61.63%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   50 GHLNARSLDILRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.570e-58
Identity = 106/245 (43.27%), Postives = 150/245 (61.22%), Query Frame = 1 
Query:    4 GHINAQSMKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            GH+NA+S+  L ++ GT +   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S     +P  L  LR  GARAFVH ERY KKL
Sbjct:  374 GHLNARSLDILRKDTGTEVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLRNKSP-DLSGLRVIGARAFVHHERYRKKL 614
[Close]
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.630e-58
Identity = 105/235 (44.68%), Postives = 144/235 (61.28%), Query Frame = 1 
Query:   25 MKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 729
            M+   + + TG+ + D    ++ C TC + K+ Q+ HP+ A     QP + VYTDL GPISP +  G ++V+KFTD Y+R+  VY +  K+EAI+ L  + QD+V+P+G RL+RLRSD GGEYT   YR++C    I QEF A  TPQQNGISER   +L N+ RC +    +P+FLW E     V++ NR+P   L  +TP+    G    SL HLR  G+ AFVH E Y  KL
Sbjct:    1 MEAAARIEETGVKLKD---KMAPCETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQA-SLRHLRVIGSTAFVHLETYKSKL 231
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE8.290e-6748.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KT84_9PHAE2.420e-6044.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K500_9PHAE4.180e-6044.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE2.860e-5944.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE3.090e-5944.08Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE3.580e-5944.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCM0_9PHAE5.430e-5943.27Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5K1R7_9PHAE7.720e-5944.08Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KVF6_9PHAE1.570e-5843.27Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE3.630e-5844.68Integrase catalytic domain-containing protein (Fra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100969contigL-digitata_M_contig100969:4..732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4530.OS11T0656500-01
PFAMsRVT_2,rve
Model size729
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-40
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size705
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.8128576-CDS-L-digitata_M_contig100969:3..7081682406612.8128576-CDS-L-digitata_M_contig100969:3..708Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100969 4..708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.8212326-UTR-L-digitata_M_contig100969:708..7321682406612.8212326-UTR-L-digitata_M_contig100969:708..732Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100969 709..732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100969.1.1prot_L-digitata_M_contig100969.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100969 4..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100969.1.1

>prot_L-digitata_M_contig100969.1.1 ID=prot_L-digitata_M_contig100969.1.1|Name=mRNA_L-digitata_M_contig100969.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=235bp
MKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLE
LVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINY
TQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQN
GISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGK
TPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL
back to top

mRNA from alignment at L-digitata_M_contig100969:4..732-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100969.1.1 ID=mRNA_L-digitata_M_contig100969.1.1|Name=mRNA_L-digitata_M_contig100969.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=729bp|location=Sequence derived from alignment at L-digitata_M_contig100969:4..732- (Laminaria digitata LdigPH10_18mv male)
NNAGGCCATATCAACGCTCAAAGCATGAAGAAACTGACGCAAGAGAAAGG
CACAGGAATGGTTGTGAACGACACAGATTTTTCCGTTTCAAACTGTGGTA
CATGCGCCCTAGCGAAAACCAAGCAGCAGAACCACCCAAGAGTAGCGCTT
ATTGACGTGACACAGCCTCTAGAGCTAGTGTACACAGACCTATCCGGACC
AATAAGCCCAGCATCTGGAGCGGGAAATAGCCATGTGGCCAAATTCACTG
ACCACTACACGCGCCTAAAGTCGGTGTACTTTCTCAGCAAGAAAAACGAG
GCAATAGACGCCTTAATAAACTACACCCAAGACGTAGTGGTTCCATCTGG
GCATCGACTTCAACGTCTTCGCTCGGATCGCGGAGGCGAGTACACCGGAC
TGGACTATCGAGAGTACTGCCTTCAGACCAGAATCAAGCAGGAATTTGCG
GCAACGAATACACCGCAACAGAACGGGATTTCAGAACGTGAGTGGGCGTC
TCTGTGGAACATGACCAGATGTTTTCTGGCCGAGGCAGGTGTTCCGAAAT
TTCTCTGGCAGGAGGCCTTCCGCATGGCAGTTTACCTGGCAAATCGTGTC
CCGTCCACCCCGCTGGGAGGTAAAACGCCTTTCTCAATGTGGCACGGTGG
AACACCCCCATCACTCGAGCACCTTCGAACGTTCGGTGCGCGAGCGTTCG
TGCATCAAGAGCGATACGTCAAGAAACTA
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100969:4..732-

>mRNA_L-digitata_M_contig100969.1.1 ID=mRNA_L-digitata_M_contig100969.1.1|Name=mRNA_L-digitata_M_contig100969.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=705bp|location=Sequence derived from alignment at L-digitata_M_contig100969:4..732- (Laminaria digitata LdigPH10_18mv male)
ATGAAGAAACTGACGCAAGAGAAAGGCACAGGAATGGTTGTGAACGACAC
AGATTTTTCCGTTTCAAACTGTGGTACATGCGCCCTAGCGAAAACCAAGC
AGCAGAACCACCCAAGAGTAGCGCTTATTGACGTGACACAGCCTCTAGAG
CTAGTGTACACAGACCTATCCGGACCAATAAGCCCAGCATCTGGAGCGGG
AAATAGCCATGTGGCCAAATTCACTGACCACTACACGCGCCTAAAGTCGG
TGTACTTTCTCAGCAAGAAAAACGAGGCAATAGACGCCTTAATAAACTAC
ACCCAAGACGTAGTGGTTCCATCTGGGCATCGACTTCAACGTCTTCGCTC
GGATCGCGGAGGCGAGTACACCGGACTGGACTATCGAGAGTACTGCCTTC
AGACCAGAATCAAGCAGGAATTTGCGGCAACGAATACACCGCAACAGAAC
GGGATTTCAGAACGTGAGTGGGCGTCTCTGTGGAACATGACCAGATGTTT
TCTGGCCGAGGCAGGTGTTCCGAAATTTCTCTGGCAGGAGGCCTTCCGCA
TGGCAGTTTACCTGGCAAATCGTGTCCCGTCCACCCCGCTGGGAGGTAAA
ACGCCTTTCTCAATGTGGCACGGTGGAACACCCCCATCACTCGAGCACCT
TCGAACGTTCGGTGCGCGAGCGTTCGTGCATCAAGAGCGATACGTCAAGA
AACTA
back to top