prot_L-digitata_M_contig100969.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig100969.1.1
Unique Nameprot_L-digitata_M_contig100969.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length235
Homology
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 3.570e-64
Identity = 114/236 (48.31%), Postives = 160/236 (67.80%), Query Frame = 0
Query:    1 MKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALID-VTQPLELVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            +++L +  G+G+ + D   S S CGTC + K+ QQNHP++A +D +T+ L+LV TDL GPISP++  G +++AKFTDH TRLK+VYF++KK +A+ +L+NY QDV +P G R+Q L SD GGEY   D+R+YC  T I Q F++ +TPQQNGISER+  ++ NM RC + E  +PK LW E    +V+L NR+P   L G TP+    G    +L  LR  G+RAFVH E +  KL
Sbjct:  252 LEQLARIDGSGVHLRD---SFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHKALKGDTPYFRMFGKQA-NLSFLRIIGSRAFVHIEGHTTKL 483          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.740e-58
Identity = 105/235 (44.68%), Postives = 144/235 (61.28%), Query Frame = 0
Query:    1 MKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            M+   + + TG+ + D    ++ C TC + K+ Q+ HP+ A     QP + VYTDL GPISP +  G ++V+KFTD Y+R+  VY +  K+EAI+ L  + QD+V+P+G RL+RLRSD GGEYT   YR++C    I QEF A  TPQQNGISER   +L N+ RC +    +P+FLW E     V++ NR+P   L  +TP+    G    SL HLR  G+ AFVH E Y  KL
Sbjct:    1 MEAAARIEETGVKLKD---KMAPCETCIIQKSTQKKHPKTAQHTAVQPCQRVYTDLLGPISPPAKGGYNYVSKFTDEYSRMNIVYLIRSKDEAINTLDRFIQDIVIPNGFRLERLRSDNGGEYTSEYYRDFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLMHGGKLPEFLWGELCCTTVHITNRLPHVHLNNETPYYRMFGKQA-SLRHLRVIGSTAFVHLETYKSKL 231          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 2.760e-56
Identity = 103/235 (43.83%), Postives = 143/235 (60.85%), Query Frame = 0
Query:    4 LTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:  436 LRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 666          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.480e-56
Identity = 108/236 (45.76%), Postives = 147/236 (62.29%), Query Frame = 0
Query:    1 MKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALID-VTQPLELVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            ++KL +  G+ + ++D   S S C TC + K  Q NHP+  + D +TQPL++V TDL GPIS  +  G S+++KF D+ TRL +VYF++ K+EA+   +N+TQDV +PSG R+QRL SD   EY    +R YC  T   Q F + +TPQQNGISER+  ++ NMTRC L EA +PK LW E    +V+L NR+P   L G TP+    G     L  LR  G RAFVH E +  KL
Sbjct:  186 LEKLARADGSEVHLHD---SFSACDTCHVNKCVQNNHPKTVISDNITQPLQVVSTDLIGPISLPALGGYSYISKFNDYITRLNAVYFIAYKDEALLPFVNFTQDVAIPSGLRIQRLHSDNRKEYVNSAFRNYCKTTGAVQTFTSPHTPQQNGISERDGRTILNMTRCILNEARLPKILWGEIAATSVFLINRLPHKALQGDTPYYRMFGKQA-ELSFLRIIGCRAFVHVEGHTNKL 417          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.160e-56
Identity = 103/235 (43.83%), Postives = 144/235 (61.28%), Query Frame = 0
Query:    4 LTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   60 LRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 9.270e-56
Identity = 106/228 (46.49%), Postives = 140/228 (61.40%), Query Frame = 0
Query:    8 KGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            K TG+ + D   ++  C TC L K+ Q+ HP+ A     QP + VYTDL GPISP +  G ++V+KFTD Y+R+  VY +  K+EAID L  +  D+V+P+G RL+RLRSD GGEYT   Y ++C    I QEF A  TPQQNGISER   +L N+ RC L    +P++LW E    AV++ NR+P   L  +TP+    G    SL HLR  G+ AFVH E Y  KL
Sbjct:  490 KETGVKLTD---NLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFCKTIGIVQEFTAPATPQQNGISERAGRTLMNIVRCLLHGGQLPEYLWGELCCTAVHITNRLPHVHLNNETPYYRMFGKQA-SLRHLRVIGSSAFVHVETYKSKL 713          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.930e-55
Identity = 104/235 (44.26%), Postives = 144/235 (61.28%), Query Frame = 0
Query:    4 LTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK+   +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVHQERY KKL
Sbjct:   60 LRKDTGTGVDFRD---SLSPCGVCQIAKYKQSPHPKQSTRELSRPGQLVVIDNVGPVNPPAKYNGGSFPYACKITDDYTKVKEVYLLRKKSNTTEAVHTYNICVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSRLRVIGARAFVHQERYRKKL 290          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.030e-55
Identity = 103/235 (43.83%), Postives = 144/235 (61.28%), Query Frame = 0
Query:    4 LTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   60 LRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.220e-55
Identity = 103/235 (43.83%), Postives = 144/235 (61.28%), Query Frame = 0
Query:    4 LTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G+SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   60 LRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290          
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Match: A0A6H5K1R7_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 6.870e-55
Identity = 103/235 (43.83%), Postives = 143/235 (60.85%), Query Frame = 0
Query:    4 LTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLELVYTDLSGPISPAS---GAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINYTQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQNGISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGKTPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL 235
            L ++ GTG+   D   S+S CG C +AK KQ  HP+ +  ++++P +LV  D  GP++P +   G    +  K TD YT++K VY L KK++  +A+  Y   V    G+R++ +R D+GGE TG ++R+YC  + IK E+AATNTPQQ G SER+  +L  +TRC L +   P  +W E    A YL NR P + LGG TP+S  H  +P  L  LR  GARAFVH ERY KKL
Sbjct:   60 LRKDTGTGVDYRD---SLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGGSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLHNKSP-DLSGLRVIGARAFVHHERYRKKL 290          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100969.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE3.570e-6448.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCZ9_9PHAE2.740e-5844.68Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KT84_9PHAE2.760e-5643.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV56_9PHAE3.480e-5645.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE4.160e-5643.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE9.270e-5646.49Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE1.930e-5544.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.030e-5543.83Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.220e-5543.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1R7_9PHAE6.870e-5543.83Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 46..147
e-value: 1.2E-8
score: 35.1
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 44..210
score: 17.779659
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 41..226
e-value: 3.4E-31
score: 110.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 44..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100969contigL-digitata_M_contig100969:4..708 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100969.1.1mRNA_L-digitata_M_contig100969.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig100969 4..732 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig100969.1.1 ID=prot_L-digitata_M_contig100969.1.1|Name=mRNA_L-digitata_M_contig100969.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=235bp
MKKLTQEKGTGMVVNDTDFSVSNCGTCALAKTKQQNHPRVALIDVTQPLE
LVYTDLSGPISPASGAGNSHVAKFTDHYTRLKSVYFLSKKNEAIDALINY
TQDVVVPSGHRLQRLRSDRGGEYTGLDYREYCLQTRIKQEFAATNTPQQN
GISEREWASLWNMTRCFLAEAGVPKFLWQEAFRMAVYLANRVPSTPLGGK
TPFSMWHGGTPPSLEHLRTFGARAFVHQERYVKKL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf