mRNA_L-digitata_M_contig100921.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100921.3.1
Unique NamemRNA_L-digitata_M_contig100921.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E7PGA3_9PROT (NADH-quinone oxidoreductase subunit B n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PGA3_9PROT)

HSP 1 Score: 131 bits (329), Expect = 2.220e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR
Sbjct:  122 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 182
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BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A383EW90_9ZZZZ (Oxidored_q6 domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383EW90_9ZZZZ)

HSP 1 Score: 129 bits (324), Expect = 3.750e-37
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGIMQLQRKIRRTGTI R
Sbjct:   80 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTIVR 140
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A3SNK2_ROSNI (NADH dehydrogenase beta subunit n=1 Tax=Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM) TaxID=89187 RepID=A3SNK2_ROSNI)

HSP 1 Score: 128 bits (322), Expect = 5.130e-37
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQRKIRRTGTI R
Sbjct:   67 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTIVR 127
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: NUOB_JANSC (NADH-quinone oxidoreductase subunit B n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=NUOB_JANSC)

HSP 1 Score: 130 bits (326), Expect = 5.490e-37
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQRKIRRTGTIAR
Sbjct:  117 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTIAR 177
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A0P1GSS9_9RHOB (NADH-quinone oxidoreductase subunit B n=13 Tax=Rhodobacterales TaxID=204455 RepID=A0A0P1GSS9_9RHOB)

HSP 1 Score: 130 bits (326), Expect = 5.490e-37
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+MQLQRKIRRTGTIAR
Sbjct:  117 SMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTIAR 177
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E5PBL3_9PROT (NADH-quinone oxidoreductase subunit B n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E5PBL3_9PROT)

HSP 1 Score: 130 bits (327), Expect = 5.920e-37
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEALLYGIMQLQRKIRRTGTIAR
Sbjct:  132 SMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 192
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E8T7L1_9PROT (NADH-quinone oxidoreductase subunit B n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E8T7L1_9PROT)

HSP 1 Score: 130 bits (326), Expect = 6.700e-37
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQ+KIRRTGTIAR
Sbjct:  124 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQKKIRRTGTIAR 184
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E0REX1_9RHOB (NADH-quinone oxidoreductase subunit B n=3 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2E0REX1_9RHOB)

HSP 1 Score: 129 bits (325), Expect = 7.790e-37
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI R
Sbjct:  117 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIVR 177
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A7X2FWR4_9PROT (NADH-quinone oxidoreductase subunit B n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWR4_9PROT)

HSP 1 Score: 130 bits (326), Expect = 8.160e-37
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKI+RTGTIAR
Sbjct:  131 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIKRTGTIAR 191
[Close]
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A365UE15_9RHOB (NADH-quinone oxidoreductase subunit B n=2 Tax=Rhodosalinus TaxID=2047740 RepID=A0A365UE15_9RHOB)

HSP 1 Score: 129 bits (325), Expect = 8.980e-37
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:    1 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 183
            SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI R
Sbjct:  122 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTITR 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7PGA3_9PROT2.220e-37100.00NADH-quinone oxidoreductase subunit B n=4 Tax=Alph... [more]
A0A383EW90_9ZZZZ3.750e-3796.72Oxidored_q6 domain-containing protein (Fragment) n... [more]
A3SNK2_ROSNI5.130e-3796.72NADH dehydrogenase beta subunit n=1 Tax=Roseovariu... [more]
NUOB_JANSC5.490e-3798.36NADH-quinone oxidoreductase subunit B n=8 Tax=Alph... [more]
A0A0P1GSS9_9RHOB5.490e-3796.72NADH-quinone oxidoreductase subunit B n=13 Tax=Rho... [more]
A0A2E5PBL3_9PROT5.920e-3796.72NADH-quinone oxidoreductase subunit B n=3 Tax=Alph... [more]
A0A2E8T7L1_9PROT6.700e-3798.36NADH-quinone oxidoreductase subunit B n=2 Tax=Prot... [more]
A0A2E0REX1_9RHOB7.790e-3798.36NADH-quinone oxidoreductase subunit B n=3 Tax=Rhod... [more]
A0A7X2FWR4_9PROT8.160e-3798.36NADH-quinone oxidoreductase subunit B n=1 Tax=Alph... [more]
A0A365UE15_9RHOB8.980e-3798.36NADH-quinone oxidoreductase subunit B n=2 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100921contigL-digitata_M_contig100921:748..933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog290400.Jann_1170
Preferred namenuoB
PFAMsOxidored_q6
Model size186
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00061
KEGG koko:K00331
KEGG TC3.D.1
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,map00190,map01100
KEGG ModuleM00144
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003954,GO:0008150,GO:0008152,GO:0016491,GO:0016651,GO:0016655,GO:0050136,GO:0055114
Exons1
Evalue7.01e-37
EggNOG OGsCOG0377@1|root,COG0377@2|Bacteria,1MUI2@1224|Proteobacteria,2TQK3@28211|Alphaproteobacteria
EC1.6.5.3
DescriptionNDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
Cds size183
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.461966-CDS-L-digitata_M_contig100921:747..9301682406612.461966-CDS-L-digitata_M_contig100921:747..930Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100921 748..930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406612.4719164-UTR-L-digitata_M_contig100921:930..9331682406612.4719164-UTR-L-digitata_M_contig100921:930..933Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig100921 931..933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100921.3.1prot_L-digitata_M_contig100921.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100921 748..930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100921.3.1

>prot_L-digitata_M_contig100921.3.1 ID=prot_L-digitata_M_contig100921.3.1|Name=mRNA_L-digitata_M_contig100921.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=61bp
MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQR
KIRRTGTIAR*
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mRNA from alignment at L-digitata_M_contig100921:748..933-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100921.3.1 ID=mRNA_L-digitata_M_contig100921.3.1|Name=mRNA_L-digitata_M_contig100921.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=186bp|location=Sequence derived from alignment at L-digitata_M_contig100921:748..933- (Laminaria digitata LdigPH10_18mv male)
TCCATGGGATCCTGCGCGAATGGCGGCGGTTATTATCATTACTCATACTC
GGTCGTGCGCGGTTGCGACCGGATCGTACCGGTCGACATATATGTCCCCG
GTTGTCCGCCGACAGCGGAAGCGTTGTTGTATGGAATTATGCAGCTTCAG
CGCAAGATCCGGCGTACCGGAACGATCGCTCGCTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig100921:748..933-

>mRNA_L-digitata_M_contig100921.3.1 ID=mRNA_L-digitata_M_contig100921.3.1|Name=mRNA_L-digitata_M_contig100921.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=183bp|location=Sequence derived from alignment at L-digitata_M_contig100921:748..933- (Laminaria digitata LdigPH10_18mv male)
ATGGGATCCTGCGCGAATGGCGGCGGTTATTATCATTACTCATACTCGGT
CGTGCGCGGTTGCGACCGGATCGTACCGGTCGACATATATGTCCCCGGTT
GTCCGCCGACAGCGGAAGCGTTGTTGTATGGAATTATGCAGCTTCAGCGC
AAGATCCGGCGTACCGGAACGATCGCTCGCTAA
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