prot_L-digitata_M_contig100921.3.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-digitata_M_contig100921.3.1
Unique Name	prot_L-digitata_M_contig100921.3.1
Type	polypeptide
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length	61

Homology

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BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E7PGA3_9PROT (NADH-quinone oxidoreductase subunit B n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7PGA3_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.730e-36
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR
Sbjct:  123 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 182

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BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A383EW90_9ZZZZ (Oxidored_q6 domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383EW90_9ZZZZ)

HSP 1 Score: 127 bits (318), Expect = 2.940e-36
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGIMQLQRKIRRTGTI R
Sbjct:   81 MGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTIVR 140

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BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A3SNK2_ROSNI (NADH dehydrogenase beta subunit n=1 Tax=Roseovarius nubinhibens (strain ATCC BAA-591 / DSM 15170 / ISM) TaxID=89187 RepID=A3SNK2_ROSNI)

HSP 1 Score: 126 bits (316), Expect = 4.030e-36
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQRKIRRTGTI R
Sbjct:   68 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTIVR 127

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BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: NUOB_JANSC (NADH-quinone oxidoreductase subunit B n=8 Tax=Alphaproteobacteria TaxID=28211 RepID=NUOB_JANSC)

HSP 1 Score: 127 bits (320), Expect = 4.280e-36
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQRKIRRTGTIAR
Sbjct:  118 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTIAR 177

[Close]

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A0P1GSS9_9RHOB (NADH-quinone oxidoreductase subunit B n=13 Tax=Rhodobacterales TaxID=204455 RepID=A0A0P1GSS9_9RHOB)

HSP 1 Score: 127 bits (320), Expect = 4.280e-36
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+MQLQRKIRRTGTIAR
Sbjct:  118 MGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTIAR 177

[Close]

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E5PBL3_9PROT (NADH-quinone oxidoreductase subunit B n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E5PBL3_9PROT)

HSP 1 Score: 128 bits (321), Expect = 4.600e-36
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEALLYGIMQLQRKIRRTGTIAR
Sbjct:  133 MGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 192

[Close]

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E8T7L1_9PROT (NADH-quinone oxidoreductase subunit B n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E8T7L1_9PROT)

HSP 1 Score: 127 bits (320), Expect = 5.210e-36
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQ+KIRRTGTIAR
Sbjct:  125 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQKKIRRTGTIAR 184

[Close]

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A2E0REX1_9RHOB (NADH-quinone oxidoreductase subunit B n=3 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2E0REX1_9RHOB)

HSP 1 Score: 127 bits (319), Expect = 6.070e-36
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI R
Sbjct:  118 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIVR 177

[Close]

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A7X2FWR4_9PROT (NADH-quinone oxidoreductase subunit B n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWR4_9PROT)

HSP 1 Score: 127 bits (320), Expect = 6.340e-36
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKI+RTGTIAR
Sbjct:  132 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIKRTGTIAR 191

[Close]

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Match: A0A365UE15_9RHOB (NADH-quinone oxidoreductase subunit B n=2 Tax=Rhodosalinus TaxID=2047740 RepID=A0A365UE15_9RHOB)

HSP 1 Score: 127 bits (319), Expect = 6.990e-36
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query:    1 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTIAR 60
            MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI R
Sbjct:  123 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTITR 182

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100921.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2E7PGA3_9PROT	1.730e-36	100.00	NADH-quinone oxidoreductase subunit B n=4 Tax=Alph...	[more]
A0A383EW90_9ZZZZ	2.940e-36	96.67	Oxidored_q6 domain-containing protein (Fragment) n...	[more]
A3SNK2_ROSNI	4.030e-36	96.67	NADH dehydrogenase beta subunit n=1 Tax=Roseovariu...	[more]
NUOB_JANSC	4.280e-36	98.33	NADH-quinone oxidoreductase subunit B n=8 Tax=Alph...	[more]
A0A0P1GSS9_9RHOB	4.280e-36	96.67	NADH-quinone oxidoreductase subunit B n=13 Tax=Rho...	[more]
A0A2E5PBL3_9PROT	4.600e-36	96.67	NADH-quinone oxidoreductase subunit B n=3 Tax=Alph...	[more]
A0A2E8T7L1_9PROT	5.210e-36	98.33	NADH-quinone oxidoreductase subunit B n=2 Tax=Prot...	[more]
A0A2E0REX1_9RHOB	6.070e-36	98.33	NADH-quinone oxidoreductase subunit B n=3 Tax=Rhod...	[more]
A0A7X2FWR4_9PROT	6.340e-36	98.33	NADH-quinone oxidoreductase subunit B n=1 Tax=Alph...	[more]
A0A365UE15_9RHOB	6.990e-36	98.33	NADH-quinone oxidoreductase subunit B n=2 Tax=Rhod...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006137	NADH:ubiquinone oxidoreductase-like, 20kDa subunit	PFAM	PF01058	Oxidored_q6	coord: 1..48 e-value: 1.6E-10 score: 41.0
None	No IPR available	GENE3D	3.40.50.12280		coord: 1..60 e-value: 4.7E-28 score: 99.5
None	No IPR available	PANTHER	PTHR11995:SF27	NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL	coord: 1..55
None	No IPR available	PANTHER	PTHR11995	NADH DEHYDROGENASE	coord: 1..55
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 1..55
IPR006138	NADH-ubiquinone oxidoreductase, 20 Kd subunit	PROSITE	PS01150	COMPLEX1_20K	coord: 20..36

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100921	contig	L-digitata_M_contig100921:748..930 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100921.3.1	mRNA_L-digitata_M_contig100921.3.1	Laminaria digitata LdigPH10_18mv male	mRNA	L-digitata_M_contig100921 748..933 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-digitata_M_contig100921.3.1 ID=prot_L-digitata_M_contig100921.3.1|Name=mRNA_L-digitata_M_contig100921.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=61bp
MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQR
KIRRTGTIAR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006137	NADH_UbQ_OxRdtase-like_20kDa
IPR006138	NADH_UQ_OxRdtase_20Kd_su