mRNA_L-digitata_M_contig100921.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male
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Overview
Homology
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A2E8XRZ7_9PROT (NADH-quinone oxidoreductase subunit C n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XRZ7_9PROT) HSP 1 Score: 347 bits (889), Expect = 1.360e-119 Identity = 167/209 (79.90%), Postives = 184/209 (88.04%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKATADEEEEGEGA 627
MDEAL DLG YIAAALPQDV ANG+L V R ++K+LTFLRDDSNCLFKVL+DI VD PER ERF+VVY LLS+SQNQR++VK+SVGEDV VPTA+ V+SAA W ERETWDMYGIYF+DHPDLRRILTDYGFEGHP+RKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGM ++LPGDEKA+ADEEE EGA
Sbjct: 1 MDEALKDLGDYIAAALPQDVNGIHTANGQLEVSVRADAIIKVLTFLRDDSNCLFKVLIDICGVDYPERAERFDVVYALLSMSQNQRVRVKLSVGEDVPVPTATTVYSAAGWFERETWDMYGIYFADHPDLRRILTDYGFEGHPMRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMNEILPGDEKASADEEEGAEGA 209
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A2E7PGE6_9PROT (NADH-quinone oxidoreductase subunit C n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7PGE6_9PROT) HSP 1 Score: 333 bits (853), Expect = 4.140e-114 Identity = 159/209 (76.08%), Postives = 182/209 (87.08%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKATADEEEEGEGA 627
M+EAL DLG YIA ALPQDVI T +A GEL+V R +++++L FLRDDS CLFKVL+D++ D PER+ RFE+VY LLS+SQNQR++VK SVGED VP+A+ V+SAA W ERETWDMYGIYF+DHPDLRRILTDYGFEGHP+RKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGM ++LPGDEKA AD EEEGE A
Sbjct: 1 MNEALKDLGEYIAGALPQDVIGTELAFGELMVTVRPSSILRVLAFLRDDSTCLFKVLIDLSGADYPERKSRFEIVYSLLSISQNQRVRVKTSVGEDEPVPSATTVYSAAGWYERETWDMYGIYFTDHPDLRRILTDYGFEGHPMRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMGEILPGDEKAKADGEEEGESA 209
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A2E7I3X1_9PROT (NADH-quinone oxidoreductase subunit C n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2E7I3X1_9PROT) HSP 1 Score: 329 bits (843), Expect = 1.380e-112 Identity = 154/208 (74.04%), Postives = 181/208 (87.02%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKATADEEEEGEG 624
MD+AL DLG Y+AAA+PQDVI VA GEL++ R ++V++L+FLRDDS CLFKVL+D++ D PERE RFEV+Y LLS+SQNQR++VK +V E+V VPTA KVFS+A W ERETWDMYGIYF+DHPDLRR+LTDYGFEGHP+RKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFR FDFLSPWEGM ++LPGDEK++ DEEE EG
Sbjct: 1 MDDALKDLGEYVAAAMPQDVIGMEVAFGELMITVRPASIVRVLSFLRDDSTCLFKVLIDLSGADYPERESRFEVIYSLLSISQNQRVRVKTNVAENVPVPTAIKVFSSAGWYERETWDMYGIYFTDHPDLRRLLTDYGFEGHPMRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRDFDFLSPWEGMGEILPGDEKSSMDEEEGAEG 208
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A6A8QMN2_9PROT (NADH-quinone oxidoreductase subunit C n=1 Tax=Telmatospirillum sp. TaxID=2079197 RepID=A0A6A8QMN2_9PROT) HSP 1 Score: 299 bits (766), Expect = 4.850e-101 Identity = 145/198 (73.23%), Postives = 166/198 (83.84%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKA 594
M +AL DLG YI AAL QDV+ T + GELV+ R + K+LTFLRDD+NCLFK L+D+TAVD PERE+RFEVVY LLSL QNQRI+VK++VGED VPTA+ +FS+A W ERE WDM+GI F+DHPDLRRILTDYGFEGHPLRKDFPLTG VE RYD+ QKRVVY+PVKLTQDFR+FDFLSPWEG VLPGDEKA
Sbjct: 1 MTQALQDLGDYITAALSQDVLSTKLPKGELVITVRAAAIGKVLTFLRDDTNCLFKQLMDVTAVDYPEREQRFEVVYNLLSLKQNQRIRVKVTVGEDTPVPTATGIFSSAGWFEREVWDMFGIPFADHPDLRRILTDYGFEGHPLRKDFPLTGFVERRYDDEQKRVVYEPVKLTQDFRNFDFLSPWEG---VLPGDEKA 195
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: UPI0015D4AC4B (NADH-quinone oxidoreductase subunit C n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI0015D4AC4B) HSP 1 Score: 296 bits (758), Expect = 1.390e-99 Identity = 142/200 (71.00%), Postives = 165/200 (82.50%), Query Frame = 1
Query: 4 DEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDV-LPGDEKATA 600
+EAL +LG +IA+ L DV+ + GEL+ R P +VK LTFLRDD+NC F+ ++DITAVD PEREERFEVVY LLSL NQRI+VK++ ED VP+ V+SAANW ERETWDM+G++FSDHPDLRRILTDYGFEGHP RKDFPLTG VEVRYDE QKRVVY+PVKLTQDFR+FDFLSPWEGMT+V LPGDEKA A
Sbjct: 3 EEALKELGDHIASRLGDDVLKVEIKLGELIAIVRRPAIVKALTFLRDDTNCRFEQVMDITAVDYPEREERFEVVYNLLSLKHNQRIRVKVTTDEDTPVPSVVSVYSAANWFERETWDMFGVFFSDHPDLRRILTDYGFEGHPFRKDFPLTGYVEVRYDEEQKRVVYEPVKLTQDFRTFDFLSPWEGMTNVMLPGDEKAQA 202
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: UPI001A95ED4A (NADH-quinone oxidoreductase subunit C n=1 Tax=Azospirillum sp. SYSU D00513 TaxID=2812561 RepID=UPI001A95ED4A) HSP 1 Score: 294 bits (753), Expect = 6.980e-99 Identity = 140/200 (70.00%), Postives = 166/200 (83.00%), Query Frame = 1
Query: 4 DEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDV-LPGDEKATA 600
++AL +LG +IA AL DV++ VA GEL++ R P+++K LTFLRDD+ C F+ L+DITAVD PEREERFEVVY LLS NQRI++K+ ED VP+ V+SAANW ERETWD++G++FSDHPDLRRILTDYGFEGHP RKDFPLTG VEVRYDE QKRVVY+PV+LTQDFR+FDFLSPWEGMTDV LPGDEKA A
Sbjct: 3 EQALKELGDHIAGALGDDVLNVEVALGELMITVRRPSIIKALTFLRDDTRCSFEQLIDITAVDWPEREERFEVVYNLLSYKHNQRIRLKLGTDEDTPVPSCVPVYSAANWFERETWDLFGVFFSDHPDLRRILTDYGFEGHPFRKDFPLTGYVEVRYDEDQKRVVYEPVRLTQDFRTFDFLSPWEGMTDVMLPGDEKAQA 202
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A1C3RCJ0_9PROT (NADH-quinone oxidoreductase subunit C n=2 Tax=Terasakiella TaxID=196080 RepID=A0A1C3RCJ0_9PROT) HSP 1 Score: 293 bits (750), Expect = 1.570e-98 Identity = 138/198 (69.70%), Postives = 161/198 (81.31%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKA 594
M EALN+L +A L QDV T + NGEL+VHAR +V K+LTFLRDD+NCLFK ++D+ VD PEREERF+VVY LLS S N R++VKI+ ED VP+ + VFSAA W ERE WD+YGIYF HPDLRRI+TDYGFEGHPLRKDFPLTG VE+RYD+ QKRVVY+PVKLTQDFR+FDFLSPWEG+ VLPGDEKA
Sbjct: 1 MTEALNELCDVLAVKLAQDVTSTEILNGELIVHARRDSVCKVLTFLRDDANCLFKFMMDLCGVDYPEREERFDVVYNLLSTSHNLRVRVKITTDEDTPVPSVTGVFSAAGWFEREAWDLYGIYFDGHPDLRRIMTDYGFEGHPLRKDFPLTGYVELRYDDEQKRVVYEPVKLTQDFRNFDFLSPWEGLQGVLPGDEKA 198
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A2A5DXD9_9PROT (NADH-quinone oxidoreductase subunit C n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2A5DXD9_9PROT) HSP 1 Score: 291 bits (745), Expect = 1.080e-97 Identity = 138/202 (68.32%), Postives = 165/202 (81.68%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKATADE 606
MDEAL +L I AALP VI+T +A+GEL++ ++VK+L FLRD++NC F +L+D+ VD PERE+RFEVVY LLSL QNQRI+VK SVGED +P+ V+SAANW ERE WD+YGI+FS+HPDLRRILTDYGFEGHPLRKDFPLTG VE+RYDE QKRVVY+PVKLTQ+FRSFDF+SPWEG +LPGDEKA E
Sbjct: 1 MDEALKELSDMIQAALPDQVIETQIAHGELMIVVPAQSIVKILGFLRDNANCQFSILVDVCGVDYPEREKRFEVVYNLLSLEQNQRIRVKASVGEDETIPSVVGVYSAANWWEREAWDLYGIFFSEHPDLRRILTDYGFEGHPLRKDFPLTGFVELRYDEAQKRVVYEPVKLTQEFRSFDFMSPWEGTEILLPGDEKADGQE 202
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: A0A7Y6YUI2_9HYPH (NADH-quinone oxidoreductase subunit C n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7Y6YUI2_9HYPH) HSP 1 Score: 289 bits (739), Expect = 7.420e-97 Identity = 130/197 (65.99%), Postives = 159/197 (80.71%), Query Frame = 1
Query: 1 MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEK 591
M EAL ++ L Q++ T + NGEL++HAR + K+LTFLRDD+NCLFKVL+D+ D P REERF+VVY LLS++ N R++VK++ ED AVP+ + +FS ANW ERETWD++GIYF DHPDLRRI+TDYGFEGHPLRKDFPLTG VE+RYD+ QKRVVY+PVKLTQDFRSFDFLSPWEG+ VLPGDEK
Sbjct: 1 MSEALKEIAEIANLKLSQEITSTEILNGELILHARRDAICKVLTFLRDDANCLFKVLVDVCGADYPNREERFDVVYNLLSMTHNLRVRVKVTTDEDTAVPSVTSIFSTANWFERETWDLFGIYFDDHPDLRRIMTDYGFEGHPLRKDFPLTGYVELRYDDEQKRVVYEPVKLTQDFRSFDFLSPWEGLQGVLPGDEK 197
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Match: UPI0016784731 (NADH-quinone oxidoreductase subunit C n=1 Tax=Thalassobaculum fulvum TaxID=1633335 RepID=UPI0016784731) HSP 1 Score: 289 bits (740), Expect = 7.890e-97 Identity = 140/205 (68.29%), Postives = 164/205 (80.00%), Query Frame = 1
Query: 10 ALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSNCLFKVLLDITAVDRPEREERFEVVYILLSLSQNQRIKVKISVGEDVAVPTASKVFSAANWSERETWDMYGIYFSDHPDLRRILTDYGFEGHPLRKDFPLTGRVEVRYDETQKRVVYDPVKLTQDFRSFDFLSPWEGMTDVLPGDEKATADEEEEGEG 624
AL DL YI + L QDV D +A GEL + R V+K+LTFLRDDS C FK L+D+T VD P+REERFEVVY LLS+ QN RI++K+ E+ VP+A+ VFS+A W ERETWDMYGIYFSDHPDLRR+LTDYGFEGHPLRKDFPLTG VEVRYD+ QKRVVY+PVKLTQ+FR+FDFLSPWEG VLPGDEKA ++ EG+G
Sbjct: 12 ALKDLAAYIESQLGQDVFDVALARGELSLRCRPSLVLKVLTFLRDDSQCQFKALMDLTGVDYPQREERFEVVYNLLSIRQNLRIRLKVPTDENTPVPSATAVFSSAGWLERETWDMYGIYFSDHPDLRRLLTDYGFEGHPLRKDFPLTGYVEVRYDDAQKRVVYEPVKLTQEFRNFDFLSPWEGAQAVLPGDEKA--EQAPEGQG 214 The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100921.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-digitata_M_contig100921.2.1 >prot_L-digitata_M_contig100921.2.1 ID=prot_L-digitata_M_contig100921.2.1|Name=mRNA_L-digitata_M_contig100921.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=210bp MDEALNDLGVYIAAALPQDVIDTTVANGELVVHARMPTVVKLLTFLRDDSback to top mRNA from alignment at L-digitata_M_contig100921:85..714- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-digitata_M_contig100921.2.1 ID=mRNA_L-digitata_M_contig100921.2.1|Name=mRNA_L-digitata_M_contig100921.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=630bp|location=Sequence derived from alignment at L-digitata_M_contig100921:85..714- (Laminaria digitata LdigPH10_18mv male)back to top Coding sequence (CDS) from alignment at L-digitata_M_contig100921:85..714- >mRNA_L-digitata_M_contig100921.2.1 ID=mRNA_L-digitata_M_contig100921.2.1|Name=mRNA_L-digitata_M_contig100921.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=630bp|location=Sequence derived from alignment at L-digitata_M_contig100921:85..714- (Laminaria digitata LdigPH10_18mv male)back to top |