mRNA_L-digitata_M_contig100653.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig100653.1.1
Unique NamemRNA_L-digitata_M_contig100653.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
[Close]
BLAST of mRNA_L-digitata_M_contig100653.1.1 vs. uniprot
Match: A0A6I2FTB7_9NOCA (DUF4132 domain-containing protein n=1 Tax=Nocardia sp. SYP-A9097 TaxID=2663237 RepID=A0A6I2FTB7_9NOCA)

HSP 1 Score: 62.0 bits (149), Expect = 6.270e-8
Identity = 48/180 (26.67%), Postives = 86/180 (47.78%), Query Frame = 1 
Query:   19 LLATERAEALRQVDKLATSAHARALREFASKSLQSYRQERGISLDHYHHLTIPDHGLNQRGERVFDYGNR----EIKARLINLTDFEFID-----LSTERRYVKLPSPTAADDMERALAAYQEARQMLISFEETSRDLTSHFSRLINARAPIALSTWRSTYQENAIMSTLASKLVWSVED 531
            L+A +   +L  + +++  A A+A ++ AS +++     RG++ + +    +PD GL + G  + DYG R     I  RL  L      D      +   R V LP PTA DD ++A+ AYQ+        + T+ D T    + + +    + +  +  + E+ +M  LA +LVW + D
Sbjct:   87 LVAIDSDASLTVLHRISQQAKAKAFKKHASVAVRQITDARGLTNEEFADRLVPDFGLRETGAMIVDYGTRAFLVRIDQRLCPLVFDAVPDDCGGWAAAGSRKV-LPRPTAKDDQDKAVPAYQDHTAFKEILKTTAADQTKRLEQAMVSGRRWSSAVHQRLFVEHPLMQHLARRLVWVIVD 265
[Close]
BLAST of mRNA_L-digitata_M_contig100653.1.1 vs. uniprot
Match: UPI0004266CF9 (DUF4132 domain-containing protein n=1 Tax=Nocardioides alkalitolerans TaxID=281714 RepID=UPI0004266CF9)

HSP 1 Score: 57.4 bits (137), Expect = 2.940e-6
Identity = 41/164 (25.00%), Postives = 72/164 (43.90%), Query Frame = 1 
Query:   64 LATSAHARALREFASKSLQSYRQERGISLDHYHHLTIPDHGLNQRGERVFDYGNREIKAR------LINLTDFEFIDLSTERRYVKLPSPTAADDMERALAAYQEARQMLISFEETSRDLTSHFSRLINARAPIALSTWRSTYQENAIMSTLASKLVWSVEDLD 537
            +A SA ++ LRE A + L+     +G++ +      +PD GL+ RG R FDYG+R  +        L++  D +     T +    LP     DD++R   A  E +Q+     +  +  T+   R +        +   +    + +M+ L   LVW V+  D
Sbjct:  600 IAGSARSKKLRETAEEWLEGLAARQGLTAEELADRVVPDLGLDARGLRTFDYGDRRFRVAVRDGKPLVHALDAD--GRPTGKAAASLPPSRGTDDLDRVDEAKDEFKQLRSQLADVVKIQTARLDRAVATGRTWTAADHAAFVLHHPVMNALTRPLVWQVDGSD 761
[Close]
BLAST of mRNA_L-digitata_M_contig100653.1.1 vs. uniprot
Match: A0A851ICA9_9FUSO (DUF4132 domain-containing protein n=1 Tax=Leptotrichia sp. oral taxon 223 TaxID=712363 RepID=A0A851ICA9_9FUSO)

HSP 1 Score: 55.8 bits (133), Expect = 1.000e-5
Identity = 40/147 (27.21%), Postives = 67/147 (45.58%), Query Frame = 1 
Query:  103 ASKSLQSYRQERGISLDHYHHLTIPDHGLNQRGERVFDYGNREIKARLINLTDFEFIDLSTERRYVKLPSPTAADDMERALAAYQEARQMLISFEETSRDLT-SHFSRLINA---RAPIALSTWRSTYQENAIMSTLASKLVWSVED 531
            A +SL    +  GI+ D    + +PD G  Q   R+FDYG R+IKA+L  ++    I    E   +    P A+       +  +E R+ +    +  +++T S  + L+NA        +  W  T+  N +M T A +L+W   D
Sbjct:  784 AEQSLDVIARNAGITRDELDDILVPDFGFGQDRIRLFDYGERKIKAKLDVMSIPAKIIAYDENEKILKGLPKASKKFNDVESIVEEYRREIKHIRKLLKEITVSQANSLLNALFLERKWQVKKWIETFIHNPVMQTFAIQLIWKETD 930
[Close]
BLAST of mRNA_L-digitata_M_contig100653.1.1 vs. uniprot
Match: A0A6I2FPP9_9NOCA (DUF4132 domain-containing protein n=1 Tax=Nocardia sp. SYP-A9097 TaxID=2663237 RepID=A0A6I2FPP9_9NOCA)

HSP 1 Score: 53.9 bits (128), Expect = 4.500e-5
Identity = 43/179 (24.02%), Postives = 78/179 (43.58%), Query Frame = 1 
Query:   19 LLATERAEALRQVDKLATSAHARALREFASKSLQSYRQERGISLDHYHHLTIPDHGLNQRGERVFDYGNREIKARLINLTDFEFIDL--------STERRYVKLPSPTAADDMERALAAYQEARQMLISFEETSRDLTSHFSRLINARAPIALSTWRSTYQENAIMSTLASKLVWSVED 531
            L+A +   +L  + +++  A A+A ++ AS +++     RG + + +    +PD GL + G  V DYG R    R+         D         S       LP PTA DD ++A++AYQ         + T+   T      + +    + +  +  + ++ ++  LA  LVW V D
Sbjct:  681 LVAIDSDASLTVLRRISQQAKAKAFKKHASVAVRQIADARGFTDEQFADRLVPDFGLGETGSLVIDYGTRAFLVRIDQRLSPLVFDAVPDSHGGWSAAGTRKVLPRPTAKDDQDKAVSAYQAHTAFKEILKSTAATQTKRLELAMLSGRRWSGAEQQRLFIDHPVLQHLARSLVWVVFD 859
[Close]
BLAST of mRNA_L-digitata_M_contig100653.1.1 vs. uniprot
Match: A0A510L204_9FUSO (DUF4132 domain-containing protein n=4 Tax=Leptotrichia trevisanii TaxID=109328 RepID=A0A510L204_9FUSO)

HSP 1 Score: 53.5 bits (127), Expect = 6.140e-5
Identity = 39/147 (26.53%), Postives = 65/147 (44.22%), Query Frame = 1 
Query:  103 ASKSLQSYRQERGISLDHYHHLTIPDHGLNQRGERVFDYGNREIKARLINLTDFEFIDLSTERRYVKLPSPTAADDMERALAAYQEARQMLISFEETSRDLT-SHFSRLINAR---APIALSTWRSTYQENAIMSTLASKLVWSVED 531
            A +SL    Q   I+ D    + +PD G  Q   R+FDYG R+IKA+L  ++    I    E   +    P A+       +  +E R+ +   ++  +++T S    L+NA        +  W  T+  N +M   A +L+W   D
Sbjct:  784 AEQSLDMIAQNSEIARDELDDILVPDFGFGQDRIRIFDYGERKIKAKLDVMSMPVKITAYDENEKILKGLPKASKKFNDVESIVEEYRREIKHIKKLLKEITVSQADNLLNALFLDRKWQVKKWIETFIHNPVMQAFAIQLIWKETD 930
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100653.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6I2FTB7_9NOCA6.270e-826.67DUF4132 domain-containing protein n=1 Tax=Nocardia... [more]
UPI0004266CF92.940e-625.00DUF4132 domain-containing protein n=1 Tax=Nocardio... [more]
A0A851ICA9_9FUSO1.000e-527.21DUF4132 domain-containing protein n=1 Tax=Leptotri... [more]
A0A6I2FPP9_9NOCA4.500e-524.02DUF4132 domain-containing protein n=1 Tax=Nocardia... [more]
A0A510L204_9FUSO6.140e-526.53DUF4132 domain-containing protein n=4 Tax=Leptotri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100653contigL-digitata_M_contig100653:314..892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog545695.TREAZ_0807
PFAMsDUF4132
Model size579
Max annot lvl203691|Spirochaetes
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.05e-12
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,2J9N9@203691|Spirochaetes
Descriptionlyase activity
Cds size579
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406609.0686607-CDS-L-digitata_M_contig100653:313..8921682406609.0686607-CDS-L-digitata_M_contig100653:313..892Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig100653 314..892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100653.1.1prot_L-digitata_M_contig100653.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig100653 314..892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig100653.1.1

>prot_L-digitata_M_contig100653.1.1 ID=prot_L-digitata_M_contig100653.1.1|Name=mRNA_L-digitata_M_contig100653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=193bp
SLAVLALLATERAEALRQVDKLATSAHARALREFASKSLQSYRQERGISL
DHYHHLTIPDHGLNQRGERVFDYGNREIKARLINLTDFEFIDLSTERRYV
KLPSPTAADDMERALAAYQEARQMLISFEETSRDLTSHFSRLINARAPIA
LSTWRSTYQENAIMSTLASKLVWSVEDLDDSDRAITILPREDG
back to top

mRNA from alignment at L-digitata_M_contig100653:314..892+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig100653.1.1 ID=mRNA_L-digitata_M_contig100653.1.1|Name=mRNA_L-digitata_M_contig100653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=579bp|location=Sequence derived from alignment at L-digitata_M_contig100653:314..892+ (Laminaria digitata LdigPH10_18mv male)
TCACTCGCCGTCCTCGCGCTGCTCGCCACGGAGCGCGCCGAGGCGCTTCG
TCAGGTAGACAAGCTCGCGACCTCCGCGCACGCGCGAGCGCTGCGCGAAT
TCGCCTCCAAGAGCCTGCAATCATACCGACAGGAGCGCGGCATCAGCCTC
GACCACTACCACCACCTCACCATCCCCGATCACGGGTTAAATCAACGCGG
CGAGCGCGTCTTCGACTACGGCAACCGAGAGATCAAGGCTCGCCTTATCA
ACCTGACAGACTTCGAGTTCATCGACCTCTCCACCGAGCGGCGCTACGTC
AAGCTCCCCTCCCCCACGGCCGCGGACGACATGGAGCGCGCGCTCGCGGC
CTATCAGGAGGCGCGTCAGATGCTCATCTCTTTCGAGGAGACCTCGCGCG
ATCTGACCTCGCACTTCTCCAGGTTGATCAACGCGAGGGCGCCGATCGCG
CTCTCCACGTGGCGCTCGACTTACCAGGAGAACGCGATCATGAGCACGCT
GGCGAGCAAGCTCGTCTGGAGCGTCGAAGACCTGGATGATTCGGACCGCG
CGATCACCATCCTGCCGCGAGAGGACGGC
back to top

Coding sequence (CDS) from alignment at L-digitata_M_contig100653:314..892+

>mRNA_L-digitata_M_contig100653.1.1 ID=mRNA_L-digitata_M_contig100653.1.1|Name=mRNA_L-digitata_M_contig100653.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=579bp|location=Sequence derived from alignment at L-digitata_M_contig100653:314..892+ (Laminaria digitata LdigPH10_18mv male)
TCACTCGCCGTCCTCGCGCTGCTCGCCACGGAGCGCGCCGAGGCGCTTCG
TCAGGTAGACAAGCTCGCGACCTCCGCGCACGCGCGAGCGCTGCGCGAAT
TCGCCTCCAAGAGCCTGCAATCATACCGACAGGAGCGCGGCATCAGCCTC
GACCACTACCACCACCTCACCATCCCCGATCACGGGTTAAATCAACGCGG
CGAGCGCGTCTTCGACTACGGCAACCGAGAGATCAAGGCTCGCCTTATCA
ACCTGACAGACTTCGAGTTCATCGACCTCTCCACCGAGCGGCGCTACGTC
AAGCTCCCCTCCCCCACGGCCGCGGACGACATGGAGCGCGCGCTCGCGGC
CTATCAGGAGGCGCGTCAGATGCTCATCTCTTTCGAGGAGACCTCGCGCG
ATCTGACCTCGCACTTCTCCAGGTTGATCAACGCGAGGGCGCCGATCGCG
CTCTCCACGTGGCGCTCGACTTACCAGGAGAACGCGATCATGAGCACGCT
GGCGAGCAAGCTCGTCTGGAGCGTCGAAGACCTGGATGATTCGGACCGCG
CGATCACCATCCTGCCGCGAGAGGACGGC
back to top